181 |
0.0215 |
0.3768 |
b3843 |
ubiD |
-7.81 |
0.067872 |
2 -- 28 |
14 -- 40 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C_______CAGUACA___AA_________UUGCA...UGG-3'\n______________GCGCUUG________GU__AUACCAGGA\n______________||:|||:________||__|:|||||||\n______________CGUGAAU________CA__UGUGGUCCU\n3'-UUU...UUCUU_______UUUUUAAG__A__________UUAGA...CAA-5'\n_____________|____________________________|\n_____________41___________________________13\n |
22 -- 28 |
14 -- 20 |
-21.9915 kcal/mol |
4.97788 kcal/mol |
9.20436 kcal/mol |
1 29@LB@ | |@LB@ 5'-C CAGUACA AA UUGCA...UGG-3'@LB@ GCGCUUG GU AUACCAGGA@LB@ ||:|||: || |:|||||||@LB@ CGUGAAU CA UGUGGUCCU@LB@3'-UUU...UUCUU UUUUUAAG A UUAGA...CAA-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -21.9915 kcal/mol@LB@Unfolding Energy - mRNA 4.97788 kcal/mol@LB@Unfolding Energy - sRNA 9.20436 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 14 -- 20@LB@ |
182 |
0.02157 |
0.3768 |
b0887 |
cydD |
-7.84 |
0.066788 |
30 -- 38 |
33 -- 41 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________29________39\n_____________|_________|\n5'-AUU...AUGGC_________UGCGG...UGA-3'\n______________AGCACUUGA\n______________|||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
32 -- 38 |
33 -- 39 |
-10.6359 kcal/mol |
1.18174 kcal/mol |
1.6188 kcal/mol |
29 39@LB@ | |@LB@5'-AUU...AUGGC UGCGG...UGA-3'@LB@ AGCACUUGA@LB@ |||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -10.6359 kcal/mol@LB@Unfolding Energy - mRNA 1.18174 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 30 -- 38@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 33 -- 39@LB@ |
183 |
0.02165 |
0.3768 |
b4201 |
priB |
-4.41 |
0.419305 |
289 -- 298 |
45 -- 54 |
primosomal protein N |
|
_____________288________299\n_____________|__________|\n5'-AGG...GUUCG__________UC-3'\n______________UGCUUGAGCA\n______________|||||:||||\n______________ACGAAUUCGU\n3'-UUU...UUUGA__________UCUUC...CAA-5'\n_____________|__________|\n_____________55_________44\n |
290 -- 296 |
47 -- 53 |
-14.7774 kcal/mol |
4.46723 kcal/mol |
5.90361 kcal/mol |
288 299@LB@ | |@LB@5'-AGG...GUUCG UC-3'@LB@ UGCUUGAGCA@LB@ |||||:||||@LB@ ACGAAUUCGU@LB@3'-UUU...UUUGA UCUUC...CAA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -14.7774 kcal/mol@LB@Unfolding Energy - mRNA 4.46723 kcal/mol@LB@Unfolding Energy - sRNA 5.90361 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |
184 |
0.02168 |
0.3768 |
b4380 |
yjjI |
-6.70 |
0.131310 |
12 -- 49 |
9 -- 40 |
DUF3029 family protein putative glycine radical enzyme |
|
_____________11________________________________________50\n_____________|_________________________________________|\n5'-ACA...ACUCC___ACACAC_______A_____AUCACAAUUA_________ACUUA...UGG-3'\n______________GCA_________UUCG_UACAC__________AGGAAAUCU\n______________|||_________||||_|||||__________|||||||||\n______________CGU_________AAGC_AUGUG__________UCCUUUAGA\n3'-UUU...UUCUU___GAAUUUUUU____A_____G__________________CUACACAA-5'\n_____________|_________________________________________|\n_____________41________________________________________8\n |
43 -- 49 |
9 -- 15 |
-18.7623 kcal/mol |
2.84333 kcal/mol |
9.22063 kcal/mol |
11 50@LB@ | |@LB@5'-ACA...ACUCC ACACAC A AUCACAAUUA ACUUA...UGG-3'@LB@ GCA UUCG UACAC AGGAAAUCU@LB@ ||| |||| ||||| |||||||||@LB@ CGU AAGC AUGUG UCCUUUAGA@LB@3'-UUU...UUCUU GAAUUUUUU A G CUACACAA-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -18.7623 kcal/mol@LB@Unfolding Energy - mRNA 2.84333 kcal/mol@LB@Unfolding Energy - sRNA 9.22063 kcal/mol@LB@@LB@Position - mRNA 12 -- 49@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 9 -- 15@LB@ |
185 |
0.02171 |
0.3768 |
b0059 |
rapA |
-7.86 |
0.065955 |
35 -- 74 |
2 -- 42 |
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase |
|
_____________34___________________________________________75\n_____________|____________________________________________|\n5'-GCU...AUUUU_____AAAA__________CCAG______U___________C__GACGA...UUU-3'\n______________GAGCA____AAAGAGUUCG____AUACCA_____UUUGAUG_GU\n______________:||||____|||:|:||||____|:||||_____|:|||||_||\n______________UUCGU____UUUUUUAAGC____UGUGGU_____AGACUAC_CA\n3'-UUU...CGUUC_____GAA___________AA________CCUUU_______A__A-5'\n_____________|____________________________________________|\n_____________43___________________________________________1\n |
47 -- 53 |
