| 71 |
0.00365 |
0.1656 |
b4478 |
dgoD |
-6.42 |
0.153775 |
171 -- 195 |
38 -- 57 |
D-galactonate dehydratase |
|
_____________170_______________________196\n_____________|_________________________|\n5'-AAA...GCAGC_______A____GUAUC________GUGCA...UGA-3'\n______________AUUUGUU_AGGC_____GAGAGGCA\n______________|:|||:|_|:||_____:|||:|||\n______________UGAACGA_UUCG_____UUCUUCGU\n3'-UUU...UACUU_______A_________________GAAUU...CAA-5'\n_____________|_________________________|\n_____________58________________________37\n |
189 -- 195 |
38 -- 44 |
-17.6382 kcal/mol |
5.02573 kcal/mol |
6.19395 kcal/mol |
170 196@LB@ | |@LB@5'-AAA...GCAGC A GUAUC GUGCA...UGA-3'@LB@ AUUUGUU AGGC GAGAGGCA@LB@ |:|||:| |:|| :|||:|||@LB@ UGAACGA UUCG UUCUUCGU@LB@3'-UUU...UACUU A GAAUU...CAA-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -17.6382 kcal/mol@LB@Unfolding Energy - mRNA 5.02573 kcal/mol@LB@Unfolding Energy - sRNA 6.19395 kcal/mol@LB@@LB@Position - mRNA 171 -- 195@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 72 |
0.003773 |
0.1688 |
b1860 |
ruvB |
-7.81 |
0.067658 |
103 -- 111 |
38 -- 46 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________102_______112\n_____________|_________|\n5'-ACG...AACCA_________AGCCG...GUC-3'\n______________CAAGAAGCA\n______________|||||||||\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
105 -- 111 |
38 -- 44 |
-11.4188 kcal/mol |
0.978333 kcal/mol |
2.62609 kcal/mol |
102 112@LB@ | |@LB@5'-ACG...AACCA AGCCG...GUC-3'@LB@ CAAGAAGCA@LB@ |||||||||@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.4188 kcal/mol@LB@Unfolding Energy - mRNA 0.978333 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 103 -- 111@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 73 |
0.004067 |
0.1794 |
b1244 |
oppB |
-5.52 |
0.247965 |
106 -- 113 |
36 -- 43 |
oligopeptide ABC transporter permease |
|
_____________105______114\n_____________|________|\n5'-UCC...AUUGU________AAUGG...GCC-3'\n______________GAAGCACU\n______________||||||||\n______________CUUCGUGA\n3'-UUU...UCGUU________AUUUU...CAA-5'\n_____________|________|\n_____________44_______35\n |
107 -- 113 |
36 -- 42 |
-11.7212 kcal/mol |
2.50266 kcal/mol |
3.69444 kcal/mol |
105 114@LB@ | |@LB@5'-UCC...AUUGU AAUGG...GCC-3'@LB@ GAAGCACU@LB@ ||||||||@LB@ CUUCGUGA@LB@3'-UUU...UCGUU AUUUU...CAA-5'@LB@ | |@LB@ 44 35@LB@@LB@@LB@Energy -5.52 kcal/mol@LB@Hybridization Energy -11.7212 kcal/mol@LB@Unfolding Energy - mRNA 2.50266 kcal/mol@LB@Unfolding Energy - sRNA 3.69444 kcal/mol@LB@@LB@Position - mRNA 106 -- 113@LB@Position - sRNA 36 -- 43@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 74 |
0.004124 |
0.1795 |
b2599 |
pheA |
-8.54 |
0.042758 |
34 -- 48 |
29 -- 42 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________33______________49\n_____________|_______________|\n5'-UGA...UACUA___U___________ACAAA...UCG-3'\n______________AAG_CACUUAAGGAA\n______________|||_|||||||::||\n______________UUC_GUGAAUUUUUU\n3'-UUU...CGUUC_______________AAGCA...CAA-5'\n_____________|_______________|\n_____________43______________28\n |
42 -- 48 |
29 -- 35 |
-11.0993 kcal/mol |
0.931405 kcal/mol |
1.62369 kcal/mol |
33 49@LB@ | |@LB@5'-UGA...UACUA U ACAAA...UCG-3'@LB@ AAG CACUUAAGGAA@LB@ ||| |||||||::||@LB@ UUC GUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -11.0993 kcal/mol@LB@Unfolding Energy - mRNA 0.931405 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 34 -- 48@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 76 |
0.004539 |
0.1924 |
b1722 |
ydiY |
-10.86 |
0.008894 |
80 -- 126 |
13 -- 55 |
acid-inducible putative outer membrane protein |
|
_____________79_______________________________________________127\n_____________|________________________________________________|\n5'-UAA...AUACA__________UAUUC___C___UUUAU__________CUUU_______CGCUA...UGG-3'\n______________UUGC_UAAGU_____GCG_CUU_____AAUUCGUUAC____CCAGGGA\n______________||||_||||:_____||:_|||_____||||||||||____|||||:|\n______________AACG_AUUCG_____CGU_GAA_____UUAAGCAAUG____GGUCCUU\n3'-UUU...CUUUG____A_____UUCUU_______UUUU___________U__________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________56_______________________________________________12\n |
109 -- 115 |
21 -- 27 |
-32.5898 kcal/mol |
7.90727 kcal/mol |
13.8238 kcal/mol |
79 127@LB@ | |@LB@5'-UAA...AUACA UAUUC C UUUAU CUUU CGCUA...UGG-3'@LB@ UUGC UAAGU GCG CUU AAUUCGUUAC CCAGGGA@LB@ |||| ||||: ||: ||| |||||||||| |||||:|@LB@ AACG AUUCG CGU GAA UUAAGCAAUG GGUCCUU@LB@3'-UUU...CUUUG A UUCUU UUUU U UAGAC...CAA-5'@LB@ | |@LB@ 56 12@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -32.5898 kcal/mol@LB@Unfolding Energy - mRNA 7.90727 kcal/mol@LB@Unfolding Energy - sRNA 13.8238 kcal/mol@LB@@LB@Position - mRNA 80 -- 126@LB@Position - sRNA 13 -- 55@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 77 |
0.004637 |
0.1935 |
b0407 |
yajC |
-7.39 |
0.087827 |
147 -- 158 |
37 -- 48 |
SecYEG protein translocase auxillary subunit |
|
_____________146__________159\n_____________|____________|\n5'-UCU...UCAGG____________CACCU...UUU-3'\n______________GGCGAGAAGUAC\n______________:||:|||||:||\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
152 -- 158 |
37 -- 43 |
-17.5904 kcal/mol |
4.37033 kcal/mol |
5.83483 kcal/mol |
146 159@LB@ | |@LB@5'-UCU...UCAGG CACCU...UUU-3'@LB@ GGCGAGAAGUAC@LB@ :||:|||||:||@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -7.39 kcal/mol@LB@Hybridization Energy -17.5904 kcal/mol@LB@Unfolding Energy - mRNA 4.37033 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 147 -- 158@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 78 |
0.004685 |
0.1935 |
b3905 |
rhaS |
-7.96 |
0.061746 |
70 -- 86 |
26 -- 40 |
transcriptional activator of rhaBAD and rhaT |
|
_____________69________________87\n_____________|_________________|\n5'-UGG...UCACC______CCU________ACGCU...AUG-3'\n______________GCAUUU___GAAAAUUC\n______________|||:||___:|||||||\n______________CGUGAA___UUUUUAAG\n3'-UUU...UUCUU______U__________CAAUG...CAA-5'\n_____________|_________________|\n_____________41________________25\n |
80 -- 86 |
26 -- 32 |
-11.6625 kcal/mol |
2.05222 kcal/mol |
1.64811 kcal/mol |
69 87@LB@ | |@LB@5'-UGG...UCACC CCU ACGCU...AUG-3'@LB@ GCAUUU GAAAAUUC@LB@ |||:|| :|||||||@LB@ CGUGAA UUUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -11.6625 kcal/mol@LB@Unfolding Energy - mRNA 2.05222 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 70 -- 86@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 79 |
0.005218 |
0.2128 |
b1264 |
trpE |
-7.84 |
0.066605 |
225 -- 250 |
34 -- 59 |
component I of anthranilate synthase |
|
_____________224__________________________251\n_____________|____________________________|\n5'-UGU...CUCUC_________AACCU______________UCGCG...CGG-3'\n______________GAAC_UGCU_____GCGA_AGGCGCUUA\n______________:|||_||||_____||:|_|:||:||||\n______________UUUG_ACGA_____CGUU_UUCGUGAAU\n3'-UUU...CCUAC____A____AUU______C_________UUUUU...CAA-5'\n_____________|____________________________|\n_____________60___________________________33\n |
244 -- 250 |
34 -- 40 |
-20.2106 kcal/mol |
6.10702 kcal/mol |
6.26371 kcal/mol |
224 251@LB@ | |@LB@5'-UGU...CUCUC AACCU UCGCG...CGG-3'@LB@ GAAC UGCU GCGA AGGCGCUUA@LB@ :||| |||| ||:| |:||:||||@LB@ UUUG ACGA CGUU UUCGUGAAU@LB@3'-UUU...CCUAC A AUU C UUUUU...CAA-5'@LB@ | |@LB@ 60 33@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.2106 kcal/mol@LB@Unfolding Energy - mRNA 6.10702 kcal/mol@LB@Unfolding Energy - sRNA 6.26371 kcal/mol@LB@@LB@Position - mRNA 225 -- 250@LB@Position - sRNA 34 -- 59@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 80 |
0.005376 |
0.2146 |
b1520 |
yneE |
-6.66 |
0.134465 |
278 -- 284 |
34 -- 40 |
bestrophin family putative inner membrane protein |
|
_____________277_____285\n_____________|_______|\n5'-CGU...UCCUC_______CUACU...UCU-3'\n______________GCGCUUA\n______________||:||||\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
278 -- 284 |
34 -- 40 |
-8.65652 kcal/mol |
0.386276 kcal/mol |
1.61352 kcal/mol |
277 285@LB@ | |@LB@5'-CGU...UCCUC CUACU...UCU-3'@LB@ GCGCUUA@LB@ ||:||||@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -6.66 kcal/mol@LB@Hybridization Energy -8.65652 kcal/mol@LB@Unfolding Energy - mRNA 0.386276 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 278 -- 284@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 34 -- 40@LB@ |
