15 |
0.0008498 |
0.1886 |
b4254 |
argI |
-15.11 |
0.025648 |
62 -- 84 |
167 -- 185 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________61______________________85\n_____________|_______________________|\n5'-UUC...GUCCU__________UUAUU________CCACU...AUA-3'\n______________GCCGAUACUC_____GUCACACA\n______________:||:||||||_____||||||||\n______________UGGUUAUGAG_____CAGUGUGU\n3'-UUU...AAAUG__________U____________ACUAC...UAG-5'\n_____________|_______________________|\n_____________186_____________________166\n |
78 -- 84 |
167 -- 173 |
-24.735 kcal/mol |
3.62809 kcal/mol |
5.02083 kcal/mol |
61 85@LB@ | |@LB@5'-UUC...GUCCU UUAUU CCACU...AUA-3'@LB@ GCCGAUACUC GUCACACA@LB@ :||:|||||| ||||||||@LB@ UGGUUAUGAG CAGUGUGU@LB@3'-UUU...AAAUG U ACUAC...UAG-5'@LB@ | |@LB@ 186 166@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -24.735 kcal/mol@LB@Unfolding Energy - mRNA 3.62809 kcal/mol@LB@Unfolding Energy - sRNA 5.02083 kcal/mol@LB@@LB@Position - mRNA 62 -- 84@LB@Position - sRNA 167 -- 185@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 167 -- 173@LB@ |
151 |
0.01691 |
0.3749 |
b2442 |
intZ |
-12.49 |
0.088679 |
278 -- 291 |
17 -- 31 |
CPZ-55 prophage; putative phage integrase |
b2349 |
_____________277_________________292\n_____________|___________________|\n5'-ACA...AAACU____________C_G____CGGGG...UGC-3'\n______________CACCGAU__UCA_U_ACGC\n______________||||:||__|||_|_||:|\n______________GUGGUUA__AGU_A_UGUG\n3'-UUU...AAAAU_______UG___C_G____UACUA...UAG-5'\n_____________|___________________|\n_____________32__________________16\n |
269 -- 275 |
180 -- 186 |
-14.1411 kcal/mol |
1.5591 kcal/mol |
4.88042 kcal/mol |
277 292@LB@ | |@LB@5'-ACA...AAACU C G CGGGG...UGC-3'@LB@ CACCGAU UCA U ACGC@LB@ ||||:|| ||| | ||:|@LB@ GUGGUUA AGU A UGUG@LB@3'-UUU...AAAAU UG C G UACUA...UAG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -14.1411 kcal/mol@LB@Unfolding Energy - mRNA 1.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.88042 kcal/mol@LB@@LB@Position - mRNA 278 -- 291@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 180 -- 186@LB@ |
182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
41 |
0.003653 |
0.2912 |
b2842 |
kduD |
-13.01 |
0.069205 |
14 -- 50 |
128 -- 174 |
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase |
b4266 b2774 |
_____________13_______________________________________________51\n_____________|________________________________________________|\n5'-CCG...AACGC______U____________________GAG____________G_____CCCGA...CGG-3'\n______________GUCAUA_UGUGAUGCA_______UAAC___CAG____GCGGU_AUCUC\n______________||||:|_::|||||||_______:|||___|||____|||||_|||:|\n______________CAGUGU_GUACUACGU_______GUUG___GUC____CGCCA_UAGGG\n3'-UUU...UGAGU________________CCGUUCA____AAA___UUAA_____G_____UGACG...UAG-5'\n_____________|________________________________________________|\n_____________175______________________________________________127\n |
23 -- 29 |
160 -- 166 |
-35.8105 kcal/mol |
9.71011 kcal/mol |
15.5834 kcal/mol |
13 51@LB@ | |@LB@5'-CCG...AACGC U GAG G CCCGA...CGG-3'@LB@ GUCAUA UGUGAUGCA UAAC CAG GCGGU AUCUC@LB@ ||||:| ::||||||| :||| ||| ||||| |||:|@LB@ CAGUGU GUACUACGU GUUG GUC CGCCA UAGGG@LB@3'-UUU...UGAGU CCGUUCA AAA UUAA G UGACG...UAG-5'@LB@ | |@LB@ 175 127@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -35.8105 kcal/mol@LB@Unfolding Energy - mRNA 9.71011 kcal/mol@LB@Unfolding Energy - sRNA 15.5834 kcal/mol@LB@@LB@Position - mRNA 14 -- 50@LB@Position - sRNA 128 -- 174@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 160 -- 166@LB@ |
1 |
0 |
0 |
b0069 |
sgrR |
-186.00 |
0.000000 |
1 -- 133 |
1 -- 133 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
______________1____________________________________________________________________________________________________________________________________134\n______________|____________________________________________________________________________________________________________________________________|\n___________5'-_____________________________________________________________________________________________________________________________________GUUAG...UGA-3'\n______________CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG\n3'-UUU...CGCCA_____________________________________________________________________________________________________________________________________-5'\n_____________|____________________________________________________________________________________________________________________________________|\n_____________134__________________________________________________________________________________________________________________________________1\n |
127 -- 133 |
1 -- 7 |
-280.35 kcal/mol |
42.3709 kcal/mol |
58.1542 kcal/mol |
1 134@LB@ | |@LB@ 5'- GUUAG...UGA-3'@LB@ CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG@LB@3'-UUU...CGCCA -5'@LB@ | |@LB@ 134 1@LB@@LB@@LB@Energy -186.00 kcal/mol@LB@Hybridization Energy -280.35 kcal/mol@LB@Unfolding Energy - mRNA 42.3709 kcal/mol@LB@Unfolding Energy - sRNA 58.1542 kcal/mol@LB@@LB@Position - mRNA 1 -- 133@LB@Position - sRNA 1 -- 133@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 1 -- 7@LB@ |
2 |
4.964e-05 |
0.08352 |
b0475 |
hemH |
-12.83 |
0.075395 |
238 -- 275 |
45 -- 93 |
ferrochelatase |
|
_____________237______________________________________________________________________276\n_____________|________________________________________________________________________|\n5'-CGG...AGACU_______________C__________AAACCU_____________C_______C_C_______C___A____UAAAA...GCG-3'\n______________AAAACC____GGUAU___CUGCUGGC______GGGU______ACG_CCGAUGC_C___CACAC_UGA_GCGG\n______________||||||____|||||___||||||||______||||______||:_||:||:|_|___|||||_|||_||:|\n______________UUUUGG____CCAUA___GACGACCG______CCCA______UGU_GGUUAUG_G___GUGUG_ACU_CGUC\n_______3'-UUUU______UCGU_____UUA__________________CUAAAA___________A_UCA_____U___A____CGUUC...UAG-5'\n_____________|________________________________________________________________________|\n_____________94_______________________________________________________________________44\n |
247 -- 253 |
178 -- 184 |
-50.8068 kcal/mol |
15.6732 kcal/mol |
22.9013 kcal/mol |
237 276@LB@ | |@LB@5'-CGG...AGACU C AAACCU C C C C A UAAAA...GCG-3'@LB@ AAAACC GGUAU CUGCUGGC GGGU ACG CCGAUGC C CACAC UGA GCGG@LB@ |||||| ||||| |||||||| |||| ||: ||:||:| | ||||| ||| ||:|@LB@ UUUUGG CCAUA GACGACCG CCCA UGU GGUUAUG G GUGUG ACU CGUC@LB@ 3'-UUUU UCGU UUA CUAAAA A UCA U A CGUUC...UAG-5'@LB@ | |@LB@ 94 44@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -50.8068 kcal/mol@LB@Unfolding Energy - mRNA 15.6732 kcal/mol@LB@Unfolding Energy - sRNA 22.9013 kcal/mol@LB@@LB@Position - mRNA 238 -- 275@LB@Position - sRNA 45 -- 93@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 178 -- 184@LB@ |
3 |
8.668e-05 |
0.08442 |
b3892 |
fdoI |
-15.80 |
0.018551 |
255 -- 278 |
1 -- 22 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________254_________________279\n_____________|___________________|\n5'-CCA...UGGAU____G___UC_________CUGGC...UGG-3'\n______________CACC_CCU__UGCUUCAUC\n______________||||_|||__|||||||||\n______________GUGG_GGA__ACGAAGUAG\n3'-UUU...ACCCC____G______________-5'\n_____________|__________________|\n_____________23_________________1\n |
272 -- 278 |
1 -- 7 |
-24.2792 kcal/mol |
4.44512 kcal/mol |
7.16879 kcal/mol |
254 279@LB@ | |@LB@5'-CCA...UGGAU G UC CUGGC...UGG-3'@LB@ CACC CCU UGCUUCAUC@LB@ |||| ||| |||||||||@LB@ GUGG GGA ACGAAGUAG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -24.2792 kcal/mol@LB@Unfolding Energy - mRNA 4.44512 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 255 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
4 |
0.0001068 |
0.08442 |
b2069 |
yegD |
-18.64 |
0.004982 |
22 -- 145 |
51 -- 187 |
Hsp70 chaperone family protein |
|
_____________21_________________146\n_____________|__________________|\n5'-CAC...ACAUC__________A_______CGCUU...UGC-3'\n______________GCAUCUCCUU__UUCAUC\n______________|||:|:||||__||||||\n______________CGUGGGGGAA__AAGUAG\n3'-UUU...UACCC__________CG______-5'\n_____________|_________________|\n_____________188_______________51\n |
72 -- 78 |
9 -- 15 |
-21.4418 kcal/mol |
1.05479 kcal/mol |
7.2533 kcal/mol |
21 146@LB@ | |@LB@5'-CAC...ACAUC A CGCUU...UGC-3'@LB@ GCAUCUCCUU UUCAUC@LB@ |||:|:|||| ||||||@LB@ CGUGGGGGAA AAGUAG@LB@3'-UUU...UACCC CG -5'@LB@ | |@LB@ 188 51@LB@@LB@@LB@Energy -18.64 kcal/mol@LB@Hybridization Energy -21.4418 kcal/mol@LB@Unfolding Energy - mRNA 1.05479 kcal/mol@LB@Unfolding Energy - sRNA 7.2533 kcal/mol@LB@@LB@Position - mRNA 22 -- 145@LB@Position - sRNA 51 -- 187@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 9 -- 15@LB@ |
5 |
0.0001254 |
0.08442 |
b4481 |
wecF |
-11.27 |
0.155862 |
165 -- 206 |
62 -- 99 |
TDP-Fuc4NAc:lipidIIFuc4NAc transferase |
|
_____________164_____________________________________207\n_____________|_______________________________________|\n5'-UUU...GCGUC___G_____U_____UC__GC___________CAG____CUUUA...ACG-3'\n______________ACU_CGGUU_UAUAU__UG__GG_AAGUCAGC___UUCA\n______________|||_|:||:_:|:||__||__||_||||||:|___||||\n______________UGA_GUCAG_GUGUA__AC__CC_UUCAGUUG___AAGU\n3'-UUU...GGUUA_________U_____CU__GU__G________A______CUUAA...UAG-5'\n_____________|_______________________________________|\n_____________100_____________________________________61\n |
54 -- 60 |
149 -- 155 |
-25.8626 kcal/mol |
10.7241 kcal/mol |
8.38318 kcal/mol |
164 207@LB@ | |@LB@5'-UUU...GCGUC G U UC GC CAG CUUUA...ACG-3'@LB@ ACU CGGUU UAUAU UG GG AAGUCAGC UUCA@LB@ ||| |:||: :|:|| || || ||||||:| ||||@LB@ UGA GUCAG GUGUA AC CC UUCAGUUG AAGU@LB@3'-UUU...GGUUA U CU GU G A CUUAA...UAG-5'@LB@ | |@LB@ 100 61@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -25.8626 kcal/mol@LB@Unfolding Energy - mRNA 10.7241 kcal/mol@LB@Unfolding Energy - sRNA 8.38318 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 62 -- 99@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 149 -- 155@LB@ |
6 |
0.0003621 |
0.1842 |
b3242 |
aaeX |
-9.38 |
0.356280 |
9 -- 19 |
125 -- 135 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________8_________20\n_____________|_________|\n5'-GCG...CAUAA_________UAAUA...GGG-3'\n______________CAGUUACGC\n______________||||:||:|\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________136_______124\n |
75 -- 81 |
168 -- 174 |
-12.5845 kcal/mol |
1.53643 kcal/mol |
0.276974 kcal/mol |
8 20@LB@ | |@LB@5'-GCG...CAUAA UAAUA...GGG-3'@LB@ CAGUUACGC@LB@ ||||:||:|@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 136 124@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -12.5845 kcal/mol@LB@Unfolding Energy - mRNA 1.53643 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 9 -- 19@LB@Position - sRNA 125 -- 135@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 168 -- 174@LB@ |
7 |
0.0005448 |
0.1842 |
b1912 |
pgsA |
-14.68 |
0.031521 |
247 -- 274 |
111 -- 134 |
phosphatidylglycerophosphate synthetase |
|
_____________246__________________________275\n_____________|____________________________|\n5'-GUC...CAUCC_________UCUU_______________UCUGC...UUG-3'\n______________UUAUCCCAU____UGUAUUGGUCUUUUA\n______________|:||||||:____||:||::|||:||:|\n______________AGUAGGGUG____ACGUAGUCAGGAAGU\n3'-UUU...ACGCC____________________________UCGUA...UAG-5'\n_____________|____________________________|\n_____________135__________________________110\n |
268 -- 274 |
111 -- 117 |
-27.9222 kcal/mol |
1.79949 kcal/mol |
14.1586 kcal/mol |
246 275@LB@ | |@LB@5'-GUC...CAUCC UCUU UCUGC...UUG-3'@LB@ UUAUCCCAU UGUAUUGGUCUUUUA@LB@ |:||||||: ||:||::|||:||:|@LB@ AGUAGGGUG ACGUAGUCAGGAAGU@LB@3'-UUU...ACGCC UCGUA...UAG-5'@LB@ | |@LB@ 135 110@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -27.9222 kcal/mol@LB@Unfolding Energy - mRNA 1.79949 kcal/mol@LB@Unfolding Energy - sRNA 14.1586 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 111 -- 134@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 111 -- 117@LB@ |
8 |
0.0005643 |
0.1842 |
b2557 |
purL |
-10.01 |
0.273478 |
129 -- 143 |
111 -- 124 |
phosphoribosylformyl-glycineamide synthetase |
|
_____________128______________144\n_____________|________________|\n5'-AGG...UUGGG________AA______AAGAC...UUU-3'\n______________UACACCGA__GCUUAG\n______________||||||:|__:||:||\n______________AUGUGGUU__UGAGUC\n3'-UUU...CUAAA________A_______AGUGU...UAG-5'\n_____________|________________|\n_____________125______________110\n |
172 -- 178 |
181 -- 187 |
-14.8421 kcal/mol |
1.97129 kcal/mol |
3.669 kcal/mol |