25 -- 31 |
-26.2778 kcal/mol |
9.20057 kcal/mol |
9.22149 kcal/mol |
34 75@LB@ | |@LB@5'-GCU...AUUUU AAAA CCAG U C GACGA...UUU-3'@LB@ GAGCA AAAGAGUUCG AUACCA UUUGAUG GU@LB@ :|||| |||:|:|||| |:|||| |:||||| ||@LB@ UUCGU UUUUUUAAGC UGUGGU AGACUAC CA@LB@3'-UUU...CGUUC GAA AA CCUUU A A-5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -26.2778 kcal/mol@LB@Unfolding Energy - mRNA 9.20057 kcal/mol@LB@Unfolding Energy - sRNA 9.22149 kcal/mol@LB@@LB@Position - mRNA 35 -- 74@LB@Position - sRNA 2 -- 42@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 25 -- 31@LB@ |
186 |
0.02184 |
0.3768 |
b1256 |
ompW |
-5.92 |
0.201836 |
13 -- 38 |
30 -- 57 |
outer membrane protein W |
|
_____________12___________________________39\n_____________|____________________________|\n5'-GAC...UUAAU______GU______A_____________UUGAU...CUG-3'\n______________AUUUGC___AGCGA_AA_UAUUUAAAAA\n______________|:||||___|||:|_||_:|:|||||||\n______________UGAACG___UCGUU_UU_GUGAAUUUUU\n3'-UUU...UACUU______AAU_____C__C__________UAAGC...CAA-5'\n_____________|____________________________|\n_____________58___________________________29\n |
32 -- 38 |
30 -- 36 |
-16.1426 kcal/mol |
3.99952 kcal/mol |
6.22352 kcal/mol |
12 39@LB@ | |@LB@5'-GAC...UUAAU GU A UUGAU...CUG-3'@LB@ AUUUGC AGCGA AA UAUUUAAAAA@LB@ |:|||| |||:| || :|:|||||||@LB@ UGAACG UCGUU UU GUGAAUUUUU@LB@3'-UUU...UACUU AAU C C UAAGC...CAA-5'@LB@ | |@LB@ 58 29@LB@@LB@@LB@Energy -5.92 kcal/mol@LB@Hybridization Energy -16.1426 kcal/mol@LB@Unfolding Energy - mRNA 3.99952 kcal/mol@LB@Unfolding Energy - sRNA 6.22352 kcal/mol@LB@@LB@Position - mRNA 13 -- 38@LB@Position - sRNA 30 -- 57@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 30 -- 36@LB@ |
187 |
0.02188 |
0.3768 |
b3065 |
rpsU |
-8.54 |
0.042773 |
188 -- 200 |
37 -- 49 |
30S ribosomal subunit protein S21 |
|
_____________187___________201\n_____________|_____________|\n5'-GAC...AUCAA_____________AUGCC...GUC-3'\n______________AGGUGAGAGGCAC\n______________|:|::|||:||||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
194 -- 200 |
37 -- 43 |
-18.635 kcal/mol |
4.05763 kcal/mol |
6.03369 kcal/mol |
187 201@LB@ | |@LB@5'-GAC...AUCAA AUGCC...GUC-3'@LB@ AGGUGAGAGGCAC@LB@ |:|::|||:||||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -18.635 kcal/mol@LB@Unfolding Energy - mRNA 4.05763 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 37 -- 43@LB@ |
188 |
0.02199 |
0.3768 |
b3774 |
ilvC |
-7.43 |
0.085257 |
172 -- 181 |
37 -- 46 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________171________182\n_____________|__________|\n5'-AUG...AACAA__________AACAU...GCU-3'\n______________UAAGAAGCAC\n______________:|||||||||\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
175 -- 181 |
37 -- 43 |
-13.663 kcal/mol |
1.01181 kcal/mol |
5.21654 kcal/mol |
171 182@LB@ | |@LB@5'-AUG...AACAA AACAU...GCU-3'@LB@ UAAGAAGCAC@LB@ :|||||||||@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -13.663 kcal/mol@LB@Unfolding Energy - mRNA 1.01181 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 37 -- 43@LB@ |
189 |
0.02233 |
0.3796 |
b3417 |
malP |
-8.63 |
0.040366 |
227 -- 245 |
35 -- 53 |
maltodextrin phosphorylase |
|
_____________226_________________246\n_____________|___________________|\n5'-ACA...GAUAA__AAUUU____________UCACG...GCC-3'\n______________GC_____CAGGAAGCGCUU\n______________||_____||:|||||:|||\n______________CG_____GUUCUUCGUGAA\n3'-UUU...UUGAA__AAUUC____________UUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________34\n |
239 -- 245 |
35 -- 41 |
-18.4249 kcal/mol |
3.68713 kcal/mol |
6.10399 kcal/mol |
226 246@LB@ | |@LB@5'-ACA...GAUAA AAUUU UCACG...GCC-3'@LB@ GC CAGGAAGCGCUU@LB@ || ||:|||||:|||@LB@ CG GUUCUUCGUGAA@LB@3'-UUU...UUGAA AAUUC UUUUU...CAA-5'@LB@ | |@LB@ 54 34@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -18.4249 kcal/mol@LB@Unfolding Energy - mRNA 3.68713 kcal/mol@LB@Unfolding Energy - sRNA 6.10399 kcal/mol@LB@@LB@Position - mRNA 227 -- 245@LB@Position - sRNA 35 -- 53@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 35 -- 41@LB@ |
190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |