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CopraRNA 6756176

Input and runtime details for job 6756176 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6756176 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:22:58 CET 2018
?CopraRNA Started@ Fri Feb 16 15:23:17 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 20:01:55 CET 2018
?Post-Processing Finished@ Fri Feb 16 20:02:03 CET 2018
?Job Completed@ Fri Feb 16 20:02:30 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=6756176&toolName=CopraRNA ( 30 days expiry )

Description of the job

DsrA

Output download complete results [zip]

Downloadable files

[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 4.307e-10 1.387e-06 b2741 rpoS -17.23 0.000044 75 -- 104 10 -- 40 RNA polymerase sigma S (sigma 38) factor  
2 4.936e-07 0.0007949 b1237 hns -13.24 0.001473 195 -- 222 26 -- 57 global DNA-binding transcriptional dual regulator H-NS  
3 4.385e-06 0.004708 b3749 rbsA -11.98 0.003917 29 -- 86 17 -- 57 D-ribose ABC transporter ATPase  
4 1.769e-05 0.01424 b2105 rcnR -7.88 0.065143 12 -- 26 36 -- 49 transcriptional repressor of rcnA  
5 2.271e-05 0.01463 b0476 aes -9.47 0.023317 2 -- 45 10 -- 53 acetyl esterase  
6 4.032e-05 0.02042 b0889 lrp -10.51 0.011361 210 -- 221 37 -- 48 leucine-responsive global transcriptional regulator  
7 4.438e-05 0.02042 b0794 ybhF -10.77 0.009494 150 -- 165 11 -- 26 putative ABC transporter ATPase  
8 5.642e-05 0.02272 b2282 nuoH -5.33 0.272754 189 -- 221 13 -- 44 NADH:ubiquinone oxidoreductase membrane subunit H  
9 7.531e-05 0.02695 b0491 fetB -11.86 0.004271 187 -- 209 25 -- 47 iron export ABC transporter permease; peroxide resistance protein  
10 0.0001005 0.03239 b1260 trpA -10.26 0.013526 184 -- 203 5 -- 22 tryptophan synthase alpha subunit  
11 0.0001294 0.03789 b3687 ibpA -8.25 0.051487 69 -- 81 26 -- 38 heat shock chaperone  
12 0.0001753 0.04706 b3676 yidH -12.46 0.002725 279 -- 300 7 -- 26 DUF202 family inner membrane protein  
13 0.0002543 0.06302 b3583 sgbE -8.82 0.035786 171 -- 191 39 -- 61 L-ribulose-5-phosphate 4-epimerase  
14 0.0002995 0.06692 b4195 ulaC -9.74 0.019405 182 -- 212 24 -- 54 L-ascorbate-specific enzyme IIA component of PTS  
15 0.0003116 0.06692 b2149 mglA -7.01 0.109495 281 -- 289 33 -- 41 methyl-galactoside ABC transporter ATPase  
16 0.0003675 0.07398 b0566 envY -6.67 0.133095 149 -- 159 37 -- 47 porin thermoregulatory transcriptional activator b1499 b0564 b3515 b4116 b3516
17 0.0004446 0.08107 b1976 mtfA -9.25 0.026966 241 -- 268 36 -- 59 anti-repressor for DgsA(Mlc)  
18 0.0004863 0.08107 b2217 rcsB -10.91 0.008593 172 -- 193 39 -- 59 response regulator in two-component regulatory system with RcsC and YojN  
19 0.0004926 0.08107 b0820 ybiT -10.62 0.010514 37 -- 84 2 -- 44 ABC-F family putative regulatory ATPase  
20 0.0005034 0.08107 b3962 sthA -8.00 0.060263 274 -- 291 37 -- 54 pyridine nucleotide transhydrogenase soluble  
21 0.000535 0.08206 b1639 mliC -10.27 0.013452 27 -- 40 8 -- 21 inhibitor of c-type lysozyme membrane-bound; putative lipoprotein  
22 0.0006536 0.09021 b1245 oppC -8.46 0.045181 270 -- 288 37 -- 58 oligopeptide ABC transporter permease  
23 0.000685 0.09021 b3780 rhlB -7.99 0.060609 254 -- 278 29 -- 60 ATP-dependent RNA helicase  