128 144@LB@ | |@LB@5'-AGG...UUGGG AA AAGAC...UUU-3'@LB@ UACACCGA GCUUAG@LB@ ||||||:| :||:||@LB@ AUGUGGUU UGAGUC@LB@3'-UUU...CUAAA A AGUGU...UAG-5'@LB@ | |@LB@ 125 110@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -14.8421 kcal/mol@LB@Unfolding Energy - mRNA 1.97129 kcal/mol@LB@Unfolding Energy - sRNA 3.669 kcal/mol@LB@@LB@Position - mRNA 129 -- 143@LB@Position - sRNA 111 -- 124@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 181 -- 187@LB@ |
9 |
0.0005653 |
0.1842 |
b3527 |
yhjJ |
-12.58 |
0.084694 |
198 -- 237 |
133 -- 170 |
putative periplasmic M16 family chaperone |
|
_____________197__________________________________________________238\n_____________|____________________________________________________|\n5'-CUC...GUUGA____GGGUU______CA_______CAAAAAU___________CGG_______UGCUG...GGC-3'\n______________UCAG_____CACAUG____GGGCA_______UCGACUUUUAG____GCGGUU\n______________||||_____||||||____:||||_______||:|||||:||____|||||:\n______________AGUC_____GUGUAC____UCCGU_______AGUUGAAAGUC____CGCCAG\n3'-UUU...UUAUG____AGU________UACG_____UC________________UUAA______UAGGG...UAG-5'\n_____________|____________________________________________________|\n_____________171__________________________________________________132\n |
222 -- 228 |
143 -- 149 |
-37.5898 kcal/mol |
10.9006 kcal/mol |
12.7286 kcal/mol |
197 238@LB@ | |@LB@5'-CUC...GUUGA GGGUU CA CAAAAAU CGG UGCUG...GGC-3'@LB@ UCAG CACAUG GGGCA UCGACUUUUAG GCGGUU@LB@ |||| |||||| :|||| ||:|||||:|| |||||:@LB@ AGUC GUGUAC UCCGU AGUUGAAAGUC CGCCAG@LB@3'-UUU...UUAUG AGU UACG UC UUAA UAGGG...UAG-5'@LB@ | |@LB@ 171 132@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -37.5898 kcal/mol@LB@Unfolding Energy - mRNA 10.9006 kcal/mol@LB@Unfolding Energy - sRNA 12.7286 kcal/mol@LB@@LB@Position - mRNA 198 -- 237@LB@Position - sRNA 133 -- 170@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 143 -- 149@LB@ |
10 |
0.0006004 |
0.1842 |
b3656 |
yicI |
-12.42 |
0.091283 |
58 -- 101 |
169 -- 207 |
putative alpha-glucosidase |
|
_____________57_________102\n_____________|__________|\n5'-ACA...GAUAA__________G-3'\n______________UGAAAUGGUG\n______________|:||||:|||\n______________AUUUUAUCAC\n3'-UUU...GCGCC__________GACUA...UAG-5'\n_____________|__________|\n_____________208________168\n |
293 -- 299 |
40 -- 46 |
-9.13222 kcal/mol |
0.486237 kcal/mol |
4.51378 kcal/mol |
57 102@LB@ | |@LB@5'-ACA...GAUAA G-3'@LB@ UGAAAUGGUG@LB@ |:||||:|||@LB@ AUUUUAUCAC@LB@3'-UUU...GCGCC GACUA...UAG-5'@LB@ | |@LB@ 208 168@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -9.13222 kcal/mol@LB@Unfolding Energy - mRNA 0.486237 kcal/mol@LB@Unfolding Energy - sRNA 4.51378 kcal/mol@LB@@LB@Position - mRNA 58 -- 101@LB@Position - sRNA 169 -- 207@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 40 -- 46@LB@ |
11 |
0.0006963 |
0.1842 |
b1739 |
osmE |
-13.14 |
0.065080 |
250 -- 260 |
194 -- 204 |
osmotically-inducible lipoprotein |
|
_____________249_________261\n_____________|___________|\n5'-GAA...AACCA___________UGUAC...AGC-3'\n______________UGCUGGCGGGU\n______________|||||||||||\n______________ACGACCGCCCA\n3'-UUU...AUUAG___________CUAAA...UAG-5'\n_____________|___________|\n_____________205_________193\n |
254 -- 260 |
194 -- 200 |
-22.742 kcal/mol |
5.67651 kcal/mol |
8.00138 kcal/mol |
249 261@LB@ | |@LB@5'-GAA...AACCA UGUAC...AGC-3'@LB@ UGCUGGCGGGU@LB@ |||||||||||@LB@ ACGACCGCCCA@LB@3'-UUU...AUUAG CUAAA...UAG-5'@LB@ | |@LB@ 205 193@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -22.742 kcal/mol@LB@Unfolding Energy - mRNA 5.67651 kcal/mol@LB@Unfolding Energy - sRNA 8.00138 kcal/mol@LB@@LB@Position - mRNA 250 -- 260@LB@Position - sRNA 194 -- 204@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 194 -- 200@LB@ |
12 |
0.0007005 |
0.1842 |
b1101 |
ptsG |
-16.86 |
0.011310 |
173 -- 192 |
168 -- 187 |
fused glucose-specific PTS enzymes: IIB component/IIC component |
|
_____________172__________________193\n_____________|____________________|\n5'-CAU...AAAAA_____C________GA____UCUCA...GUU-3'\n______________GCACC_AUACUCAG__GCAC\n______________:||||_||||||||__:|||\n______________UGUGG_UAUGAGUC__UGUG\n3'-UUU...UAAAA_____U________AG____UACUA...UAG-5'\n_____________|____________________|\n_____________188__________________167\n |
180 -- 186 |
174 -- 180 |
-27.3381 kcal/mol |
3.90127 kcal/mol |
4.88067 kcal/mol |
172 193@LB@ | |@LB@5'-CAU...AAAAA C GA UCUCA...GUU-3'@LB@ GCACC AUACUCAG GCAC@LB@ :|||| |||||||| :|||@LB@ UGUGG UAUGAGUC UGUG@LB@3'-UUU...UAAAA U AG UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -16.86 kcal/mol@LB@Hybridization Energy -27.3381 kcal/mol@LB@Unfolding Energy - mRNA 3.90127 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 173 -- 192@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 174 -- 180@LB@ |
13 |
0.0007116 |
0.1842 |
b3052 |
hldE |
-13.53 |
0.054228 |
111 -- 134 |
141 -- 169 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________110______________135\n_____________|________________|\n5'-GCG...CGUGA________________CUGGC...CGC-3'\n______________AC_UGGUGCGGGCAAG\n______________||_||:|||:||||||\n______________UG_ACUACGUCCGUUC\n3'-UUU...CAGUG__U_____________AGUUG...UAG-5'\n_____________|________________|\n_____________170______________140\n |
119 -- 125 |
154 -- 160 |
-22.7709 kcal/mol |
5.4675 kcal/mol |
7.07904 kcal/mol |
110 135@LB@ | |@LB@5'-GCG...CGUGA CUGGC...CGC-3'@LB@ AC UGGUGCGGGCAAG@LB@ || ||:|||:||||||@LB@ UG ACUACGUCCGUUC@LB@3'-UUU...CAGUG U AGUUG...UAG-5'@LB@ | |@LB@ 170 140@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.7709 kcal/mol@LB@Unfolding Energy - mRNA 5.4675 kcal/mol@LB@Unfolding Energy - sRNA 7.07904 kcal/mol@LB@@LB@Position - mRNA 111 -- 134@LB@Position - sRNA 141 -- 169@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 154 -- 160@LB@ |
14 |
0.00083 |
0.1886 |
b2721 |
hycE |
-15.91 |
0.017607 |
169 -- 185 |
190 -- 205 |
hydrogenase 3 large subunit |
|
_____________168_______________186\n_____________|_________________|\n5'-UUC...UCUCC__________C______AAAGA...UGA-3'\n______________UUGCUGGCGG_GUGAUU\n______________:|||||||||_||||||\n______________GACGACCGCC_CACUAA\n3'-UUU...UAUUA_________________AAUGU...UAG-5'\n_____________|_________________|\n_____________206_______________189\n |
172 -- 178 |
196 -- 202 |
-26.9802 kcal/mol |
6.4269 kcal/mol |
9.06848 kcal/mol |
168 186@LB@ | |@LB@5'-UUC...UCUCC C AAAGA...UGA-3'@LB@ UUGCUGGCGG GUGAUU@LB@ :||||||||| ||||||@LB@ GACGACCGCC CACUAA@LB@3'-UUU...UAUUA AAUGU...UAG-5'@LB@ | |@LB@ 206 189@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -26.9802 kcal/mol@LB@Unfolding Energy - mRNA 6.4269 kcal/mol@LB@Unfolding Energy - sRNA 9.06848 kcal/mol@LB@@LB@Position - mRNA 169 -- 185@LB@Position - sRNA 190 -- 205@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 196 -- 202@LB@ |
16 |
0.0008966 |
0.1886 |
b0807 |
rlmF |
-16.29 |
0.014793 |
117 -- 160 |
51 -- 97 |
23S rRNA m(6)A1618 methyltransferase SAM-dependent |
|
_____________116_____________________________________________161\n_____________|_______________________________________________|\n5'-AUU...UUAAG___U_____AA______A_______________U__A_C________UUAUG...UCC-3'\n______________GUU_UGGGG____UGAU_AACGCAGCCAG_AUA_UU_C_CUGUCGCG\n______________|||_||||:____|:|:_||||||:||||_|:|_:|_|_||||||||\n______________CAA_ACCCU____AUUG_UUGCGUUGGUC_UGU_GA_G_GACAGCGC\n3'-UUU...AUUAG___C_____GCGA____G___________G___U__A_C________CAUUU...UAG-5'\n_____________|_______________________________________________|\n_____________98______________________________________________50\n |
154 -- 160 |
51 -- 57 |
-44.7843 kcal/mol |
10.0752 kcal/mol |
25.3667 kcal/mol |
116 161@LB@ | |@LB@5'-AUU...UUAAG U AA A U A C UUAUG...UCC-3'@LB@ GUU UGGGG UGAU AACGCAGCCAG AUA UU C CUGUCGCG@LB@ ||| ||||: |:|: ||||||:|||| |:| :| | ||||||||@LB@ CAA ACCCU AUUG UUGCGUUGGUC UGU GA G GACAGCGC@LB@3'-UUU...AUUAG C GCGA G G U A C CAUUU...UAG-5'@LB@ | |@LB@ 98 50@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -44.7843 kcal/mol@LB@Unfolding Energy - mRNA 10.0752 kcal/mol@LB@Unfolding Energy - sRNA 25.3667 kcal/mol@LB@@LB@Position - mRNA 117 -- 160@LB@Position - sRNA 51 -- 97@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 51 -- 57@LB@ |
17 |
0.001014 |
0.2007 |
b4032 |
malG |
-14.09 |
0.041561 |
127 -- 139 |
193 -- 205 |
maltose transporter subunit |
|
_____________126___________140\n_____________|_____________|\n5'-CGU...UCUUC_____________CGCUG...UGG-3'\n______________CUGCUGGUGGGUG\n______________|||||||:|||||\n______________GACGACCGCCCAC\n3'-UUU...UAUUA_____________UAAAA...UAG-5'\n_____________|_____________|\n_____________206___________192\n |
132 -- 138 |
194 -- 200 |
-26.9183 kcal/mol |
7.69341 kcal/mol |
9.06058 kcal/mol |
126 140@LB@ | |@LB@5'-CGU...UCUUC CGCUG...UGG-3'@LB@ CUGCUGGUGGGUG@LB@ |||||||:|||||@LB@ GACGACCGCCCAC@LB@3'-UUU...UAUUA UAAAA...UAG-5'@LB@ | |@LB@ 206 192@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -26.9183 kcal/mol@LB@Unfolding Energy - mRNA 7.69341 kcal/mol@LB@Unfolding Energy - sRNA 9.06058 kcal/mol@LB@@LB@Position - mRNA 127 -- 139@LB@Position - sRNA 193 -- 205@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 194 -- 200@LB@ |
18 |
0.001156 |
0.216 |
b3474 |
yhhT |
-13.05 |
0.067927 |
149 -- 189 |
169 -- 204 |
UPF0118 family putative transporter |
|
_____________148__________________________________________________________________190\n_____________|____________________________________________________________________|\n5'-GAC...GACGU____________UAAG____AGAAUAU________U_ACUCCCGC_____U______AAAA_______AGGAA...UCA-3'\n______________GAAAAUCAGCAG____AAUC_______UGCUGGCG_G________UACAC_UAAUAC____AGUCACA\n______________:||||:||||||____||||_______||||||||_|________|||||_:|||||____|||||||\n______________UUUUUGGUCGUC____UUAG_______ACGACCGC_C________AUGUG_GUUAUG____UCAGUGU\n________3'-UUU____________CAUA_____________________CACUAAA_____________AG_________GUACU...UAG-5'\n_____________|____________________________________________________________________|\n_____________205__________________________________________________________________168\n |
183 -- 189 |
169 -- 175 |
-48.4478 kcal/mol |
16.2259 kcal/mol |
18.3074 kcal/mol |
148 190@LB@ | |@LB@5'-GAC...GACGU UAAG AGAAUAU U ACUCCCGC U AAAA AGGAA...UCA-3'@LB@ GAAAAUCAGCAG AAUC UGCUGGCG G UACAC UAAUAC AGUCACA@LB@ :||||:|||||| |||| |||||||| | ||||| :||||| |||||||@LB@ UUUUUGGUCGUC UUAG ACGACCGC C AUGUG GUUAUG UCAGUGU@LB@ 3'-UUU CAUA CACUAAA AG GUACU...UAG-5'@LB@ | |@LB@ 205 168@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -48.4478 kcal/mol@LB@Unfolding Energy - mRNA 16.2259 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 149 -- 189@LB@Position - sRNA 169 -- 204@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 169 -- 175@LB@ |
19 |
0.001698 |
0.2633 |
b2575 |
trmN |
-12.50 |
0.088044 |
81 -- 92 |
14 -- 25 |
tRNA1(Val) (adenine(37)-N6)-methyltransferase |
|
_____________80___________93\n_____________|____________|\n5'-ACC...UACAU__G_________GUAAU...GUA-3'\n______________CC_UGCUUCGUC\n______________||_||||||:||\n______________GG_ACGAAGUAG\n3'-UUU...GUGGG__A_________-5'\n_____________|___________|\n_____________26__________14\n |
222 -- 228 |
1 -- 7 |
-15.2724 kcal/mol |
3.783 kcal/mol |
1.04836 kcal/mol |
80 93@LB@ | |@LB@5'-ACC...UACAU G GUAAU...GUA-3'@LB@ CC UGCUUCGUC@LB@ || ||||||:||@LB@ GG ACGAAGUAG@LB@3'-UUU...GUGGG A -5'@LB@ | |@LB@ 26 14@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -15.2724 kcal/mol@LB@Unfolding Energy - mRNA 3.783 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 81 -- 92@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
20 |
0.001715 |
0.2633 |
b3453 |
ugpB |
-12.22 |
0.100645 |
241 -- 257 |
18 -- 32 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________240______________258\n_____________|________________|\n5'-UUC...AAUUC_____U__________AAGAG...UGG-3'\n______________GCGCA_UCGGUACAAC\n______________:||||_:|:|:|||||\n______________UGCGU_GGUCGUGUUG\n3'-UUU...UUGGU_____U__________AAGCG...UAG-5'\n_____________|________________|\n_____________33_______________17\n |
180 -- 186 |
63 -- 69 |
-22.0099 kcal/mol |
5.49331 kcal/mol |
9.84719 kcal/mol |
240 258@LB@ | |@LB@5'-UUC...AAUUC U AAGAG...UGG-3'@LB@ GCGCA UCGGUACAAC@LB@ :|||| :|:|:|||||@LB@ UGCGU GGUCGUGUUG@LB@3'-UUU...UUGGU U AAGCG...UAG-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.0099 kcal/mol@LB@Unfolding Energy - mRNA 5.49331 kcal/mol@LB@Unfolding Energy - sRNA 9.84719 kcal/mol@LB@@LB@Position - mRNA 241 -- 257@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 63 -- 69@LB@ |
21 |
0.001755 |
0.2633 |
b3037 |
ygiB |
-10.05 |
0.269263 |
126 -- 141 |
3 -- 15 |
DUF1190 family protein |
|
_____________125______________142\n_____________|________________|\n5'-AAA...UUCUU_______CUC______AUUUC...UGC-3'\n______________CCCCCUU___GCUUCA\n______________|||||||___||||||\n______________GGGGGAA___CGAAGU\n3'-UUU...CCCGU________________AG-5'\n_____________|________________|\n_____________16_______________2\n |
126 -- 132 |
9 -- 15 |
-20.0074 kcal/mol |
1.89647 kcal/mol |
7.00663 kcal/mol |
125 142@LB@ | |@LB@5'-AAA...UUCUU CUC AUUUC...UGC-3'@LB@ CCCCCUU GCUUCA@LB@ ||||||| ||||||@LB@ GGGGGAA CGAAGU@LB@3'-UUU...CCCGU AG-5'@LB@ | |@LB@ 16 2@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -20.0074 kcal/mol@LB@Unfolding Energy - mRNA 1.89647 kcal/mol@LB@Unfolding Energy - sRNA 7.00663 kcal/mol@LB@@LB@Position - mRNA 126 -- 141@LB@Position - sRNA 3 -- 15@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 9 -- 15@LB@ |
22 |
0.001812 |
0.2633 |
b2566 |
era |
-10.12 |
0.260747 |
283 -- 292 |
16 -- 26 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________282________________293\n_____________|__________________|\n5'-UUG...AAUGA_________AA_______UGCGG...UCU-3'\n______________GCAUCGAUA___AGUUAC\n______________:||:|:|||___|||:||\n______________UGUGGUUAU___UCAGUG\n3'-UUU...UAAAA_________GAG______UGUAC...UAG-5'\n_____________|__________________|\n_____________27_________________15\n |
205 -- 211 |
181 -- 187 |
-15.5423 kcal/mol |
3.87874 kcal/mol |
4.86686 kcal/mol |
282 293@LB@ | |@LB@5'-UUG...AAUGA AA UGCGG...UCU-3'@LB@ GCAUCGAUA AGUUAC@LB@ :||:|:||| |||:||@LB@ UGUGGUUAU UCAGUG@LB@3'-UUU...UAAAA GAG UGUAC...UAG-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -15.5423 kcal/mol@LB@Unfolding Energy - mRNA 3.87874 kcal/mol@LB@Unfolding Energy - sRNA 4.86686 kcal/mol@LB@@LB@Position - mRNA 283 -- 292@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 181 -- 187@LB@ |
23 |
0.00185 |
0.2633 |
b3492 |
yhiN |
-11.85 |
0.119629 |
108 -- 154 |
124 -- 161 |
putative oxidoreductase |
|
_____________107_______________________________________155\n_____________|_________________________________________|\n5'-CGG...GGAAA_____G______U____AUAG____________________AUGUU...AUA-3'\n______________GGUUU_AUGCCA_UAUU_____GCGC_UGGUGC_GGCGGGU\n______________|:|||_|::|||_||:|_____:|:|_||:|||_|||::||\n______________CUAAA_UGUGGU_AUGA_____UGUG_ACUACG_CCGUUCA\n3'-UUU...GCCCA_____A______U____GUCAG____U______U_______GUUGA...UAG-5'\n_____________|_________________________________________|\n_____________162_______________________________________123\n |
239 -- 245 |
153 -- 159 |
-35.0652 kcal/mol |
11.4478 kcal/mol |
11.9045 kcal/mol |
107 155@LB@ | |@LB@5'-CGG...GGAAA G U AUAG AUGUU...AUA-3'@LB@ GGUUU AUGCCA UAUU GCGC UGGUGC GGCGGGU@LB@ |:||| |::||| ||:| :|:| ||:||| |||::||@LB@ CUAAA UGUGGU AUGA UGUG ACUACG CCGUUCA@LB@3'-UUU...GCCCA A U GUCAG U U GUUGA...UAG-5'@LB@ | |@LB@ 162 123@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -35.0652 kcal/mol@LB@Unfolding Energy - mRNA 11.4478 kcal/mol@LB@Unfolding Energy - sRNA 11.9045 kcal/mol@LB@@LB@Position - mRNA 108 -- 154@LB@Position - sRNA 124 -- 161@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 153 -- 159@LB@ |
24 |
0.001922 |
0.2633 |
b3017 |
ftsP |
-19.79 |
0.002953 |
203 -- 291 |
63 -- 135 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________202__________________________________________________________________________________________292\n_____________|____________________________________________________________________________________________|\n5'-GAC...AAUAU_________GUCG__________A_________C__G______CACU_____CA______GUUCCCCUGAAG____________________AGCAA...CGC-3'\n______________GUCA_CUCA____GCGUCAGUUC_UUCAGGCAU_GG__GAUUG____UUGUG__GGCGCU____________GCCAGCGCAGCCGG_GCAAC\n______________||||_|:||____||:|||||:|_||||:||||_||__:||:|____|||||__|:||||____________:|||:||||:||:|_:||||\n______________CAGU_GGGU____CGUAGUCAGG_AAGUUCGUA_CC__UUAGC____AACAC__CUGCGA____________UGGUUGCGUUGGUC_UGUUG\n3'-UUU...AACGC____A____GA_________________________AA______________C_______AU________________________G_____AAGCG...UAG-5'\n_____________|____________________________________________________________________________________________|\n_____________136__________________________________________________________________________________________62\n |
278 -- 284 |
71 -- 77 |
-82.7619 kcal/mol |
32.3928 kcal/mol |
37.2191 kcal/mol |
202 292@LB@ | |@LB@5'-GAC...AAUAU GUCG A C G CACU CA GUUCCCCUGAAG AGCAA...CGC-3'@LB@ GUCA CUCA GCGUCAGUUC UUCAGGCAU GG GAUUG UUGUG GGCGCU GCCAGCGCAGCCGG GCAAC@LB@ |||| |:|| ||:|||||:| ||||:|||| || :||:| ||||| |:|||| :|||:||||:||:| :||||@LB@ CAGU GGGU CGUAGUCAGG AAGUUCGUA CC UUAGC AACAC CUGCGA UGGUUGCGUUGGUC UGUUG@LB@3'-UUU...AACGC A GA AA C AU G AAGCG...UAG-5'@LB@ | |@LB@ 136 62@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -82.7619 kcal/mol@LB@Unfolding Energy - mRNA 32.3928 kcal/mol@LB@Unfolding Energy - sRNA 37.2191 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 63 -- 135@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
25 |
0.002009 |
0.2633 |
b0134 |
panB |
-9.88 |
0.290153 |
57 -- 67 |
176 -- 186 |
3-methyl-2-oxobutanoate hydroxymethyltransferase |
|
_____________56__________68\n_____________|___________|\n5'-CAG...AAAGC___________UCCAG...UUG-3'\n______________CACCAGUACUU\n______________|||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________187_________175\n |
61 -- 67 |
176 -- 182 |
-15.2136 kcal/mol |
0.973349 kcal/mol |
3.38772 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAGC UCCAG...UUG-3'@LB@ CACCAGUACUU@LB@ |||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 187 175@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2136 kcal/mol@LB@Unfolding Energy - mRNA 0.973349 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 176 -- 186@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 176 -- 182@LB@ |
26 |
0.002141 |
0.2633 |
b0183 |
rnhB |
-16.17 |
0.015603 |
251 -- 292 |
123 -- 175 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
______________251_______________________________________________________293\n______________|_________________________________________________________|\n___________5'-____________________________AG_G_______AAGAAUUAU__________AGUGU...UCC-3'\n______________AAUCUGCUGGCGGG___________CAG__A_UUAGUCA_________UGCAGG_AAG\n______________||||||||||||||___________||:__|_|:|||||_________||||||_|||\n______________UUAGACGACCGCCC___________GUU__U_AGUCAGU_________ACGUCC_UUC\n3'-UUU...CCAUA______________ACUAAAAUGUG___A__G_______GUGUACU________G___AGUUG...UAG-5'\n_____________|__________________________________________________________|\n_____________176________________________________________________________122\n |
22 -- 28 |
171 -- 177 |
-46.3072 kcal/mol |
12.4456 kcal/mol |
20.994 kcal/mol |
251 293@LB@ | |@LB@ 5'- AG G AAGAAUUAU AGUGU...UCC-3'@LB@ AAUCUGCUGGCGGG CAG A UUAGUCA UGCAGG AAG@LB@ |||||||||||||| ||: | |:||||| |||||| |||@LB@ UUAGACGACCGCCC GUU U AGUCAGU ACGUCC UUC@LB@3'-UUU...CCAUA ACUAAAAUGUG A G GUGUACU G AGUUG...UAG-5'@LB@ | |@LB@ 176 122@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -46.3072 kcal/mol@LB@Unfolding Energy - mRNA 12.4456 kcal/mol@LB@Unfolding Energy - sRNA 20.994 kcal/mol@LB@@LB@Position - mRNA 251 -- 292@LB@Position - sRNA 123 -- 175@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 171 -- 177@LB@ |
27 |
0.002233 |
0.2633 |
b3525 |
yhjH |
-10.03 |
0.271118 |
185 -- 216 |
151 -- 171 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________184_______________________________217\n_____________|_________________________________|\n5'-UUA...UUUAA__A___G_____CUU_____AUA__________UCCAG...CCU-3'\n______________AC_CAG__ACAU___UGAUG___AGGCAGGUUA\n______________||_|||__|||:___|||||___|||||:||:|\n______________UG_GUC__UGUG___ACUAC___UCCGUUCAGU\n3'-UUU...GGUUA__A___AG____U_______G____________UGAAA...UAG-5'\n_____________|_________________________________|\n_____________172_______________________________150\n |
209 -- 215 |
152 -- 158 |
-24.6278 kcal/mol |
4.97701 kcal/mol |
8.14531 kcal/mol |
184 217@LB@ | |@LB@5'-UUA...UUUAA A G CUU AUA UCCAG...CCU-3'@LB@ AC CAG ACAU UGAUG AGGCAGGUUA@LB@ || ||| |||: ||||| |||||:||:|@LB@ UG GUC UGUG ACUAC UCCGUUCAGU@LB@3'-UUU...GGUUA A AG U G UGAAA...UAG-5'@LB@ | |@LB@ 172 150@LB@@LB@@LB@Energy -10.03 kcal/mol@LB@Hybridization Energy -24.6278 kcal/mol@LB@Unfolding Energy - mRNA 4.97701 kcal/mol@LB@Unfolding Energy - sRNA 8.14531 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 151 -- 171@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 152 -- 158@LB@ |
28 |
0.002284 |
0.2633 |
b1114 |
mfd |
-18.81 |
0.004608 |
253 -- 297 |
50 -- 95 |
transcription-repair coupling factor |
|
_____________252______________298\n_____________|________________|\n5'-UUC...GCGUC___U____________CGGCG...AAA-3'\n______________UGC_GGGCGAGUUAAC\n______________|||_:|||:|||:|||\n______________ACG_UCCGUUCAGUUG\n3'-UUU...GUACU________________AAAGU...UAG-5'\n_____________|________________|\n_____________96_______________49\n |
262 -- 268 |
149 -- 155 |
-20.6961 kcal/mol |
4.60584 kcal/mol |
7.12854 kcal/mol |
252 298@LB@ | |@LB@5'-UUC...GCGUC U CGGCG...AAA-3'@LB@ UGC GGGCGAGUUAAC@LB@ ||| :|||:|||:|||@LB@ ACG UCCGUUCAGUUG@LB@3'-UUU...GUACU AAAGU...UAG-5'@LB@ | |@LB@ 96 49@LB@@LB@@LB@Energy -18.81 kcal/mol@LB@Hybridization Energy -20.6961 kcal/mol@LB@Unfolding Energy - mRNA 4.60584 kcal/mol@LB@Unfolding Energy - sRNA 7.12854 kcal/mol@LB@@LB@Position - mRNA 253 -- 297@LB@Position - sRNA 50 -- 95@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 149 -- 155@LB@ |
29 |
0.002294 |
0.2633 |
b0624 |
flc |
-16.49 |
0.013425 |
233 -- 293 |
118 -- 176 |
fluoride efflux channel dual topology membrane protein |
|
_____________232_____________________294\n_____________|_______________________|\n5'-AAA...CGGCG_______UA______C_______AAUCA...UUC-3'\n______________UUACACU_____UCA_UCAUACA\n______________||||||:_____|||_|||:|||\n______________AAUGUGG_____AGU_AGUGUGU\n3'-UUU...ACUAA_______UUAUG___C_______ACUAC...UAG-5'\n_____________|_______________________|\n_____________177_____________________117\n |
172 -- 178 |
167 -- 173 |
-16.8792 kcal/mol |
2.93634 kcal/mol |
5.08824 kcal/mol |
232 294@LB@ | |@LB@5'-AAA...CGGCG UA C AAUCA...UUC-3'@LB@ UUACACU UCA UCAUACA@LB@ ||||||: ||| |||:|||@LB@ AAUGUGG AGU AGUGUGU@LB@3'-UUU...ACUAA UUAUG C ACUAC...UAG-5'@LB@ | |@LB@ 177 117@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -16.8792 kcal/mol@LB@Unfolding Energy - mRNA 2.93634 kcal/mol@LB@Unfolding Energy - sRNA 5.08824 kcal/mol@LB@@LB@Position - mRNA 233 -- 293@LB@Position - sRNA 118 -- 176@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 167 -- 173@LB@ |
30 |
0.002398 |
0.2633 |
b0494 |
tesA |
-12.69 |
0.080698 |
14 -- 26 |
126 -- 138 |
acyl-CoA thioesterase 1 and protease I and lysophospholipase L1 |
|
_____________13____________27\n_____________|_____________|\n5'-UCC...AUGUA_____________CAGAC...UGG-3'\n______________GCGGUUGUCCCAC\n______________|||||::||||||\n______________CGCCAGUAGGGUG\n3'-UUU...CUUAA_____________ACGUA...UAG-5'\n_____________|_____________|\n_____________139___________125\n |
20 -- 26 |
126 -- 132 |
-24.3083 kcal/mol |
5.59054 kcal/mol |
8.249 kcal/mol |
13 27@LB@ | |@LB@5'-UCC...AUGUA CAGAC...UGG-3'@LB@ GCGGUUGUCCCAC@LB@ |||||::||||||@LB@ CGCCAGUAGGGUG@LB@3'-UUU...CUUAA ACGUA...UAG-5'@LB@ | |@LB@ 139 125@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -24.3083 kcal/mol@LB@Unfolding Energy - mRNA 5.59054 kcal/mol@LB@Unfolding Energy - sRNA 8.249 kcal/mol@LB@@LB@Position - mRNA 14 -- 26@LB@Position - sRNA 126 -- 138@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 126 -- 132@LB@ |
31 |
0.002426 |
0.2633 |
b2593 |
yfiH |
-12.28 |
0.097562 |
144 -- 222 |
126 -- 203 |
UPF0124 family protein |
|
_____________143___________________________________________________________________________223\n_____________|_____________________________________________________________________________|\n5'-CCA...AUUGA______GC______________AAGA_____AG_____________G____GG___U____AA__U_A_________AGUGG...CAC-3'\n______________GGUGAU___GCGCCGAU_UUCG____ACAUA__GAUG_____AAGU_GACU__UUA_GAGU__GC_G_UUGUCCCGC\n______________||||||___:|:||:||_:||:____|||:|__||||_____||||_:|||__|:|_||:|__||_|_|::||||:|\n______________CCACUA___UGUGGUUA_GAGU____UGUGU__CUAC_____UUCA_UUGA__AGU_CUUA__CG_C_AGUAGGGUG\n3'-UUU...ACCGC______AAA________U____CAG______A_____GUCCG____G____A_________A___C___________ACGUA...UAG-5'\n_____________|_____________________________________________________________________________|\n_____________204___________________________________________________________________________125\n |
216 -- 222 |
126 -- 132 |
-51.0225 kcal/mol |
17.9985 kcal/mol |
20.5417 kcal/mol |
143 223@LB@ | |@LB@5'-CCA...AUUGA GC AAGA AG G GG U AA U A AGUGG...CAC-3'@LB@ GGUGAU GCGCCGAU UUCG ACAUA GAUG AAGU GACU UUA GAGU GC G UUGUCCCGC@LB@ |||||| :|:||:|| :||: |||:| |||| |||| :||| |:| ||:| || | |::||||:|@LB@ CCACUA UGUGGUUA GAGU UGUGU CUAC UUCA UUGA AGU CUUA CG C AGUAGGGUG@LB@3'-UUU...ACCGC AAA U CAG A GUCCG G A A C ACGUA...UAG-5'@LB@ | |@LB@ 204 125@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -51.0225 kcal/mol@LB@Unfolding Energy - mRNA 17.9985 kcal/mol@LB@Unfolding Energy - sRNA 20.5417 kcal/mol@LB@@LB@Position - mRNA 144 -- 222@LB@Position - sRNA 126 -- 203@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 126 -- 132@LB@ |
32 |
0.002513 |
0.2642 |
b3456 |
livM |
-11.89 |
0.117100 |
251 -- 271 |
186 -- 206 |
branched-chain amino acid ABC transporter permease |
|
_____________250___________________________272\n_____________|_____________________________|\n5'-GCC...CUGCU______GCCG___________UG______CCGGA...CCA-3'\n______________GGUGAU_____ACCGGUAUUC__GGUCGC\n______________||||||_____|||::||:||__:|||:|\n______________CCACUA_____UGGUUAUGAG__UCAGUG\n3'-UUU...ACCGC______AAAUG__________________UGUAC...UAG-5'\n_____________|_____________________________|\n_____________207___________________________185\n |
169 -- 175 |
176 -- 182 |
-27.5836 kcal/mol |
14.0763 kcal/mol |
5.03772 kcal/mol |
250 272@LB@ | |@LB@5'-GCC...CUGCU GCCG UG CCGGA...CCA-3'@LB@ GGUGAU ACCGGUAUUC GGUCGC@LB@ |||||| |||::||:|| :|||:|@LB@ CCACUA UGGUUAUGAG UCAGUG@LB@3'-UUU...ACCGC AAAUG UGUAC...UAG-5'@LB@ | |@LB@ 207 185@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -27.5836 kcal/mol@LB@Unfolding Energy - mRNA 14.0763 kcal/mol@LB@Unfolding Energy - sRNA 5.03772 kcal/mol@LB@@LB@Position - mRNA 251 -- 271@LB@Position - sRNA 186 -- 206@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 176 -- 182@LB@ |
33 |
0.002591 |
0.2642 |
b0331 |
prpB |
-22.44 |
0.000909 |
137 -- 159 |
1 -- 22 |
2-methylisocitrate lyase |
|
_____________136__________________160\n_____________|____________________|\n5'-GUC...AUUGU_____A______________UUUAU...UGG-3'\n______________GGCAC_CCCCUUGCUUUGUC\n______________|||||_||||||||||::||\n______________CCGUG_GGGGAACGAAGUAG\n3'-UUU...GUACC____________________-5'\n_____________|___________________|\n_____________23__________________1\n |
153 -- 159 |
1 -- 7 |
-33.844 kcal/mol |
4.2272 kcal/mol |
8.43224 kcal/mol |
136 160@LB@ | |@LB@5'-GUC...AUUGU A UUUAU...UGG-3'@LB@ GGCAC CCCCUUGCUUUGUC@LB@ ||||| ||||||||||::||@LB@ CCGUG GGGGAACGAAGUAG@LB@3'-UUU...GUACC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -22.44 kcal/mol@LB@Hybridization Energy -33.844 kcal/mol@LB@Unfolding Energy - mRNA 4.2272 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
34 |
0.002769 |
0.2736 |
b2416 |
ptsI |
-14.05 |
0.042463 |
178 -- 225 |
128 -- 177 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________177_________________________________________226\n_____________|___________________________________________|\n5'-GUG...AAAAA_________AGUAAGGUAGGGU______UU______UU_____AUCCC...CCG-3'\n______________UCAGUCACA_____________UAUGAU__CAGGCA__UUAGC\n______________|||||||||_____________:|||||__||||||__|:|:|\n______________AGUCAGUGU_____________GUACUA__GUCCGU__AGUUG\n3'-UUU...UUAUG____________________________C_______UC_____AAAGU...UAG-5'\n_____________|___________________________________________|\n_____________178_________________________________________127\n |
180 -- 186 |
169 -- 175 |
-30.6202 kcal/mol |
5.78851 kcal/mol |
8.17404 kcal/mol |
177 226@LB@ | |@LB@5'-GUG...AAAAA AGUAAGGUAGGGU UU UU AUCCC...CCG-3'@LB@ UCAGUCACA UAUGAU CAGGCA UUAGC@LB@ ||||||||| :||||| |||||| |:|:|@LB@ AGUCAGUGU GUACUA GUCCGU AGUUG@LB@3'-UUU...UUAUG C UC AAAGU...UAG-5'@LB@ | |@LB@ 178 127@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -30.6202 kcal/mol@LB@Unfolding Energy - mRNA 5.78851 kcal/mol@LB@Unfolding Energy - sRNA 8.17404 kcal/mol@LB@@LB@Position - mRNA 178 -- 225@LB@Position - sRNA 128 -- 177@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 169 -- 175@LB@ |
35 |
0.002845 |
0.2736 |
b3887 |
dtd |
-14.98 |
0.027287 |
55 -- 74 |
191 -- 211 |
D-tyr-tRNA(Tyr) deacylase |
|
_____________54____________________75\n_____________|_____________________|\n5'-GGA...UCAUU______G______________CCCCA...UCG-3'\n______________UAUGGU_UGCUGGCGG_UGAU\n______________|||::|_|||||||||_||||\n______________AUAUUA_ACGACCGCC_ACUA\n3'-UUU...CGUCC______G_________C____AAAUG...UAG-5'\n_____________|_____________________|\n_____________212___________________190\n |
64 -- 70 |
196 -- 202 |
-27.702 kcal/mol |
6.2401 kcal/mol |
11.5765 kcal/mol |
54 75@LB@ | |@LB@5'-GGA...UCAUU G CCCCA...UCG-3'@LB@ UAUGGU UGCUGGCGG UGAU@LB@ |||::| ||||||||| ||||@LB@ AUAUUA ACGACCGCC ACUA@LB@3'-UUU...CGUCC G C AAAUG...UAG-5'@LB@ | |@LB@ 212 190@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -27.702 kcal/mol@LB@Unfolding Energy - mRNA 6.2401 kcal/mol@LB@Unfolding Energy - sRNA 11.5765 kcal/mol@LB@@LB@Position - mRNA 55 -- 74@LB@Position - sRNA 191 -- 211@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 196 -- 202@LB@ |
36 |
0.002935 |
0.2744 |
b3152 |
yraR |
-13.11 |
0.066158 |
241 -- 255 |
123 -- 138 |
putative nucleoside-diphosphate-sugar epimerase |
|
_____________240______________256\n_____________|________________|\n5'-ACU...GGUGG________________GGAUG...CGA-3'\n______________GCGGUCA_CCUGCUGC\n______________|||||||_||::||||\n______________CGCCAGU_GGGUGACG\n3'-UUU...CUUAA_______A________UAGUC...UAG-5'\n_____________|________________|\n_____________139______________122\n |
241 -- 247 |
132 -- 138 |
-26.7154 kcal/mol |
6.55898 kcal/mol |
13.7588 kcal/mol |
240 256@LB@ | |@LB@5'-ACU...GGUGG GGAUG...CGA-3'@LB@ GCGGUCA CCUGCUGC@LB@ ||||||| ||::||||@LB@ CGCCAGU GGGUGACG@LB@3'-UUU...CUUAA A UAGUC...UAG-5'@LB@ | |@LB@ 139 122@LB@@LB@@LB@Energy -13.11 kcal/mol@LB@Hybridization Energy -26.7154 kcal/mol@LB@Unfolding Energy - mRNA 6.55898 kcal/mol@LB@Unfolding Energy - sRNA 13.7588 kcal/mol@LB@@LB@Position - mRNA 241 -- 255@LB@Position - sRNA 123 -- 138@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 132 -- 138@LB@ |
37 |
0.00305 |
0.2773 |
b4084 |
alsK |
-13.69 |
0.050122 |
28 -- 80 |
50 -- 101 |
D-allose kinase |
|
_____________27__________________________________________________________81\n_____________|___________________________________________________________|\n5'-GCG...UACGA_____AG________G_________________________A__AAAAA___A_G____CAGGG...AAA-3'\n______________AAUUG__GU_GGACG_UU__CC__UGCAACCAG_GCAACUU_CG_____CUG_U_GCGG\n______________|||:|__||_|||||_||__||__:||||||||_:||||||_||_____|||_|_||||\n______________UUAGC__CA_CCUGC_AA__GG__GCGUUGGUC_UGUUGAA_GC_____GAC_A_CGCC\n3'-UUU...ACCAA_____AA__C_____G__UU__UU_________G____________________G____AUUUU...UAG-5'\n_____________|___________________________________________________________|\n_____________102_________________________________________________________49\n |
56 -- 62 |
61 -- 67 |
-47.5504 kcal/mol |
15.3524 kcal/mol |
25.4279 kcal/mol |
27 81@LB@ | |@LB@5'-GCG...UACGA AG G A AAAAA A G CAGGG...AAA-3'@LB@ AAUUG GU GGACG UU CC UGCAACCAG GCAACUU CG CUG U GCGG@LB@ |||:| || ||||| || || :|||||||| :|||||| || ||| | ||||@LB@ UUAGC CA CCUGC AA GG GCGUUGGUC UGUUGAA GC GAC A CGCC@LB@3'-UUU...ACCAA AA C G UU UU G G AUUUU...UAG-5'@LB@ | |@LB@ 102 49@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -47.5504 kcal/mol@LB@Unfolding Energy - mRNA 15.3524 kcal/mol@LB@Unfolding Energy - sRNA 25.4279 kcal/mol@LB@@LB@Position - mRNA 28 -- 80@LB@Position - sRNA 50 -- 101@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 61 -- 67@LB@ |
38 |
0.003319 |
0.2912 |
b3073 |
patA |
-6.81 |
0.814367 |
213 -- 222 |
107 -- 116 |
putrescine:2-oxoglutaric acid aminotransferase PLP-dependent |
|
_____________212________223\n_____________|__________|\n5'-CAU...GGUUA__________CAUCG...CAC-3'\n______________CCUUCGAGCG\n______________|||||:|||:\n______________GGAAGUUCGU\n3'-UUU...AGUCA__________ACCAA...UAG-5'\n_____________|__________|\n_____________117________106\n |
216 -- 222 |
107 -- 113 |
-14.0153 kcal/mol |
3.04157 kcal/mol |
5.58351 kcal/mol |
212 223@LB@ | |@LB@5'-CAU...GGUUA CAUCG...CAC-3'@LB@ CCUUCGAGCG@LB@ |||||:|||:@LB@ GGAAGUUCGU@LB@3'-UUU...AGUCA ACCAA...UAG-5'@LB@ | |@LB@ 117 106@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -14.0153 kcal/mol@LB@Unfolding Energy - mRNA 3.04157 kcal/mol@LB@Unfolding Energy - sRNA 5.58351 kcal/mol@LB@@LB@Position - mRNA 213 -- 222@LB@Position - sRNA 107 -- 116@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 107 -- 113@LB@ |
39 |
0.003509 |
0.2912 |
b1293 |
sapB |
-10.75 |
0.197427 |
9 -- 16 |
196 -- 203 |
antimicrobial peptide transport ABC transporter permease |
|
_____________8____________17\n_____________|____________|\n5'-UCG...UAUUU_______CA___GC-3'\n______________CACCCCU__UGC\n______________||||||:__|||\n______________GUGGGGG__ACG\n3'-UUU...ACCCC_______A____AAGUAG-5'\n_____________|____________|\n_____________204__________195\n |
287 -- 293 |
11 -- 17 |
-15.5024 kcal/mol |
0.267702 kcal/mol |
6.55606 kcal/mol |
8 17@LB@ | |@LB@5'-UCG...UAUUU CA GC-3'@LB@ CACCCCU UGC@LB@ ||||||: |||@LB@ GUGGGGG ACG@LB@3'-UUU...ACCCC A AAGUAG-5'@LB@ | |@LB@ 204 195@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.5024 kcal/mol@LB@Unfolding Energy - mRNA 0.267702 kcal/mol@LB@Unfolding Energy - sRNA 6.55606 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 196 -- 203@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 11 -- 17@LB@ |
40 |
0.003515 |
0.2912 |
b0188 |
tilS |
-11.97 |
0.112782 |
278 -- 295 |
116 -- 133 |
tRNA(Ile)-lysidine synthetase |
|
______________278__________________296\n______________|____________________|\n___________5'-_________GG____G_____CCUUG...UGC-3'\n______________CAUCGAUGC__CAGU_GCGCA\n______________||:|:||:|__||||_:|:||\n______________GUGGUUAUG__GUCA_UGUGU\n3'-UUU...AAAAU_________A_____G_____ACUAC...UAG-5'\n_____________|_____________________|\n_____________134___________________115\n |
3 -- 9 |
178 -- 184 |
-23.3684 kcal/mol |
8.15392 kcal/mol |
5.05466 kcal/mol |
278 296@LB@ | |@LB@ 5'- GG G CCUUG...UGC-3'@LB@ CAUCGAUGC CAGU GCGCA@LB@ ||:|:||:| |||| :|:||@LB@ GUGGUUAUG GUCA UGUGU@LB@3'-UUU...AAAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 134 115@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3684 kcal/mol@LB@Unfolding Energy - mRNA 8.15392 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 278 -- 295@LB@Position - sRNA 116 -- 133@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 178 -- 184@LB@ |
42 |
0.003683 |
0.2912 |
b2221 |
atoD |
-14.87 |
0.028783 |
141 -- 155 |
6 -- 19 |
acetyl-CoA:acetoacetyl-CoA transferase alpha subunit |
|
_____________140_____________156\n_____________|_______________|\n5'-UAU...AUUCU_____U_________AUUGC...CCC-3'\n______________GGCAC_CCCCUUGCU\n______________|||||_|||||||||\n______________CCGUG_GGGGAACGA\n3'-UUU...GUACC_______________AGUAG-5'\n_____________|_______________|\n_____________20______________5\n |
149 -- 155 |
6 -- 12 |
-27.0081 kcal/mol |
4.79018 kcal/mol |
8.30673 kcal/mol |
140 156@LB@ | |@LB@5'-UAU...AUUCU U AUUGC...CCC-3'@LB@ GGCAC CCCCUUGCU@LB@ ||||| |||||||||@LB@ CCGUG GGGGAACGA@LB@3'-UUU...GUACC AGUAG-5'@LB@ | |@LB@ 20 5@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -27.0081 kcal/mol@LB@Unfolding Energy - mRNA 4.79018 kcal/mol@LB@Unfolding Energy - sRNA 8.30673 kcal/mol@LB@@LB@Position - mRNA 141 -- 155@LB@Position - sRNA 6 -- 19@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 6 -- 12@LB@ |
43 |
0.003721 |
0.2912 |
b3232 |
zapE |
-10.85 |
0.189153 |
236 -- 256 |
70 -- 90 |
divisome ATPase |
|
_____________235___________257\n_____________|_____________|\n5'-AGG...AACGG____UU_______AACCG...AAA-3'\n______________CCUU__UUUCGUC\n______________||||__:|||:||\n______________GGAA__GAAGUAG\n3'-UUU...GUGGG____C________-5'\n_____________|____________|\n_____________91___________70\n |
146 -- 152 |
1 -- 7 |
-9.27362 kcal/mol |
0.691484 kcal/mol |
1.04836 kcal/mol |
235 257@LB@ | |@LB@5'-AGG...AACGG UU AACCG...AAA-3'@LB@ CCUU UUUCGUC@LB@ |||| :|||:||@LB@ GGAA GAAGUAG@LB@3'-UUU...GUGGG C -5'@LB@ | |@LB@ 91 70@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -9.27362 kcal/mol@LB@Unfolding Energy - mRNA 0.691484 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 236 -- 256@LB@Position - sRNA 70 -- 90@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
44 |
0.003817 |
0.292 |
b0967 |
rlmI |
-10.41 |
0.230051 |
81 -- 118 |
128 -- 161 |
23S rRNA m(5)C1962 methyltransferase SAM-dependent |
|
_____________80_________________________________119\n_____________|__________________________________|\n5'-CGU...UGAAC____C___AAACC_______UUAU_CA_______GACAU...AAG-3'\n______________UCGC_CGU_____CAGGCAA____G__GACUUUC\n______________||:|_|:|_____|||||||____|__:||||||\n______________AGUG_GUA_____GUCCGUU____C__UUGAAAG\n3'-UUU...GAGUC____U___CUAC_____________AG_______UCUUA...UAG-5'\n_____________|__________________________________|\n_____________162________________________________127\n |
95 -- 101 |
145 -- 151 |
-21.0542 kcal/mol |
5.99356 kcal/mol |
7.97203 kcal/mol |
80 119@LB@ | |@LB@5'-CGU...UGAAC C AAACC UUAU CA GACAU...AAG-3'@LB@ UCGC CGU CAGGCAA G GACUUUC@LB@ ||:| |:| ||||||| | :||||||@LB@ AGUG GUA GUCCGUU C UUGAAAG@LB@3'-UUU...GAGUC U CUAC AG UCUUA...UAG-5'@LB@ | |@LB@ 162 127@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -21.0542 kcal/mol@LB@Unfolding Energy - mRNA 5.99356 kcal/mol@LB@Unfolding Energy - sRNA 7.97203 kcal/mol@LB@@LB@Position - mRNA 81 -- 118@LB@Position - sRNA 128 -- 161@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 145 -- 151@LB@ |
45 |
0.003942 |
0.2948 |
b0686 |
ybfF |
-11.97 |
0.113030 |
234 -- 245 |
63 -- 74 |
acyl-CoA esterase |
|
_____________233__________246\n_____________|____________|\n5'-CUU...CACAA____________AAUUC...GCG-3'\n______________AACCAGCACAAU\n______________|||||||||||:\n______________UUGGUCGUGUUG\n3'-UUU...UUGCG____________AAGCG...UAG-5'\n_____________|____________|\n_____________75___________62\n |
239 -- 245 |
63 -- 69 |
-18.9732 kcal/mol |
1.15073 kcal/mol |
9.24135 kcal/mol |
233 246@LB@ | |@LB@5'-CUU...CACAA AAUUC...GCG-3'@LB@ AACCAGCACAAU@LB@ |||||||||||:@LB@ UUGGUCGUGUUG@LB@3'-UUU...UUGCG AAGCG...UAG-5'@LB@ | |@LB@ 75 62@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -18.9732 kcal/mol@LB@Unfolding Energy - mRNA 1.15073 kcal/mol@LB@Unfolding Energy - sRNA 9.24135 kcal/mol@LB@@LB@Position - mRNA 234 -- 245@LB@Position - sRNA 63 -- 74@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 63 -- 69@LB@ |
46 |
0.004081 |
0.2985 |
b2466 |
ypfG |
-10.37 |
0.233995 |
256 -- 280 |
68 -- 95 |
DUF1176 family protein |
|
_____________255_____281\n_____________|_______|\n5'-AAA...CAAAC_______UUAAU...UCA-3'\n______________GUCACAU\n______________||||||:\n______________CAGUGUG\n3'-UUU...UGAGU_______UACUA...UAG-5'\n_____________|_______|\n_____________96______67\n |
57 -- 63 |
168 -- 174 |
-9.42181 kcal/mol |
2.13246 kcal/mol |
0.260649 kcal/mol |
255 281@LB@ | |@LB@5'-AAA...CAAAC UUAAU...UCA-3'@LB@ GUCACAU@LB@ ||||||:@LB@ CAGUGUG@LB@3'-UUU...UGAGU UACUA...UAG-5'@LB@ | |@LB@ 96 67@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -9.42181 kcal/mol@LB@Unfolding Energy - mRNA 2.13246 kcal/mol@LB@Unfolding Energy - sRNA 0.260649 kcal/mol@LB@@LB@Position - mRNA 256 -- 280@LB@Position - sRNA 68 -- 95@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 168 -- 174@LB@ |
47 |
0.004619 |
0.3205 |
b4142 |
groS |
-15.85 |
0.018169 |
259 -- 271 |
196 -- 208 |
Cpn10 chaperonin GroES small subunit of GroESL |
|
_____________258_______________________________272\n_____________|_________________________________|\n5'-UGA...AACUA_____________CAUCGUUCUG__________UGCAG...CUA-3'\n______________AAUCUGCUGGCGG__________ACCG__GCUC\n______________|||||||||||||__________|||:__:|||\n______________UUAGACGACCGCC__________UGGU__UGAG\n3'-UUU...CCAUA_____________CACUAAAAUG____UA____UCAGU...UAG-5'\n_____________|_________________________________|\n_____________209_______________________________195\n |
265 -- 271 |
196 -- 202 |
-33.1058 kcal/mol |
10.148 kcal/mol |
14.8106 kcal/mol |
258 272@LB@ | |@LB@5'-UGA...AACUA CAUCGUUCUG UGCAG...CUA-3'@LB@ AAUCUGCUGGCGG ACCG GCUC@LB@ ||||||||||||| |||: :|||@LB@ UUAGACGACCGCC UGGU UGAG@LB@3'-UUU...CCAUA CACUAAAAUG UA UCAGU...UAG-5'@LB@ | |@LB@ 209 195@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -33.1058 kcal/mol@LB@Unfolding Energy - mRNA 10.148 kcal/mol@LB@Unfolding Energy - sRNA 14.8106 kcal/mol@LB@@LB@Position - mRNA 259 -- 271@LB@Position - sRNA 196 -- 208@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 196 -- 202@LB@ |
48 |
0.004626 |
0.3205 |
b3462 |
ftsX |
-13.20 |
0.063258 |
14 -- 27 |
192 -- 205 |
putative ABC transporter permease |
|
_____________13_____________28\n_____________|______________|\n5'-CAA...CGGUA__________AC__ACCGA...ACG-3'\n______________CUGCUGGCGG__GA\n______________||||||||||__||\n______________GACGACCGCC__CU\n3'-UUU...UAUUA__________CA__AAAAU...UAG-5'\n_____________|______________|\n_____________206____________191\n |
17 -- 23 |
196 -- 202 |
-23.0043 kcal/mol |
4.65554 kcal/mol |
9.06563 kcal/mol |
13 28@LB@ | |@LB@5'-CAA...CGGUA AC ACCGA...ACG-3'@LB@ CUGCUGGCGG GA@LB@ |||||||||| ||@LB@ GACGACCGCC CU@LB@3'-UUU...UAUUA CA AAAAU...UAG-5'@LB@ | |@LB@ 206 191@LB@@LB@@LB@Energy -13.20 kcal/mol@LB@Hybridization Energy -23.0043 kcal/mol@LB@Unfolding Energy - mRNA 4.65554 kcal/mol@LB@Unfolding Energy - sRNA 9.06563 kcal/mol@LB@@LB@Position - mRNA 14 -- 27@LB@Position - sRNA 192 -- 205@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 196 -- 202@LB@ |
49 |
0.004667 |
0.3205 |
b1277 |
ribA |
-9.86 |
0.291903 |
241 -- 249 |
16 -- 24 |
GTP cyclohydrolase II |
|
_____________240________250\n_____________|__________|\n5'-CCA...AAUAC__________UUAUC...UCG-3'\n______________AGAACCAGCA\n______________|:||||||||\n______________UUUUGGUCGU\n_______3'-UUUU__________CCAUA...UAG-5'\n_____________|__________|\n_____________25_________15\n |
178 -- 184 |
214 -- 220 |
-13.9783 kcal/mol |
2.87719 kcal/mol |
5.75438 kcal/mol |
240 250@LB@ | |@LB@5'-CCA...AAUAC UUAUC...UCG-3'@LB@ AGAACCAGCA@LB@ |:||||||||@LB@ UUUUGGUCGU@LB@ 3'-UUUU CCAUA...UAG-5'@LB@ | |@LB@ 25 15@LB@@LB@@LB@Energy -9.86 kcal/mol@LB@Hybridization Energy -13.9783 kcal/mol@LB@Unfolding Energy - mRNA 2.87719 kcal/mol@LB@Unfolding Energy - sRNA 5.75438 kcal/mol@LB@@LB@Position - mRNA 241 -- 249@LB@Position - sRNA 16 -- 24@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 214 -- 220@LB@ |
50 |
0.004849 |
0.3217 |
b1079 |
flgH |
-12.97 |
0.070541 |
130 -- 141 |
23 -- 34 |
flagellar protein of basal-body outer-membrane L ring |
|
_____________129____________________142\n_____________|______________________|\n5'-ACU...CGAUC__A_____CA____________ACUCU...GGG-3'\n______________AG_UGCUG__AAAACUGACGCA\n______________||_|||||__||||||||||||\n______________UC_ACGAC__UUUUGACUGCGU\n3'-UUU...UUUUA________UA____________ACCCC...UAG-5'\n_____________|______________________|\n_____________35_____________________22\n |
135 -- 141 |
23 -- 29 |
-26.3449 kcal/mol |
4.56982 kcal/mol |
12.5314 kcal/mol |
129 142@LB@ | |@LB@5'-ACU...CGAUC A CA ACUCU...GGG-3'@LB@ AG UGCUG AAAACUGACGCA@LB@ || ||||| ||||||||||||@LB@ UC ACGAC UUUUGACUGCGU@LB@3'-UUU...UUUUA UA ACCCC...UAG-5'@LB@ | |@LB@ 35 22@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -26.3449 kcal/mol@LB@Unfolding Energy - mRNA 4.56982 kcal/mol@LB@Unfolding Energy - sRNA 12.5314 kcal/mol@LB@@LB@Position - mRNA 130 -- 141@LB@Position - sRNA 23 -- 34@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 23 -- 29@LB@ |
51 |
0.005002 |
0.3217 |
b0115 |
aceF |
-12.52 |
0.087110 |
146 -- 171 |
149 -- 173 |
pyruvate dehydrogenase dihydrolipoyltransacetylase component E2 |
|
_____________145______________________________________172\n_____________|________________________________________|\n5'-GAU...GCAAU_____________________C_______AUA________CCGCG...CGC-3'\n______________CGCCAA_AUUCA_____ACAU_GAUGCAG___AAGUUAAC\n______________|:||||_|:|||_____||||_|||||||___||||:|||\n______________GUGGUU_UGAGU_____UGUA_CUACGUC___UUCAGUUG\n3'-UUU...AAAAU______A_____CAGUG____________CG_________AAAGU...UAG-5'\n_____________|________________________________________|\n_____________174______________________________________148\n |
165 -- 171 |
149 -- 155 |
-31.6788 kcal/mol |
5.24034 kcal/mol |
12.6269 kcal/mol |
145 172@LB@ | |@LB@5'-GAU...GCAAU C AUA CCGCG...CGC-3'@LB@ CGCCAA AUUCA ACAU GAUGCAG AAGUUAAC@LB@ |:|||| |:||| |||| ||||||| ||||:|||@LB@ GUGGUU UGAGU UGUA CUACGUC UUCAGUUG@LB@3'-UUU...AAAAU A CAGUG CG AAAGU...UAG-5'@LB@ | |@LB@ 174 148@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -31.6788 kcal/mol@LB@Unfolding Energy - mRNA 5.24034 kcal/mol@LB@Unfolding Energy - sRNA 12.6269 kcal/mol@LB@@LB@Position - mRNA 146 -- 171@LB@Position - sRNA 149 -- 173@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 149 -- 155@LB@ |
52 |
0.005023 |
0.3217 |
b0403 |
malZ |
-9.64 |
0.320537 |
253 -- 286 |
155 -- 185 |
maltodextrin glucosidase |
|
_____________252___________________________287\n_____________|_____________________________|\n5'-UUU...UCAAC_____________U____C__A_______AGACC...AGC-3'\n______________UGCUCA_UUACAC_GUGG_UG_CGGGCGA\n______________|:||||_|:||||_:||:_||_|:|||:|\n______________AUGAGU_AGUGUG_UACU_AC_GUCCGUU\n3'-UUU...UGGUU______C______________________CAGUU...UAG-5'\n_____________|_____________________________|\n_____________186___________________________154\n |
280 -- 286 |
155 -- 161 |
-27.4446 kcal/mol |
6.9929 kcal/mol |
7.82707 kcal/mol |
252 287@LB@ | |@LB@5'-UUU...UCAAC U C A AGACC...AGC-3'@LB@ UGCUCA UUACAC GUGG UG CGGGCGA@LB@ |:|||| |:|||| :||: || |:|||:|@LB@ AUGAGU AGUGUG UACU AC GUCCGUU@LB@3'-UUU...UGGUU C CAGUU...UAG-5'@LB@ | |@LB@ 186 154@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -27.4446 kcal/mol@LB@Unfolding Energy - mRNA 6.9929 kcal/mol@LB@Unfolding Energy - sRNA 7.82707 kcal/mol@LB@@LB@Position - mRNA 253 -- 286@LB@Position - sRNA 155 -- 185@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 155 -- 161@LB@ |
53 |
0.005067 |
0.3217 |
b3666 |
uhpT |
-10.07 |
0.266829 |
134 -- 177 |
167 -- 215 |
hexose phosphate transporter |
|
_____________133_______________________________________________________178\n_____________|_________________________________________________________|\n5'-GCC...UGGAC____UCU____CC______________________UA________AUGCC_______GGUAU...UGG-3'\n______________GCUA___CAGG__UGAUUUGCU_GC___UGAUUUU____CAAUGC_____UCACGCA\n______________:|:|___||||__|:||:||||_||___|||||||____||||:|_____||||:||\n______________UGGU___GUCC__AUUAGACGA_CG___ACUAAAA____GUUAUG_____AGUGUGU\n____3'-UUUUUUU____C______AU_________C__CCC_______UGUG______AGUC________ACUAC...UAG-5'\n_____________|_________________________________________________________|\n_____________216_______________________________________________________166\n |
171 -- 177 |
167 -- 173 |
-37.7334 kcal/mol |
11.6521 kcal/mol |
18.4949 kcal/mol |
133 178@LB@ | |@LB@5'-GCC...UGGAC UCU CC UA AUGCC GGUAU...UGG-3'@LB@ GCUA CAGG UGAUUUGCU GC UGAUUUU CAAUGC UCACGCA@LB@ :|:| |||| |:||:|||| || ||||||| ||||:| ||||:||@LB@ UGGU GUCC AUUAGACGA CG ACUAAAA GUUAUG AGUGUGU@LB@ 3'-UUUUUUU C AU C CCC UGUG AGUC ACUAC...UAG-5'@LB@ | |@LB@ 216 166@LB@@LB@@LB@Energy -10.07 kcal/mol@LB@Hybridization Energy -37.7334 kcal/mol@LB@Unfolding Energy - mRNA 11.6521 kcal/mol@LB@Unfolding Energy - sRNA 18.4949 kcal/mol@LB@@LB@Position - mRNA 134 -- 177@LB@Position - sRNA 167 -- 215@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 167 -- 173@LB@ |
54 |
0.005402 |
0.3247 |
b3054 |
ygiF |
-14.97 |
0.027422 |
5 -- 80 |
111 -- 177 |
inorganic triphosphatase |
|
_____________4_______________________________________________________________________________81\n_____________|_______________________________________________________________________________|\n_______5'-GGCA_____GU___UAC_____AA___U______AUCAA_______CCUCUG___CA____U_G_______U___AA______CGCCC...CCG-3'\n______________UCAGU__CGC_____GCA__GCA__UCGAC_____UCGGAAU______UGU__GGUC_U_CCACUGC_UCA__CUUUUA\n______________|||||__|:|_____|||__|||__||:||_____||:||||______||:__||||_|_|||||||_|||__|:||:|\n______________AGUCA__GUG_____CGU__CGU__AGUUG_____AGUCUUA______ACG__CCAG_A_GGUGACG_AGU__GGAAGU\n3'-UUU...UUAUG_____GU___UACUA___C____UC_____AA_________________________U_G_______U___CA______UCGUA...UAG-5'\n_____________|_______________________________________________________________________________|\n_____________178_____________________________________________________________________________110\n |
62 -- 68 |
123 -- 129 |
-50.4846 kcal/mol |
15.6316 kcal/mol |
23.3828 kcal/mol |
4 81@LB@ | |@LB@ 5'-GGCA GU UAC AA U AUCAA CCUCUG CA U G U AA CGCCC...CCG-3'@LB@ UCAGU CGC GCA GCA UCGAC UCGGAAU UGU GGUC U CCACUGC UCA CUUUUA@LB@ ||||| |:| ||| ||| ||:|| ||:|||| ||: |||| | ||||||| ||| |:||:|@LB@ AGUCA GUG CGU CGU AGUUG AGUCUUA ACG CCAG A GGUGACG AGU GGAAGU@LB@3'-UUU...UUAUG GU UACUA C UC AA U G U CA UCGUA...UAG-5'@LB@ | |@LB@ 178 110@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -50.4846 kcal/mol@LB@Unfolding Energy - mRNA 15.6316 kcal/mol@LB@Unfolding Energy - sRNA 23.3828 kcal/mol@LB@@LB@Position - mRNA 5 -- 80@LB@Position - sRNA 111 -- 177@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 123 -- 129@LB@ |
55 |
0.005617 |
0.3247 |
b2829 |
ptsP |
-11.41 |
0.146041 |
68 -- 133 |
122 -- 174 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
______________68____________________________________________________________134\n______________|_____________________________________________________________|\n___________5'-_______UACACCAGA__U_____G_______AUG___AAGU_________C______G___GGUGG...UGG-3'\n______________CCAGCAG_________GU_UGA_C_GCUGGCG___GGU____UACUGGUAU_CGGUCA_ACA\n______________|||||||_________||_|:|_|_|||||||___|:|____:||:::||:_|:||||_|||\n______________GGUCGUC_________CA_AUU_G_CGACCGC___CUA____GUGGUUAUG_GUCAGU_UGU\n___3'-UUUUUUUU__________________U___A_A_______CCA___AAAU_________A______G___ACUAC...UAG-5'\n_____________|______________________________________________________________|\n_____________175____________________________________________________________121\n |
25 -- 31 |
197 -- 203 |
-46.8098 kcal/mol |
17.4414 kcal/mol |
18.4949 kcal/mol |
68 134@LB@ | |@LB@ 5'- UACACCAGA U G AUG AAGU C G GGUGG...UGG-3'@LB@ CCAGCAG GU UGA C GCUGGCG GGU UACUGGUAU CGGUCA ACA@LB@ ||||||| || |:| | ||||||| |:| :||:::||: |:|||| |||@LB@ GGUCGUC CA AUU G CGACCGC CUA GUGGUUAUG GUCAGU UGU@LB@ 3'-UUUUUUUU U A A CCA AAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 175 121@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -46.8098 kcal/mol@LB@Unfolding Energy - mRNA 17.4414 kcal/mol@LB@Unfolding Energy - sRNA 18.4949 kcal/mol@LB@@LB@Position - mRNA 68 -- 133@LB@Position - sRNA 122 -- 174@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 197 -- 203@LB@ |
56 |
0.005619 |
0.3247 |
b2781 |
mazG |
-9.54 |
0.334798 |
182 -- 193 |
141 -- 152 |
nucleoside triphosphate pyrophosphohydrolase |
|
_____________181__________194\n_____________|____________|\n5'-UGA...ACCCG____________CAAUU...CGC-3'\n______________CAAUUUUCAGGA\n______________|||:||||||:|\n______________GUUGAAAGUCUU\n3'-UUU...GUUCA____________AACGC...UAG-5'\n_____________|____________|\n_____________153__________140\n |
187 -- 193 |
141 -- 147 |
-13.182 kcal/mol |
1.77322 kcal/mol |
1.81388 kcal/mol |
181 194@LB@ | |@LB@5'-UGA...ACCCG CAAUU...CGC-3'@LB@ CAAUUUUCAGGA@LB@ |||:||||||:|@LB@ GUUGAAAGUCUU@LB@3'-UUU...GUUCA AACGC...UAG-5'@LB@ | |@LB@ 153 140@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -13.182 kcal/mol@LB@Unfolding Energy - mRNA 1.77322 kcal/mol@LB@Unfolding Energy - sRNA 1.81388 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 141 -- 152@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 141 -- 147@LB@ |
57 |
0.00565 |
0.3247 |
b2081 |
yegQ |
-17.30 |
0.009213 |
136 -- 160 |
1 -- 21 |
putative peptidase |
|
_____________135_______________________161\n_____________|_________________________|\n5'-AUU...AAGUG_______U_____AACC________AGGUG...GUU-3'\n______________GGGGCAC_CCCCU____GCUUCAUC\n______________|||||||_|||||____||||||||\n______________CCCCGUG_GGGGA____CGAAGUAG\n3'-UUU...GCGUA_____________A___________-5'\n_____________|________________________|\n_____________22_______________________1\n |
154 -- 160 |
1 -- 7 |
-36.7075 kcal/mol |
11.7869 kcal/mol |
10.2895 kcal/mol |
135 161@LB@ | |@LB@5'-AUU...AAGUG U AACC AGGUG...GUU-3'@LB@ GGGGCAC CCCCU GCUUCAUC@LB@ ||||||| ||||| ||||||||@LB@ CCCCGUG GGGGA CGAAGUAG@LB@3'-UUU...GCGUA A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -17.30 kcal/mol@LB@Hybridization Energy -36.7075 kcal/mol@LB@Unfolding Energy - mRNA 11.7869 kcal/mol@LB@Unfolding Energy - sRNA 10.2895 kcal/mol@LB@@LB@Position - mRNA 136 -- 160@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 1 -- 7@LB@ |
58 |
0.005664 |
0.3247 |
b1878 |
flhE |
-13.77 |
0.048330 |
266 -- 286 |
140 -- 162 |
proton seal during flagellar secretion |
|
_____________265_____________________287\n_____________|_______________________|\n5'-CGU...AUGUG__________AGUGUA_______UACGC...AUC-3'\n______________GCAGGCAAGU________GGAAU\n______________||||||||||________:||||\n______________CGUCCGUUCA________UCUUA\n3'-UUU...UACUA__________GUUGAAAG_____ACGCC...UAG-5'\n_____________|_______________________|\n_____________163_____________________139\n |
269 -- 275 |
153 -- 159 |
-20.7539 kcal/mol |
2.26514 kcal/mol |
7.696 kcal/mol |
265 287@LB@ | |@LB@5'-CGU...AUGUG AGUGUA UACGC...AUC-3'@LB@ GCAGGCAAGU GGAAU@LB@ |||||||||| :||||@LB@ CGUCCGUUCA UCUUA@LB@3'-UUU...UACUA GUUGAAAG ACGCC...UAG-5'@LB@ | |@LB@ 163 139@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.7539 kcal/mol@LB@Unfolding Energy - mRNA 2.26514 kcal/mol@LB@Unfolding Energy - sRNA 7.696 kcal/mol@LB@@LB@Position - mRNA 266 -- 286@LB@Position - sRNA 140 -- 162@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 153 -- 159@LB@ |
59 |
0.005693 |
0.3247 |
b1959 |
yedA |
-9.74 |
0.306961 |
258 -- 278 |
1 -- 22 |
amino acid exporter for phenylalanine threonine |
|
_____________257_______279\n_____________|_________|\n5'-UCA...UGAUA_________CAGGU...GCU-3'\n______________CUUGCUUCA\n______________|||||||||\n______________GAACGAAGU\n3'-UUU...UGGGG_________AG-5'\n_____________|_________|\n_____________23________0\n |
90 -- 96 |
3 -- 9 |
-13.1616 kcal/mol |
3.16944 kcal/mol |
1.03153 kcal/mol |
257 279@LB@ | |@LB@5'-UCA...UGAUA CAGGU...GCU-3'@LB@ CUUGCUUCA@LB@ |||||||||@LB@ GAACGAAGU@LB@3'-UUU...UGGGG AG-5'@LB@ | |@LB@ 23 0@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.1616 kcal/mol@LB@Unfolding Energy - mRNA 3.16944 kcal/mol@LB@Unfolding Energy - sRNA 1.03153 kcal/mol@LB@@LB@Position - mRNA 258 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 3 -- 9@LB@ |
60 |
0.005924 |
0.3261 |
b4201 |
priB |
-15.35 |
0.022961 |
159 -- 180 |
18 -- 40 |
primosomal protein N |
|
_____________158_____________181\n_____________|_______________|\n5'-AGG...GAAAC_______C_______ACGAU...AUC-3'\n______________UACCUUC__GCUUCA\n______________:|||::|__||||||\n______________GUGGGGG__CGAAGU\n3'-UUU...ACCCC_______AA______AG-5'\n_____________|_______________|\n_____________41______________17\n |
26 -- 32 |
11 -- 17 |
-15.0598 kcal/mol |
3.0465 kcal/mol |
7.09151 kcal/mol |
158 181@LB@ | |@LB@5'-AGG...GAAAC C ACGAU...AUC-3'@LB@ UACCUUC GCUUCA@LB@ :|||::| ||||||@LB@ GUGGGGG CGAAGU@LB@3'-UUU...ACCCC AA AG-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -15.35 kcal/mol@LB@Hybridization Energy -15.0598 kcal/mol@LB@Unfolding Energy - mRNA 3.0465 kcal/mol@LB@Unfolding Energy - sRNA 7.09151 kcal/mol@LB@@LB@Position - mRNA 159 -- 180@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 11 -- 17@LB@ |
61 |
0.006025 |
0.3261 |
b4330 |
yjiH |
-10.68 |
0.204041 |
214 -- 227 |
80 -- 92 |
nucleoside recognition pore and gate family putative inner membrane transporter |
|
_____________213______228\n_____________|________|\n5'-ACU...ACAAG________GUAGC...CCG-3'\n______________GGGAUGCU\n______________||||:|||\n______________CCCUGCGA\n3'-UUU...CAACA________AUUGG...UAG-5'\n_____________|________|\n_____________93_______79\n |
215 -- 221 |
85 -- 91 |
-14.2816 kcal/mol |
2.08889 kcal/mol |
5.76908 kcal/mol |
213 228@LB@ | |@LB@5'-ACU...ACAAG GUAGC...CCG-3'@LB@ GGGAUGCU@LB@ ||||:|||@LB@ CCCUGCGA@LB@3'-UUU...CAACA AUUGG...UAG-5'@LB@ | |@LB@ 93 79@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -14.2816 kcal/mol@LB@Unfolding Energy - mRNA 2.08889 kcal/mol@LB@Unfolding Energy - sRNA 5.76908 kcal/mol@LB@@LB@Position - mRNA 214 -- 227@LB@Position - sRNA 80 -- 92@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 85 -- 91@LB@ |
62 |
0.006126 |
0.3261 |
b3824 |
rhtB |
-10.68 |
0.204362 |
7 -- 23 |
171 -- 187 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________6_________________24\n_____________|_________________|\n_____5'-ACGCUG_______AAA_______GCGGU...ACC-3'\n______________ACGCCAG___UCAGUCA\n______________||:|||:___|||||||\n______________UGUGGUU___AGUCAGU\n3'-UUU...UAAAA_______AUG_______GUGUA...UAG-5'\n_____________|_________________|\n_____________188_______________170\n |
17 -- 23 |
171 -- 177 |
-18.1223 kcal/mol |
1.9449 kcal/mol |
4.7016 kcal/mol |
6 24@LB@ | |@LB@ 5'-ACGCUG AAA GCGGU...ACC-3'@LB@ ACGCCAG UCAGUCA@LB@ ||:|||: |||||||@LB@ UGUGGUU AGUCAGU@LB@3'-UUU...UAAAA AUG GUGUA...UAG-5'@LB@ | |@LB@ 188 170@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -18.1223 kcal/mol@LB@Unfolding Energy - mRNA 1.9449 kcal/mol@LB@Unfolding Energy - sRNA 4.7016 kcal/mol@LB@@LB@Position - mRNA 7 -- 23@LB@Position - sRNA 171 -- 187@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 171 -- 177@LB@ |
63 |
0.006154 |
0.3261 |
b3750 |
rbsC |
-15.65 |
0.019915 |
89 -- 120 |
139 -- 174 |
D-ribose ABC transporter permease |
|
_____________88___________________________________121\n_____________|____________________________________|\n5'-GAU...UCAUC___________A_______UC_____GG________UACUC...UCU-3'\n______________GUCAUGCAUGA___GGGCA__UCAGC____GGAAUU\n______________||||::|||||___:||||__|||:|____:|||||\n______________CAGUGUGUACU___UCCGU__AGUUG____UCUUAA\n3'-UUU...UGAGU___________ACG_____UC_____AAAG______CGCCA...UAG-5'\n_____________|____________________________________|\n_____________175__________________________________138\n |
91 -- 97 |
166 -- 172 |
-33.4294 kcal/mol |
9.19626 kcal/mol |
8.8011 kcal/mol |
88 121@LB@ | |@LB@5'-GAU...UCAUC A UC GG UACUC...UCU-3'@LB@ GUCAUGCAUGA GGGCA UCAGC GGAAUU@LB@ ||||::||||| :|||| |||:| :|||||@LB@ CAGUGUGUACU UCCGU AGUUG UCUUAA@LB@3'-UUU...UGAGU ACG UC AAAG CGCCA...UAG-5'@LB@ | |@LB@ 175 138@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -33.4294 kcal/mol@LB@Unfolding Energy - mRNA 9.19626 kcal/mol@LB@Unfolding Energy - sRNA 8.8011 kcal/mol@LB@@LB@Position - mRNA 89 -- 120@LB@Position - sRNA 139 -- 174@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 166 -- 172@LB@ |
64 |
0.006252 |
0.3261 |
b3195 |
mlaF |
-10.58 |
0.212925 |
52 -- 62 |
81 -- 91 |
ABC transporter maintaining OM lipid asymmetry ATP-binding protein |
|
_____________51____________________________________63\n_____________|_____________________________________|\n5'-UUU...UUCAA___UAA___GA______________AAAA__A_____AGACG...GAG-3'\n______________GGU___AUU__GCGCC_AUGCUUAG____UC_ACGCA\n______________|||___|||__:|:||_||:||:||____||_||:||\n______________CCA___UAA__UGUGG_UAUGAGUC____AG_UGUGU\n3'-UUU...ACCGC___C_____AA_____U____________________ACUAC...UAG-5'\n_____________|_____________________________________|\n_____________92____________________________________80\n |
166 -- 172 |
174 -- 180 |
-23.2269 kcal/mol |
9.4943 kcal/mol |
5.22711 kcal/mol |
51 63@LB@ | |@LB@5'-UUU...UUCAA UAA GA AAAA A AGACG...GAG-3'@LB@ GGU AUU GCGCC AUGCUUAG UC ACGCA@LB@ ||| ||| :|:|| ||:||:|| || ||:||@LB@ CCA UAA UGUGG UAUGAGUC AG UGUGU@LB@3'-UUU...ACCGC C AA U ACUAC...UAG-5'@LB@ | |@LB@ 92 80@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -23.2269 kcal/mol@LB@Unfolding Energy - mRNA 9.4943 kcal/mol@LB@Unfolding Energy - sRNA 5.22711 kcal/mol@LB@@LB@Position - mRNA 52 -- 62@LB@Position - sRNA 81 -- 91@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 174 -- 180@LB@ |
65 |
0.006332 |
0.3261 |
b3857 |
mobA |
-11.59 |
0.134663 |
143 -- 181 |
126 -- 173 |
molybdopterin-guanine dinucleotide synthase |
|
_____________142________________________________________________________182\n_____________|__________________________________________________________|\n5'-UCC...AUAGU_______C_____U_U___GA___A__C______AG______________A_______AAUAA...AAC-3'\n______________GAUGCUC__UUAC_C_UGA__CAG_CA_GUUAGC____________GGUC_AUCCCAC\n______________:||:|||__|:||_|_|||__|||_||_||:|:|____________||||_|||||||\n______________UUAUGAG__AGUG_G_ACU__GUC_GU_CAGUUG____________CCAG_UAGGGUG\n3'-UUU...UGUGG_______UC____U_U___AC___C__U______AAAGUCUUAACG____________ACGUA...UAG-5'\n_____________|__________________________________________________________|\n_____________174________________________________________________________125\n |
175 -- 181 |
126 -- 132 |
-38.7055 kcal/mol |
10.57 kcal/mol |
15.6637 kcal/mol |
142 182@LB@ | |@LB@5'-UCC...AUAGU C U U GA A C AG A AAUAA...AAC-3'@LB@ GAUGCUC UUAC C UGA CAG CA GUUAGC GGUC AUCCCAC@LB@ :||:||| |:|| | ||| ||| || ||:|:| |||| |||||||@LB@ UUAUGAG AGUG G ACU GUC GU CAGUUG CCAG UAGGGUG@LB@3'-UUU...UGUGG UC U U AC C U AAAGUCUUAACG ACGUA...UAG-5'@LB@ | |@LB@ 174 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -38.7055 kcal/mol@LB@Unfolding Energy - mRNA 10.57 kcal/mol@LB@Unfolding Energy - sRNA 15.6637 kcal/mol@LB@@LB@Position - mRNA 143 -- 181@LB@Position - sRNA 126 -- 173@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 126 -- 132@LB@ |
66 |
0.006473 |
0.3261 |
b0712 |
ybgK |
-17.58 |
0.008094 |
217 -- 255 |
130 -- 164 |
putative allophanate hydrolase subunit 2 |
|
_____________216________________________________________________________256\n_____________|__________________________________________________________|\n5'-CGC...GGAGU_____GA__A____U_____________U__AUACC___GUG______G_________ACGGU...AUA-3'\n______________AUGCU__AG_UUAU_C___GUGCGGGCA_GU_____ACU___CAGGAU_GCGGUCGUC\n______________||:||__||_|:|:_|___:|||:||||_||_____|||___|||:||_||||||:||\n______________UAUGA__UC_AGUG_G___UACGUCCGU_CA_____UGA___GUCUUA_CGCCAGUAG\n3'-UUU...GUGGU_____G________U_UAC_________U__GU______AA_______A_________GGUGA...UAG-5'\n_____________|__________________________________________________________|\n_____________165________________________________________________________129\n |
249 -- 255 |
130 -- 136 |
-44.2735 kcal/mol |
15.0195 kcal/mol |
15.1988 kcal/mol |
216 256@LB@ | |@LB@5'-CGC...GGAGU GA A U U AUACC GUG G ACGGU...AUA-3'@LB@ AUGCU AG UUAU C GUGCGGGCA GU ACU CAGGAU GCGGUCGUC@LB@ ||:|| || |:|: | :|||:|||| || ||| |||:|| ||||||:||@LB@ UAUGA UC AGUG G UACGUCCGU CA UGA GUCUUA CGCCAGUAG@LB@3'-UUU...GUGGU G U UAC U GU AA A GGUGA...UAG-5'@LB@ | |@LB@ 165 129@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -44.2735 kcal/mol@LB@Unfolding Energy - mRNA 15.0195 kcal/mol@LB@Unfolding Energy - sRNA 15.1988 kcal/mol@LB@@LB@Position - mRNA 217 -- 255@LB@Position - sRNA 130 -- 164@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 130 -- 136@LB@ |
67 |
0.006568 |
0.3261 |
b1927 |
amyA |
-8.95 |
0.423898 |
77 -- 95 |
58 -- 76 |
cytoplasmic alpha-amylase |
|
_____________76_____________________96\n_____________|______________________|\n5'-UUA...GAAAC__G_______GU___C______AAAAU...AUA-3'\n______________UG_UCGGUCA__CAU_GGUGCA\n______________|:_||:||||__|||_|:||||\n______________AU_AGUCAGU__GUA_CUACGU\n3'-UUU...UGGUU__G_______GU__________CCGUU...UAG-5'\n_____________|______________________|\n_____________77_____________________57\n |
35 -- 41 |
171 -- 177 |
-21.7732 kcal/mol |
10.1812 kcal/mol |
4.80336 kcal/mol |
76 96@LB@ | |@LB@5'-UUA...GAAAC G GU C AAAAU...AUA-3'@LB@ UG UCGGUCA CAU GGUGCA@LB@ |: ||:|||| ||| |:||||@LB@ AU AGUCAGU GUA CUACGU@LB@3'-UUU...UGGUU G GU CCGUU...UAG-5'@LB@ | |@LB@ 77 57@LB@@LB@@LB@Energy -8.95 kcal/mol@LB@Hybridization Energy -21.7732 kcal/mol@LB@Unfolding Energy - mRNA 10.1812 kcal/mol@LB@Unfolding Energy - sRNA 4.80336 kcal/mol@LB@@LB@Position - mRNA 77 -- 95@LB@Position - sRNA 58 -- 76@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 171 -- 177@LB@ |
68 |
0.00659 |
0.3261 |
b4080 |
mdtP |
-14.15 |
0.040423 |
195 -- 221 |
144 -- 172 |
outer membrane factor of efflux pump |
|
_____________194_______________________________222\n_____________|_________________________________|\n5'-CUG...CAAGG__C_____A________AUC_____________CGUCU...CUC-3'\n______________AG_CACGC_AUGAU_CA_____GUCAACUUUCA\n______________||_|||:|_|||||_||_____|||||||||||\n______________UC_GUGUG_UACUA_GU_____CAGUUGAAAGU\n3'-UUU...AUGAG__A___________C__CCGUU___________CUUAA...UAG-5'\n_____________|_________________________________|\n_____________173_______________________________143\n |
215 -- 221 |
144 -- 150 |
-24.8993 kcal/mol |
3.71866 kcal/mol |
8.07675 kcal/mol |
194 222@LB@ | |@LB@5'-CUG...CAAGG C A AUC CGUCU...CUC-3'@LB@ AG CACGC AUGAU CA GUCAACUUUCA@LB@ || |||:| ||||| || |||||||||||@LB@ UC GUGUG UACUA GU CAGUUGAAAGU@LB@3'-UUU...AUGAG A C CCGUU CUUAA...UAG-5'@LB@ | |@LB@ 173 143@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -24.8993 kcal/mol@LB@Unfolding Energy - mRNA 3.71866 kcal/mol@LB@Unfolding Energy - sRNA 8.07675 kcal/mol@LB@@LB@Position - mRNA 195 -- 221@LB@Position - sRNA 144 -- 172@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 144 -- 150@LB@ |
69 |
0.006739 |
0.3286 |
b2265 |
menF |
-9.03 |
0.410924 |
65 -- 108 |
52 -- 101 |
isochorismate synthase 2 |
|
_____________64__________109\n_____________|___________|\n5'-ACU...CGGGU___________CUUUC...CUC-3'\n______________UAUCGAUAUUC\n______________:|:|:|||:||\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________102_________51\n |
285 -- 291 |
176 -- 182 |
-9.38108 kcal/mol |
0.14396 kcal/mol |
3.38772 kcal/mol |
64 109@LB@ | |@LB@5'-ACU...CGGGU CUUUC...CUC-3'@LB@ UAUCGAUAUUC@LB@ :|:|:|||:||@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 102 51@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -9.38108 kcal/mol@LB@Unfolding Energy - mRNA 0.14396 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 65 -- 108@LB@Position - sRNA 52 -- 101@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 176 -- 182@LB@ |
70 |
0.00686 |
0.3298 |
b0761 |
modE |
-10.05 |
0.269682 |
248 -- 271 |
57 -- 77 |
transcriptional repressor for the molybdenum transport operon modABC |
|
_____________247______272\n_____________|________|\n5'-ACC...GAAAA________CUUUU...CCA-3'\n______________GCACUCCC\n______________||||:|||\n______________CGUGGGGG\n3'-UUU...UACCC________AACGA...UAG-5'\n_____________|________|\n_____________78_______56\n |
126 -- 132 |
11 -- 17 |
-14.7879 kcal/mol |
0.633098 kcal/mol |
5.13224 kcal/mol |
247 272@LB@ | |@LB@5'-ACC...GAAAA CUUUU...CCA-3'@LB@ GCACUCCC@LB@ ||||:|||@LB@ CGUGGGGG@LB@3'-UUU...UACCC AACGA...UAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -14.7879 kcal/mol@LB@Unfolding Energy - mRNA 0.633098 kcal/mol@LB@Unfolding Energy - sRNA 5.13224 kcal/mol@LB@@LB@Position - mRNA 248 -- 271@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 11 -- 17@LB@ |
71 |
0.00726 |
0.3408 |
b2944 |
yggI |
-9.32 |
0.365111 |
156 -- 174 |
1 -- 18 |
Zn-dependent metalloprotease-related protein |
|
_____________155_____________175\n_____________|_______________|\n5'-GAA...AGCCA________AG_____UUUUC...ACC-3'\n______________CCUCUUGC__UCAUC\n______________||:|||||__|||||\n______________GGGGAACG__AGUAG\n3'-UUU...CCGUG________A______-5'\n_____________|______________|\n_____________19_____________1\n |
161 -- 167 |
7 -- 13 |
-18.0684 kcal/mol |
1.30619 kcal/mol |
6.71812 kcal/mol |
155 175@LB@ | |@LB@5'-GAA...AGCCA AG UUUUC...ACC-3'@LB@ CCUCUUGC UCAUC@LB@ ||:||||| |||||@LB@ GGGGAACG AGUAG@LB@3'-UUU...CCGUG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -18.0684 kcal/mol@LB@Unfolding Energy - mRNA 1.30619 kcal/mol@LB@Unfolding Energy - sRNA 6.71812 kcal/mol@LB@@LB@Position - mRNA 156 -- 174@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 7 -- 13@LB@ |
72 |
0.007293 |
0.3408 |
b3240 |
aaeB |
-15.57 |
0.020683 |
172 -- 248 |
45 -- 133 |
p-hydroxybenzoic acid efflux system component |
|
_____________171________________249\n_____________|__________________|\n5'-ACU...ACAUA__________________CUGGC...UGG-3'\n______________UUCGCU_UUGCGGUAAAA\n______________||||||_|:|||||||||\n______________AAGCGA_AGCGCCAUUUU\n3'-UUU...UGUUG______C___________AUCAC...UAG-5'\n_____________|__________________|\n_____________134________________44\n |
240 -- 246 |
47 -- 53 |
-22.573 kcal/mol |
5.7072 kcal/mol |
6.14031 kcal/mol |
171 249@LB@ | |@LB@5'-ACU...ACAUA CUGGC...UGG-3'@LB@ UUCGCU UUGCGGUAAAA@LB@ |||||| |:|||||||||@LB@ AAGCGA AGCGCCAUUUU@LB@3'-UUU...UGUUG C AUCAC...UAG-5'@LB@ | |@LB@ 134 44@LB@@LB@@LB@Energy -15.57 kcal/mol@LB@Hybridization Energy -22.573 kcal/mol@LB@Unfolding Energy - mRNA 5.7072 kcal/mol@LB@Unfolding Energy - sRNA 6.14031 kcal/mol@LB@@LB@Position - mRNA 172 -- 248@LB@Position - sRNA 45 -- 133@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 47 -- 53@LB@ |
73 |
0.007584 |
0.3458 |
b0059 |
rapA |
-13.35 |
0.058963 |
263 -- 277 |
46 -- 60 |
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase |
|
_____________262_____________278\n_____________|_______________|\n5'-GCU...GGAAC_______________UGCGC...UUU-3'\n______________CGUUGUCGCGGUGGA\n______________||:|||||||||::|\n______________GCGACAGCGCCAUUU\n3'-UUU...UUGAA_______________UAUCA...UAG-5'\n_____________|_______________|\n_____________61______________45\n |
269 -- 275 |
48 -- 54 |
-26.0749 kcal/mol |
7.19742 kcal/mol |
6.07408 kcal/mol |
262 278@LB@ | |@LB@5'-GCU...GGAAC UGCGC...UUU-3'@LB@ CGUUGUCGCGGUGGA@LB@ ||:|||||||||::|@LB@ GCGACAGCGCCAUUU@LB@3'-UUU...UUGAA UAUCA...UAG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -26.0749 kcal/mol@LB@Unfolding Energy - mRNA 7.19742 kcal/mol@LB@Unfolding Energy - sRNA 6.07408 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 48 -- 54@LB@ |
74 |
0.007724 |
0.3458 |
b1261 |
trpB |
-16.40 |
0.014006 |
36 -- 47 |
195 -- 206 |
tryptophan synthase beta subunit |
|
_____________35___________48\n_____________|____________|\n5'-UGG...AACGU____________GGGCU...UCA-3'\n______________UCUGCUGGCGGG\n______________||||||||||||\n______________AGACGACCGCCC\n3'-UUU...AUAUU____________ACUAA...UAG-5'\n_____________|____________|\n_____________207__________194\n |
41 -- 47 |
195 -- 201 |
-26.9412 kcal/mol |
6.0368 kcal/mol |
9.05854 kcal/mol |
35 48@LB@ | |@LB@5'-UGG...AACGU GGGCU...UCA-3'@LB@ UCUGCUGGCGGG@LB@ ||||||||||||@LB@ AGACGACCGCCC@LB@3'-UUU...AUAUU ACUAA...UAG-5'@LB@ | |@LB@ 207 194@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -26.9412 kcal/mol@LB@Unfolding Energy - mRNA 6.0368 kcal/mol@LB@Unfolding Energy - sRNA 9.05854 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 195 -- 206@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 195 -- 201@LB@ |
75 |
0.007778 |
0.3458 |
b0766 |
ybhA |
-9.49 |
0.341100 |
208 -- 245 |
124 -- 172 |
pyridoxal phosphate (PLP) phosphatase |
|
_____________207___________________________246\n_____________|_____________________________|\n5'-GAA...UGGAA_______UG________________U___UCUCG...GCG-3'\n______________UACGCCA__AC_CA__CACGCGUGA_UGC\n______________|||:|||__||_||__|||:|:|||_|||\n______________AUGUGGU__UG_GU__GUGUGUACU_ACG\n3'-UUU...CUAAA_______UA__A__CA_____________UCCGU...UAG-5'\n_____________|_____________________________|\n_____________173___________________________123\n |
195 -- 201 |
182 -- 188 |
-28.0817 kcal/mol |
7.23992 kcal/mol |
7.72227 kcal/mol |
207 246@LB@ | |@LB@5'-GAA...UGGAA UG U UCUCG...GCG-3'@LB@ UACGCCA AC CA CACGCGUGA UGC@LB@ |||:||| || || |||:|:||| |||@LB@ AUGUGGU UG GU GUGUGUACU ACG@LB@3'-UUU...CUAAA UA A CA UCCGU...UAG-5'@LB@ | |@LB@ 173 123@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -28.0817 kcal/mol@LB@Unfolding Energy - mRNA 7.23992 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 208 -- 245@LB@Position - sRNA 124 -- 172@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 182 -- 188@LB@ |
76 |
0.007832 |
0.3458 |
b1054 |
lpxL |
-10.56 |
0.214918 |
224 -- 240 |
1 -- 17 |
lauryl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________223_______241\n_____________|_________|\n5'-AAA...CGCAC_________CGCGU...CCU-3'\n______________UGCUUCAUC\n______________|||||||||\n______________ACGAAGUAG\n3'-UUU...GGGGA_________-5'\n_____________|________|\n_____________18_______1\n |
234 -- 240 |
1 -- 7 |
-13.5925 kcal/mol |
1.26369 kcal/mol |
0.710349 kcal/mol |
223 241@LB@ | |@LB@5'-AAA...CGCAC CGCGU...CCU-3'@LB@ UGCUUCAUC@LB@ |||||||||@LB@ ACGAAGUAG@LB@3'-UUU...GGGGA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -13.5925 kcal/mol@LB@Unfolding Energy - mRNA 1.26369 kcal/mol@LB@Unfolding Energy - sRNA 0.710349 kcal/mol@LB@@LB@Position - mRNA 224 -- 240@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
77 |
0.007981 |
0.3458 |
b1738 |
chbB |
-9.80 |
0.299184 |
58 -- 71 |
174 -- 187 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________57_______________________________72\n_____________|________________________________|\n5'-AAU...UAUAA___CAAAGAA______U_______G__U____CGUAU...CGG-3'\n______________GGU_______AUACUA_UGCUCAG_UC_AUAC\n______________|||_______|:||:|_|:|||||_||_|:||\n______________CCA_______UGUGGU_AUGAGUC_AG_UGUG\n3'-UUU...ACCGC___CUAAAA_______U_______________UACUA...UAG-5'\n_____________|________________________________|\n_____________188______________________________173\n |
65 -- 71 |
174 -- 180 |
-20.4225 kcal/mol |
4.13376 kcal/mol |
5.03959 kcal/mol |
57 72@LB@ | |@LB@5'-AAU...UAUAA CAAAGAA U G U CGUAU...CGG-3'@LB@ GGU AUACUA UGCUCAG UC AUAC@LB@ ||| |:||:| |:||||| || |:||@LB@ CCA UGUGGU AUGAGUC AG UGUG@LB@3'-UUU...ACCGC CUAAAA U UACUA...UAG-5'@LB@ | |@LB@ 188 173@LB@@LB@@LB@Energy -9.80 kcal/mol@LB@Hybridization Energy -20.4225 kcal/mol@LB@Unfolding Energy - mRNA 4.13376 kcal/mol@LB@Unfolding Energy - sRNA 5.03959 kcal/mol@LB@@LB@Position - mRNA 58 -- 71@LB@Position - sRNA 174 -- 187@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 174 -- 180@LB@ |
78 |
0.008099 |
0.3458 |
b2810 |
csdA |
-12.29 |
0.097398 |
132 -- 155 |
3 -- 23 |
cysteine sulfinate desulfinase |
|
_____________131_______________156\n_____________|_________________|\n5'-CUU...GGUUA____U________A___AAGUG...AAG-3'\n______________GCAC_CUCCUUGU_UCA\n______________||||_|:|||||:_|||\n______________CGUG_GGGGAACG_AGU\n3'-UUU...UACCC_____________A___AG-5'\n_____________|_________________|\n_____________24________________2\n |
145 -- 151 |
7 -- 13 |