24 0.000694 0.09021 b2531 iscR -7.21 0.097486 53 -- 65 27 -- 41 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor  
25 0.0007384 0.09021 b3434 yhgN -11.94 0.004015 159 -- 197 7 -- 41 UPF0056 family inner membrane protein  
26 0.0007705 0.09021 b3991 thiG -9.33 0.025562 246 -- 261 25 -- 41 thiamine biosynthesis ThiGH complex subunit  
27 0.0008083 0.09021 b2711 norW -10.17 0.014477 99 -- 112 13 -- 26 NADH:flavorubredoxin oxidoreductase  
28 0.0008326 0.09021 b2563 acpS -7.40 0.086911 170 -- 193 37 -- 61 holo-[acyl-carrier-protein] synthase 1  
29 0.000834 0.09021 b2798 ygdG -11.41 0.005967 211 -- 245 24 -- 57 Ssb-binding protein misidentified as ExoIX  
30 0.0008402 0.09021 b2792 yqcC -12.92 0.001907 10 -- 25 38 -- 53 DUF446 family protein  
31 0.0009469 0.09599 b0166 dapD -11.60 0.005180 96 -- 124 11 -- 40 2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase  
32 0.0009536 0.09599 b0637 rsfS -12.32 0.003012 197 -- 230 23 -- 59 ribosomal silencing factor  
33 0.001071 0.1045 b2058 wcaB -10.41 0.012241 46 -- 64 25 -- 42 putative acyl transferase  
34 0.001265 0.1198 b0826 moeB -10.82 0.009172 276 -- 295 26 -- 46 molybdopterin synthase sulfurylase  
35 0.001338 0.121 b0405 queA -9.92 0.017135 73 -- 106 26 -- 60 S-adenosylmethionine:tRNA ribosyltransferase-isomerase  
36 0.001384 0.121 b2573 rpoE -5.96 0.197133 163 -- 178 25 -- 41 RNA polymerase sigma E factor  
37 0.00139 0.121 b2222 atoA -4.53 0.397320 265 -- 276 25 -- 38 acetyl-CoA:acetoacetyl-CoA transferase beta subunit  
38 0.00143 0.1212 b3315 rplV -7.95 0.062235 2 -- 19 23 -- 40 50S ribosomal subunit protein L22  
39 0.00159 0.1292 b1637 tyrS -8.51 0.043578 178 -- 203 5 -- 27 tyrosyl-tRNA synthetase  
40 0.001639 0.1292 b0156 erpA -9.82 0.018424 105 -- 133 14 -- 48 iron-sulfur cluster insertion protein  
41 0.001644 0.1292 b1918 yecS -7.37 0.088723 192 -- 214 37 -- 60 ABC family putative inner membrane permease  
42 0.001686 0.1293 b2733 mutS -6.21 0.172669 203 -- 222 25 -- 42 methyl-directed mismatch repair protein  
43 0.001794 0.1344 b0631 ybeD -7.18 0.099343 171 -- 193 16 -- 40 UPF0250 family protein  
44 0.001875 0.1369 b4485 ytfR -11.10 0.007490 215 -- 227 10 -- 22 putative sugar ABC transporter ATPase  
45 0.001912 0.1369 b0080 cra -5.81 0.213706 183 -- 197 38 -- 52 transcriptional repressor-activator for carbon metabolism  
46 0.002046 0.1433 b3106 yhaK -10.10 0.015122 97 -- 120 7 -- 28 redox-sensitive bicupin  
47 0.002119 0.1452 b0694 kdpE -6.96 0.113004 177 -- 189 26 -- 38 response regulator in two-component regulatory system with KdpD  
48 0.002202 0.1465 b3209 elbB -11.61 0.005163 95 -- 137 2 -- 41 isoprenoid biosynthesis protein with amidotransferase-like domain  
49 0.002267 0.1465 b0592 fepB -6.35 0.159662 143 -- 160 24 -- 40 ferrienterobactin ABC transporter periplasmic binding protein  
50 0.002273 0.1465 b4159 mscM -6.32 0.162358 72 -- 90 16 -- 34 mechanosensitive channel protein miniconductance  
51 0.002326 0.1469 b2780 pyrG -6.37 0.158020 19 -- 28 33 -- 42 CTP synthetase  
52 0.002466 0.1527 b3527 yhjJ -8.40 0.046956 207 -- 220 25 -- 41 putative periplasmic M16 family chaperone  
53 0.002646 0.1597 b1704 aroH -6.03 0.190589 111 -- 120 31 -- 40 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase tryptophan repressible  
54 0.002706 0.1597 b0200 gmhB -8.11 0.056337 123 -- 141 35 -- 53 D D-heptose 1 7-bisphosphate phosphatase  
55 0.002761 0.1597 b0238 gpt -5.76 0.219641 15 -- 42 30 -- 59 xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase  
56 0.002803 0.1597 b2514 hisS -5.93 0.201249 279 -- 295 24 -- 41 histidyl tRNA synthetase  
57 0.002825 0.1597 b2233 yfaL -10.30 0.013161 220 -- 233 34 -- 47 adhesin  
58 0.002968 0.1645 b0421 ispA -9.70 0.019970 54 -- 76 25 -- 47 geranyltranstransferase  
59 0.003153 0.1645 b1220 ychO -8.71 0.038404 242 -- 262 37 -- 56 putative invasin  
60 0.00317 0.1645 b0466 ybaM -6.37 0.157728 143 -- 158 25 -- 40 DUF2496 family protein  
61 0.003184 0.1645 b4112 basS -6.79 0.124428 7 -- 41 10 -- 54 sensory histidine kinase in two-component regulatory system with BasR  
62 0.00332 0.1645 b1305 pspB -5.29 0.278747 189 -- 201 34 -- 46 psp operon transcription co-activator  
63 0.003338 0.1645 b2671 ygaC -8.88 0.034356 231 -- 246 25 -- 40 uncharacterized protein  
64 0.003339 0.1645 b3166 truB -7.27 0.093914 187 -- 199 36 -- 48 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase  
65 0.003382 0.1645 b1739 osmE -4.35 0.428849 173 -- 228 7 -- 58 osmotically-inducible lipoprotein  
66 0.003432 0.1645 b0882 clpA -7.45 0.084488 282 -- 290 34 -- 42 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity  
67 0.003475 0.1645 b0416 nusB -6.41 0.154688 140 -- 154 27 -- 40 transcription antitermination protein  
68 0.003533 0.1645 b3650 spoT -9.27 0.026581 116 -- 140 36 -- 60 bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase  
69 0.00357 0.1645 b0571 cusR -5.90 0.203942 86 -- 99 6 -- 21 response regulator in two-component regulatory system with CusS b1969
70 0.003574 0.1645 b0145 dksA -6.64 0.135564 191 -- 197 39 -- 45 transcriptional regulator of rRNA transcription; DnaK suppressor protein  
71 0.00365 0.1656 b4478 dgoD -6.42 0.153775 171 -- 195 38 -- 57 D-galactonate dehydratase  
72 0.003773 0.1688 b1860 ruvB -7.81 0.067658 103 -- 111 38 -- 46 ATP-dependent DNA helicase component of RuvABC resolvasome  
73 0.004067 0.1794 b1244 oppB -5.52 0.247965 106 -- 113 36 -- 43 oligopeptide ABC transporter permease  
74 0.004124 0.1795 b2599 pheA -8.54 0.042758 34 -- 48 29 -- 42 chorismate mutase and prephenate dehydratase P-protein  
75 0.004391 0.1886 b3708 tnaA -6.02 0.191179 273 -- 300 28 -- 53 tryptophanase/L-cysteine desulfhydrase PLP-dependent  
76 0.004539 0.1924 b1722 ydiY -10.86 0.008894 80 -- 126 13 -- 55 acid-inducible putative outer membrane protein  
77 0.004637 0.1935 b0407 yajC -7.39 0.087827 147 -- 158 37 -- 48 SecYEG protein translocase auxillary subunit  
78 0.004685 0.1935 b3905 rhaS -7.96 0.061746 70 -- 86 26 -- 40 transcriptional activator of rhaBAD and rhaT  
79 0.005218 0.2128 b1264 trpE -7.84 0.066605 225 -- 250 34 -- 59 component I of anthranilate synthase  
80 0.005376 0.2146 b1520 yneE -6.66 0.134465 278 -- 284 34 -- 40 bestrophin family putative inner membrane protein  
81 0.005437 0.2146 b1073 flgB -5.23 0.286610 229 -- 247 36 -- 53 flagellar component of cell-proximal portion of basal-body rod  
82 0.005534 0.2146 b1342 ydaN -6.57 0.141434 180 -- 206 30 -- 54 putative Zn(II) transporter  
83 0.005546 0.2146 b0221 fadE -11.24 0.006780 20 -- 32 37 -- 49 acyl coenzyme A dehydrogenase  
84 0.005596 0.2146 b4065 yjcE -5.39 0.265673 197 -- 210 9 -- 22 putative cation/proton antiporter  
85 0.005692 0.2157 b4052 dnaB -8.38 0.047402 89 -- 103 26 -- 40 replicative DNA helicase  
86 0.005829 0.217 b2399 yfeD -9.44 0.023742 136 -- 182 13 -- 56 DUF1323 family putative DNA-binding protein  
87 0.005861 0.217 b3083 higB -4.01 0.492619 220 -- 233 28 -- 42 mRNA interferase toxin of the HigB-HigA toxin-antitoxin system  
88 0.006209 0.2266 b1643 ydhI -11.55 0.005389 141 -- 153 28 -- 40 DUF1656 family putative inner membrane efflux pump associated protein  
89 0.006302 0.2266 b3208 mtgA -4.90 0.336213 28 -- 47 28 -- 47 biosynthetic peptidoglycan transglycosylase  
90 0.006331 0.2266 b1710 btuE -7.57 0.078405 256 -- 270 25 -- 39 glutathione peroxidase  
91 0.006547 0.2317 b1323 tyrR -8.26 0.051378 202 -- 222 3 -- 23 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase  
92 0.006692 0.2343 b2421 cysM -10.79 0.009324 40 -- 63 37 -- 60 cysteine synthase B (O-acetylserine sulfhydrolase B)  
93 0.006966 0.2379 b0436 tig -6.81 0.123164 173 -- 190 25 -- 42 peptidyl-prolyl cis/trans isomerase (trigger factor)  
94 0.006975 0.2379 b1284 yciT -8.66 0.039674 34 -- 64 15 -- 42 global regulator of transcription; DeoR family  
95 0.007016 0.2379 b0464 acrR -8.52 0.043413 219 -- 228 37 -- 46 transcriptional repressor  
96 0.007122 0.239 b2060 wzc -5.51 0.249431 285 -- 291 37 -- 43 colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase  
97 0.007216 0.239 b2021 hisC -5.42 0.261518 59 -- 66 37 -- 44 histidinol-phosphate aminotransferase  
98 0.007325 0.239 b4171 miaA -8.40 0.046782 42 -- 58 5 -- 24 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase  
99 0.007347 0.239 b4348 hsdS -4.18 0.460078 133 -- 139 70 -- 76 specificity determinant for hsdM and hsdR  
100 0.007523 0.2423 b1744 astE -9.81 0.018546 117 -- 135 36 -- 53 succinylglutamate desuccinylase  
101 0.007657 0.2442 b3928 zapB -6.83 0.122013 220 -- 239 38 -- 54 FtsZ stabilizer septal ring assembly factor cell division stimulator  
102 0.008217 0.2595 b4220 tamA -7.38 0.088103 40 -- 47 39 -- 46 translocation and assembly module for autotransporter export outer membrane subunit  
103 0.00845 0.2642 b0936 ssuA -4.91 0.333979 11 -- 31 10 -- 40 aliphatic sulfonate ABC transporter periplasmic binding protein  
104 0.008606 0.2665 b0956 matP -4.56 0.392859 215 -- 228 25 -- 38 Ter macrodomain organizer matS-binding protein  
105 0.008762 0.2688 b2735 ygbI -7.10 0.103888 185 -- 196 38 -- 49 DeoR family putative transcriptional regulator  
106 0.009044 0.2693 b3360 pabA -9.65 0.020637 134 -- 165 7 -- 41 aminodeoxychorismate synthase subunit II  
107 0.009263 0.2693 b3034 nudF -7.86 0.065629 202 -- 214 42 -- 54 ADP-ribose pyrophosphatase  
108 0.009338 0.2693 b0639 nadD -9.48 0.023112 42 -- 61 34 -- 53 nicotinic acid mononucleotide adenylyltransferase NAD(P)-dependent  
109 0.009396 0.2693 b1958 yedI -10.22 0.013950 83 -- 110 33 -- 54 DUF808 family inner membrane protein  
110 0.009505 0.2693 b0632 dacA -12.82 0.002052 146 -- 175 26 -- 57 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)  
111 0.009564 0.2693 b2040 rfbD -5.00 0.321114 87 -- 99 24 -- 42 dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit  
112 0.009574 0.2693 b2494 bepA -6.13 0.179960 208 -- 220 29 -- 41 OM protein maintenance and assembly metalloprotease and chaperone periplasmic  
113 0.009602 0.2693 b3237 argR -14.05 0.000763 205 -- 250 27 -- 60 l-arginine-responsive arginine metabolism regulon transcriptional regulator  
114 0.009652 0.2693 b2614 grpE -8.47 0.044767 262 -- 275 27 -- 41 heat shock protein  
115 0.009659 0.2693 b0155 clcA -5.80 0.214551 108 -- 124 25 -- 40 H(+)/Cl(-) exchange transporter  
116 0.009699 0.2693 b2708 srlQ -8.08 0.057211 196 -- 214 36 -- 49 D-arabinose 5-phosphate isomerase  
117 0.009786 0.2694 b1706 ydiU -6.16 0.177349 6 -- 27 36 -- 55 UPF0061 family protein  
118 0.009927 0.271 b1654 grxD -11.37 0.006167 180 -- 241 7 -- 60 glutaredoxin-4  
119 0.01022 0.2766 b0123 cueO -7.29 0.093095 47 -- 59 29 -- 41 multicopper oxidase (laccase)  
120 0.01039 0.2788 b2314 dedD -6.27 0.167184 42 -- 54 45 -- 58 membrane-anchored periplasmic protein involved in septation  
121 0.01057 0.2813 b0452 tesB -8.75 0.037433 210 -- 223 26 -- 40 acyl-CoA thioesterase 2  
122 0.01076 0.2828 b1908 yecA -7.65 0.074805 79 -- 96 18 -- 40 UPF0149 family protein  
123 0.0108 0.2828 b2606 rplS -6.81 0.122900 220 -- 252 37 -- 58 50S ribosomal subunit protein L19  
124 0.01089 0.2829 b0186 ldcC -10.51 0.011388 34 -- 66 24 -- 58 lysine decarboxylase 2 constitutive  
125 0.01132 0.2916 b4152 frdC -8.74 0.037729 137 -- 154 25 -- 41 fumarate reductase (anaerobic) membrane anchor subunit  
126 0.01159 0.2964 b3693 dgoK -8.44 0.045823 138 -- 160 34 -- 54 2-oxo-3-deoxygalactonate kinase  
127 0.01193 0.3024 b3625 waaY -10.33 0.012897 24 -- 38 26 -- 41 lipopolysaccharide core biosynthesis protein  
128 0.01225 0.3033 b3299 rpmJ -5.94 0.199813 193 -- 212 24 -- 42 50S ribosomal subunit protein L36  
129 0.01228 0.3033 b2249 yfaY -6.27 0.166554 88 -- 102 6 -- 22 inactive PncC family protein  
130 0.01234 0.3033 b2958 yggN -5.61 0.236844 227 -- 233 35 -- 41 DUF2884 family putative periplasmic protein  
131 0.01234 0.3033 b4139 aspA -5.03 0.315570 237 -- 252 26 -- 41 aspartate ammonia-lyase  
132 0.01257 0.3067 b2516 rodZ -8.98 0.032240 231 -- 240 34 -- 43 MreB assembly cytoskeletal protein  
133 0.0127 0.3077 b2452 eutH -4.80 0.352106 186 -- 194 38 -- 46 ethanolamine transporter  
134 0.01281 0.308 b3316 rpsS -8.71 0.038435 274 -- 288 39 -- 53 30S ribosomal subunit protein S19  
135 0.01294 0.3087 b3785 wzzE -4.46 0.409883 275 -- 291 39 -- 56 Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein  
136 0.01308 0.3087 b0131 panD -6.12 0.181240 260 -- 282 17 -- 40 aspartate 1-decarboxylase  
137 0.01315 0.3087 b2239 glpQ -7.04 0.107729 242 -- 248 36 -- 42 periplasmic glycerophosphodiester phosphodiesterase  
138 0.01322 0.3087 b1523 yneG -4.22 0.452951 267 -- 281 24 -- 41 DUF4186 family protein  
139 0.01338 0.3093 b3765 yifB -8.91 0.033732 103 -- 139 26 -- 57 magnesium chelatase family protein and putative transcriptional regulator  
140 0.01344 0.3093 b0426 yajQ -3.92 0.510019 240 -- 246 37 -- 43 phage Phi6 host factor ATP/GTP binding protein  
141 0.01363 0.3114 b0767 pgl -6.62 0.137481 178 -- 199 36 -- 55 6-phosphogluconolactonase  
142 0.01375 0.3119 b4166 queG -9.76 0.019130 257 -- 284 36 -- 60 epoxyqueuosine reductase cobalamine-stimulated; queosine biosynthesis  
143 0.01412 0.3181 b0642 leuS -6.82 0.122159 244 -- 266 37 -- 58 leucyl-tRNA synthetase  
144 0.01453 0.3231 b3614 yibQ -4.49 0.404320 261 -- 267 34 -- 40 putative polysaccharide deacetylase  
145 0.01456 0.3231 b1529 marC -5.50 0.250589 206 -- 227 39 -- 59 UPF0056 family inner membrane protein  
146 0.01469 0.3231 b0026 ileS -7.82 0.067581 147 -- 206 2 -- 59 isoleucyl-tRNA synthetase  
147 0.01475 0.3231 b0084 ftsI -4.75 0.360226 157 -- 172 24 -- 39 transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3  
148 0.01496 0.3255 b2202 napC -5.47 0.254772 189 -- 211 26 -- 46 quinol dehydrogenase electron source for NapAB  
149 0.01515 0.3274 b4196 ulaD -9.50 0.022893 140 -- 153 36 -- 49 3-keto-L-gulonate 6-phosphate decarboxylase  
150 0.01547 0.3321 b3736 atpF -5.86 0.208717 262 -- 272 37 -- 47 F0 sector of membrane-bound ATP synthase subunit b  
151 0.0157 0.3349 b0586 entF -8.26 0.051334 189 -- 199 37 -- 47 enterobactin synthase multienzyme complex component ATP-dependent  
152 0.01589 0.3359 b3428 glgP -3.42 0.610648 252 -- 258 36 -- 42 glycogen phosphorylase  
153 0.016 0.3359 b2167 fruA -4.10 0.476180 191 -- 199 37 -- 45 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
154 0.01606 0.3359 b2587 kgtP -4.55 0.394910 6 -- 12 52 -- 58 alpha-ketoglutarate transporter  
155 0.01672 0.3455 b1686 menI -4.77 0.356790 227 -- 235 36 -- 44 1 4-dihydroxy-2-naphthoyl-CoA hydrolase  
156 0.01673 0.3455 b0740 tolB -6.75 0.127692 202 -- 229 33 -- 61 periplasmic protein  
157 0.01701 0.3489 b3856 mobB -4.94 0.329991 189 -- 197 52 -- 60 molybdopterin-guanine dinucleotide biosynthesis protein B  
158 0.01725 0.3504 b3857 mobA -11.09 0.007545 184 -- 212 5 -- 35 molybdopterin-guanine dinucleotide synthase  
159 0.01739 0.3504 b2426 ucpA -8.50 0.043854 215 -- 229 36 -- 49 furfural resistance protein putative short-chain oxidoreductase  
160 0.01746 0.3504 b4542 yohO -11.65 0.004993 133 -- 150 23 -- 41 putative membrane protein  
161 0.01751 0.3504 b3394 hofN -4.92 0.333288 275 -- 286 18 -- 29 DNA catabolic putative fimbrial assembly protein  
162 0.01764 0.3508 b0654 gltJ -6.81 0.123116 18 -- 45 15 -- 42 glutamate/aspartate ABC transporter permease  
163 0.0182 0.3566 b0397 sbcC -8.10 0.056577 196 -- 210 26 -- 43 exonuclease dsDNA ATP-dependent  
164 0.01824 0.3566 b1854 pykA -7.33 0.090768 1 -- 31 25 -- 60 pyruvate kinase II  
165 0.01827 0.3566 b2937 speB -7.30 0.092452 5 -- 22 25 -- 41 agmatinase  
166 0.01873 0.3614 b0473 htpG -6.61 0.137913 119 -- 133 26 -- 39 protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase  
167 0.01879 0.3614 b4383 deoB -8.94 0.033088 90 -- 118 37 -- 59 phosphopentomutase  
168 0.01885 0.3614 b1792 yeaO -5.97 0.195997 133 -- 142 25 -- 34 DUF488 family protein  
169 0.01902 0.3625 b0858 ybjO -5.59 0.239654 140 -- 156 25 -- 43 DUF2593 family inner membrane protein  
170 0.01916 0.363 b1202 ycgV -6.78 0.125661 82 -- 88 39 -- 45 putative adhesin b2647
171 0.01957 0.3668 b2498 upp -5.84 0.210430 244 -- 265 42 -- 61 uracil phosphoribosyltransferase  
172 0.01959 0.3668 b0336 codB -6.02 0.190787 88 -- 108 28 -- 40 cytosine transporter  
173 0.01972 0.3669 b3426 glpD -5.91 0.203159 207 -- 224 3 -- 20 sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding  
174 0.01992 0.3669 b1098 tmk -8.25 0.051647 183 -- 196 29 -- 42 thymidylate kinase  
175 0.01993 0.3669 b0183 rnhB -5.94 0.199165 195 -- 215 23 -- 41 ribonuclease HII degrades RNA of DNA-RNA hybrids  
176 0.02022 0.37 b0495 ybbA -5.55 0.244939 212 -- 247 24 -- 59 putative ABC transporter ATPase  
177 0.02045 0.3721 b3148 yraN -6.85 0.120614 263 -- 276 37 -- 54 UPF0102 family protein  
178 0.02074 0.3753 b4324 uxuR -9.92 0.017203 196 -- 210 8 -- 22 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor  
179 0.02107 0.3768 b3226 nanR -7.22 0.096643 281 -- 296 26 -- 41 sialic acid-inducible nan operon repressor  
180 0.02111 0.3768 b2753 iap -4.77 0.357003 164 -- 179 25 -- 40 aminopeptidase in alkaline phosphatase isozyme conversion  
181 0.0215 0.3768 b3843 ubiD -7.81 0.067872 2 -- 28 14 -- 40 3-octaprenyl-4-hydroxybenzoate decarboxylase  
182 0.02157 0.3768 b0887 cydD -7.84 0.066788 30 -- 38 33 -- 41 glutathione/cysteine ABC transporter export permease/ATPase  
183 0.02165 0.3768 b4201 priB -4.41 0.419305 289 -- 298 45 -- 54 primosomal protein N  
184 0.02168 0.3768 b4380 yjjI -6.70 0.131310 12 -- 49 9 -- 40 DUF3029 family protein putative glycine radical enzyme  
185 0.02171 0.3768 b0059 rapA -7.86 0.065955 35 -- 74 2 -- 42 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase  
186 0.02184 0.3768 b1256 ompW -5.92 0.201836 13 -- 38 30 -- 57 outer membrane protein W  
187 0.02188 0.3768 b3065 rpsU -8.54 0.042773 188 -- 200 37 -- 49 30S ribosomal subunit protein S21  
188 0.02199 0.3768 b3774 ilvC -7.43 0.085257 172 -- 181 37 -- 46 ketol-acid reductoisomerase NAD(P)-binding  
189 0.02233 0.3796 b3417 malP -8.63 0.040366 227 -- 245 35 -- 53 maltodextrin phosphorylase  
190 0.02239 0.3796 b0724 sdhB -6.89 0.117799 143 -- 176 24 -- 60 succinate dehydrogenase FeS subunit  
191 0.02253 0.38 b3186 rplU -5.10 0.305418 95 -- 102 34 -- 41 50S ribosomal subunit protein L21  
192 0.02295 0.3851 b1282 yciH -4.88 0.338940 8 -- 32 15 -- 33 initiation factor function partial mimic SUI1 family  
193 0.0233 0.3864 b1563 relE -9.36 0.025073 16 -- 27 29 -- 40 Qin prophage; toxin of the RelE-RelB toxin-antitoxin system  
194 0.02335 0.3864 b4182 yjfJ -9.08 0.030148 209 -- 238 10 -- 37 PspA/IM30 family protein  
195 0.02349 0.3864 b3982 nusG -7.66 0.074558 21 -- 55 24 -- 55 transcription termination factor  
196 0.02353 0.3864 b1948 fliP -9.61 0.021211 171 -- 185 45 -- 59 flagellar biosynthesis protein  
197 0.0237 0.3864 b4001 yjaH -6.58 0.140477 149 -- 175 29 -- 57 DUF1481 family putative lipoprotein  
198 0.02375 0.3864 b3946 fsaB -8.18 0.053967 105 -- 117 26 -- 40 fructose-6-phosphate aldolase 2  
199 0.02405 0.3893 b2412 zipA -4.86 0.342002 121 -- 136 25 -- 40 FtsZ stabilizer  
200 0.02417 0.3893 b1747 astA -6.36 0.159223 49 -- 56 39 -- 46 arginine succinyltransferase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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