-20.4088 kcal/mol |
3.04417 kcal/mol |
7.17675 kcal/mol |
131 156@LB@ | |@LB@5'-CUU...GGUUA U A AAGUG...AAG-3'@LB@ GCAC CUCCUUGU UCA@LB@ |||| |:|||||: |||@LB@ CGUG GGGGAACG AGU@LB@3'-UUU...UACCC A AG-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -20.4088 kcal/mol@LB@Unfolding Energy - mRNA 3.04417 kcal/mol@LB@Unfolding Energy - sRNA 7.17675 kcal/mol@LB@@LB@Position - mRNA 132 -- 155@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 7 -- 13@LB@ |
79 |
0.008119 |
0.3458 |
b0945 |
pyrD |
-11.48 |
0.141710 |
30 -- 41 |
191 -- 202 |
dihydro-orotate oxidase FMN-linked |
|
_____________29______________________42\n_____________|_______________________|\n5'-UGU...AGCAA_____________A___GA____CGU-3'\n______________UUACGCCG_UAUU_CAG__ACGC\n______________||||:||:_||:|_|||__||:|\n______________AAUGUGGU_AUGA_GUC__UGUG\n3'-UUU...ACUAA________U________AG____UACUA...UAG-5'\n_____________|_______________________|\n_____________203_____________________190\n |
277 -- 283 |
182 -- 188 |
-20.4941 kcal/mol |
3.55802 kcal/mol |
4.91485 kcal/mol |
29 42@LB@ | |@LB@5'-UGU...AGCAA A GA CGU-3'@LB@ UUACGCCG UAUU CAG ACGC@LB@ ||||:||: ||:| ||| ||:|@LB@ AAUGUGGU AUGA GUC UGUG@LB@3'-UUU...ACUAA U AG UACUA...UAG-5'@LB@ | |@LB@ 203 190@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.4941 kcal/mol@LB@Unfolding Energy - mRNA 3.55802 kcal/mol@LB@Unfolding Energy - sRNA 4.91485 kcal/mol@LB@@LB@Position - mRNA 30 -- 41@LB@Position - sRNA 191 -- 202@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 182 -- 188@LB@ |
80 |
0.008443 |
0.3551 |
b3791 |
wecE |
-14.19 |
0.039608 |
22 -- 66 |
14 -- 64 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
_____________21______________67\n_____________|_______________|\n5'-GAC...ACCGC_______________GGUGA...CCC-3'\n______________GUACU_GGUUAUACA\n______________:||||_:||:|:|||\n______________UAUGA_UCAGUGUGU\n3'-UUU...GUGGU_____G_________ACUAC...UAG-5'\n_____________|_______________|\n_____________65______________13\n |
185 -- 191 |
167 -- 173 |
-12.5686 kcal/mol |
2.73267 kcal/mol |
0.435744 kcal/mol |
21 67@LB@ | |@LB@5'-GAC...ACCGC GGUGA...CCC-3'@LB@ GUACU GGUUAUACA@LB@ :|||| :||:|:|||@LB@ UAUGA UCAGUGUGU@LB@3'-UUU...GUGGU G ACUAC...UAG-5'@LB@ | |@LB@ 65 13@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -12.5686 kcal/mol@LB@Unfolding Energy - mRNA 2.73267 kcal/mol@LB@Unfolding Energy - sRNA 0.435744 kcal/mol@LB@@LB@Position - mRNA 22 -- 66@LB@Position - sRNA 14 -- 64@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 167 -- 173@LB@ |
81 |
0.008673 |
0.3575 |
b1683 |
sufB |
-9.84 |
0.294156 |
211 -- 257 |
124 -- 171 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________210_______________258\n_____________|_________________|\n5'-GUU...AAUCA________AAUU_____ACCCU...AGC-3'\n______________GAUAUUCA____UCACA\n______________:|||:|||____|||||\n______________UUAUGAGU____AGUGU\n3'-UUU...UGUGG________C________GUACU...UAG-5'\n_____________|_________________|\n_____________172_______________123\n |
127 -- 133 |
175 -- 181 |
-8.93573 kcal/mol |
1.46068 kcal/mol |
0.409577 kcal/mol |
210 258@LB@ | |@LB@5'-GUU...AAUCA AAUU ACCCU...AGC-3'@LB@ GAUAUUCA UCACA@LB@ :|||:||| |||||@LB@ UUAUGAGU AGUGU@LB@3'-UUU...UGUGG C GUACU...UAG-5'@LB@ | |@LB@ 172 123@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -8.93573 kcal/mol@LB@Unfolding Energy - mRNA 1.46068 kcal/mol@LB@Unfolding Energy - sRNA 0.409577 kcal/mol@LB@@LB@Position - mRNA 211 -- 257@LB@Position - sRNA 124 -- 171@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 175 -- 181@LB@ |
82 |
0.008839 |
0.3575 |
b3680 |
yidL |
-8.33 |
0.532337 |
91 -- 113 |
142 -- 164 |
AraC family putative transcriptional regulator |
|
_____________90________________114\n_____________|_________________|\n5'-AAC...UGCGU________GCAG_____UUCUU...UGA-3'\n______________CGGGUCAG____UCAGA\n______________|::||||:____|||||\n______________GUUCAGUU____AGUCU\n3'-UUU...CGUCC________GAA______UAACG...UAG-5'\n_____________|_________________|\n_____________165_______________141\n |
97 -- 103 |
151 -- 157 |
-14.3717 kcal/mol |
4.36777 kcal/mol |
4.37859 kcal/mol |
90 114@LB@ | |@LB@5'-AAC...UGCGU GCAG UUCUU...UGA-3'@LB@ CGGGUCAG UCAGA@LB@ |::||||: |||||@LB@ GUUCAGUU AGUCU@LB@3'-UUU...CGUCC GAA UAACG...UAG-5'@LB@ | |@LB@ 165 141@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -14.3717 kcal/mol@LB@Unfolding Energy - mRNA 4.36777 kcal/mol@LB@Unfolding Energy - sRNA 4.37859 kcal/mol@LB@@LB@Position - mRNA 91 -- 113@LB@Position - sRNA 142 -- 164@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 151 -- 157@LB@ |
83 |
0.008941 |
0.3575 |
b3343 |
tusB |
-13.46 |
0.055944 |
1 -- 14 |
190 -- 203 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
______________1_____________15\n______________|_____________|\n___________5'-_______C______ACAUU...GCG-3'\n______________GCUGGCG_GUGAUU\n______________|||||||_||||||\n______________CGACCGC_CACUAA\n3'-UUU...UUAGA_______C______AAUGU...UAG-5'\n_____________|______________|\n_____________204____________189\n |
1 -- 7 |
197 -- 203 |
-22.3351 kcal/mol |
4.22102 kcal/mol |
9.06745 kcal/mol |
1 15@LB@ | |@LB@ 5'- C ACAUU...GCG-3'@LB@ GCUGGCG GUGAUU@LB@ ||||||| ||||||@LB@ CGACCGC CACUAA@LB@3'-UUU...UUAGA C AAUGU...UAG-5'@LB@ | |@LB@ 204 189@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -22.3351 kcal/mol@LB@Unfolding Energy - mRNA 4.22102 kcal/mol@LB@Unfolding Energy - sRNA 9.06745 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 190 -- 203@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 197 -- 203@LB@ |
84 |
0.009006 |
0.3575 |
b1924 |
fliD |
-8.51 |
0.498321 |
24 -- 43 |
139 -- 158 |
flagellar filament capping protein |
|
_____________23_____________44\n_____________|______________|\n5'-CGU...UAAAA____C_________UUUUU...UUU-3'\n______________CAAC_UUUAGAAUU\n______________||||_||:||||||\n______________GUUG_AAGUCUUAA\n3'-UUU...GUUCA____A_________CGCCA...UAG-5'\n_____________|______________|\n_____________159____________138\n |
37 -- 43 |
139 -- 145 |
-11.0468 kcal/mol |
1.39956 kcal/mol |
1.83266 kcal/mol |
23 44@LB@ | |@LB@5'-CGU...UAAAA C UUUUU...UUU-3'@LB@ CAAC UUUAGAAUU@LB@ |||| ||:||||||@LB@ GUUG AAGUCUUAA@LB@3'-UUU...GUUCA A CGCCA...UAG-5'@LB@ | |@LB@ 159 138@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -11.0468 kcal/mol@LB@Unfolding Energy - mRNA 1.39956 kcal/mol@LB@Unfolding Energy - sRNA 1.83266 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 139 -- 158@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 139 -- 145@LB@ |
85 |
0.009065 |
0.3575 |
b3155 |
yhbQ |
-10.34 |
0.236900 |
54 -- 88 |
123 -- 160 |
GIY-YIG nuclease superfamily protein |
|
_____________53______________________89\n_____________|_______________________|\n5'-UUU...GAUCC_____G__GACAAUAA_______ACCGG...GCG-3'\n______________GUACC_CC________GCUUUAU\n______________|:|||_||________||||:||\n______________CGUGG_GG________CGAAGUA\n3'-UUU...UACCC_____G__AA_____________G-5'\n_____________|_______________________|\n_____________161_____________________122\n |
245 -- 251 |
2 -- 8 |
-16.2438 kcal/mol |
1.2562 kcal/mol |
7.2187 kcal/mol |
53 89@LB@ | |@LB@5'-UUU...GAUCC G GACAAUAA ACCGG...GCG-3'@LB@ GUACC CC GCUUUAU@LB@ |:||| || ||||:||@LB@ CGUGG GG CGAAGUA@LB@3'-UUU...UACCC G AA G-5'@LB@ | |@LB@ 161 122@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -16.2438 kcal/mol@LB@Unfolding Energy - mRNA 1.2562 kcal/mol@LB@Unfolding Energy - sRNA 7.2187 kcal/mol@LB@@LB@Position - mRNA 54 -- 88@LB@Position - sRNA 123 -- 160@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 2 -- 8@LB@ |
86 |
0.009326 |
0.3575 |
b0899 |
ycaM |
-11.50 |
0.140486 |
23 -- 68 |
127 -- 173 |
putative transporter |
|
_____________22_______________________________________________________69\n_____________|________________________________________________________|\n5'-AGC...GAACU____GUU______UC_____UUUUUU___UCUU__A__U__C____U_________AAUUU...AUG-3'\n______________UACU___UCACAC____UGC______GUU____CU_UC_GA_UUGC__UUAUUCCA\n______________||||___||||||____|||______||:____||_||_||_||||__|:||:|||\n______________AUGA___AGUGUG____ACG______CAG____GA_AG_CU_AACG__AGUAGGGU\n3'-UUU...UGGUU____GUC______UACU___UCCGUU___UU____A__U__U____CC________GACGU...UAG-5'\n_____________|________________________________________________________|\n_____________174______________________________________________________126\n |
62 -- 68 |
127 -- 133 |
-29.7478 kcal/mol |
2.56458 kcal/mol |
15.6497 kcal/mol |
22 69@LB@ | |@LB@5'-AGC...GAACU GUU UC UUUUUU UCUU A U C U AAUUU...AUG-3'@LB@ UACU UCACAC UGC GUU CU UC GA UUGC UUAUUCCA@LB@ |||| |||||| ||| ||: || || || |||| |:||:|||@LB@ AUGA AGUGUG ACG CAG GA AG CU AACG AGUAGGGU@LB@3'-UUU...UGGUU GUC UACU UCCGUU UU A U U CC GACGU...UAG-5'@LB@ | |@LB@ 174 126@LB@@LB@@LB@Energy -11.50 kcal/mol@LB@Hybridization Energy -29.7478 kcal/mol@LB@Unfolding Energy - mRNA 2.56458 kcal/mol@LB@Unfolding Energy - sRNA 15.6497 kcal/mol@LB@@LB@Position - mRNA 23 -- 68@LB@Position - sRNA 127 -- 173@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 127 -- 133@LB@ |
87 |
0.009479 |
0.3575 |
b1192 |
ldcA |
-9.25 |
0.375459 |
184 -- 216 |
125 -- 154 |
murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A |
|
_____________183_______________217\n_____________|_________________|\n5'-UGC...AGCAC__CG_____________UCCAG...UCA-3'\n______________GC__CGCUG_CGUGGUA\n______________:|__|||||_||:||||\n______________UG__GCGAC_GCGCCAU\n3'-UUU...CGUGU__AA_____A_______UUUAU...UAG-5'\n_____________|_________________|\n_____________155_______________124\n |
261 -- 267 |
48 -- 54 |
-20.6657 kcal/mol |
8.36057 kcal/mol |
6.14531 kcal/mol |
183 217@LB@ | |@LB@5'-UGC...AGCAC CG UCCAG...UCA-3'@LB@ GC CGCUG CGUGGUA@LB@ :| ||||| ||:||||@LB@ UG GCGAC GCGCCAU@LB@3'-UUU...CGUGU AA A UUUAU...UAG-5'@LB@ | |@LB@ 155 124@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -20.6657 kcal/mol@LB@Unfolding Energy - mRNA 8.36057 kcal/mol@LB@Unfolding Energy - sRNA 6.14531 kcal/mol@LB@@LB@Position - mRNA 184 -- 216@LB@Position - sRNA 125 -- 154@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 48 -- 54@LB@ |
88 |
0.009956 |
0.3575 |
b2672 |
ygaM |
-12.38 |
0.093122 |
193 -- 231 |
56 -- 92 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________192______232\n_____________|________|\n5'-AAC...UGAAC________AGAAA...AGU-3'\n______________CUCAGUUA\n______________||||||:|\n______________GAGUCAGU\n3'-UUU...GUUAU________GUGUA...UAG-5'\n_____________|________|\n_____________93_______55\n |
142 -- 148 |
171 -- 177 |
-10.1878 kcal/mol |
1.87036 kcal/mol |
0.207782 kcal/mol |
192 232@LB@ | |@LB@5'-AAC...UGAAC AGAAA...AGU-3'@LB@ CUCAGUUA@LB@ ||||||:|@LB@ GAGUCAGU@LB@3'-UUU...GUUAU GUGUA...UAG-5'@LB@ | |@LB@ 93 55@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -10.1878 kcal/mol@LB@Unfolding Energy - mRNA 1.87036 kcal/mol@LB@Unfolding Energy - sRNA 0.207782 kcal/mol@LB@@LB@Position - mRNA 193 -- 231@LB@Position - sRNA 56 -- 92@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 171 -- 177@LB@ |
89 |
0.009985 |
0.3575 |
b0477 |
gsk |
-9.51 |
0.338446 |
88 -- 115 |
123 -- 150 |
inosine/guanosine kinase |
|
_____________87_____________116\n_____________|______________|\n5'-UUU...UCGCC_________AC___CCGUA...CUG-3'\n______________GCUCAGUUA__CAC\n______________:||||||:|__|||\n______________UGAGUCAGU__GUG\n3'-UUU...GGUUA______________UACUA...UAG-5'\n_____________|______________|\n_____________151____________122\n |
175 -- 181 |
171 -- 177 |
-13.3754 kcal/mol |
2.68541 kcal/mol |
0.283892 kcal/mol |
87 116@LB@ | |@LB@5'-UUU...UCGCC AC CCGUA...CUG-3'@LB@ GCUCAGUUA CAC@LB@ :||||||:| |||@LB@ UGAGUCAGU GUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 151 122@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.3754 kcal/mol@LB@Unfolding Energy - mRNA 2.68541 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 88 -- 115@LB@Position - sRNA 123 -- 150@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 171 -- 177@LB@ |
90 |
0.01008 |
0.3575 |
b3994 |
thiC |
-11.53 |
0.138483 |
145 -- 158 |
1 -- 14 |
phosphomethylpyrimidine synthase |
|
_____________144_________159\n_____________|___________|\n5'-AUG...CGUCU___________CGUCG...UUU-3'\n______________CUUGCUUCAUC\n______________|||||||||||\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________15_________1\n |
152 -- 158 |
1 -- 7 |
-17.5294 kcal/mol |
1.22878 kcal/mol |
1.03329 kcal/mol |
144 159@LB@ | |@LB@5'-AUG...CGUCU CGUCG...UUU-3'@LB@ CUUGCUUCAUC@LB@ |||||||||||@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -17.5294 kcal/mol@LB@Unfolding Energy - mRNA 1.22878 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 145 -- 158@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
91 |
0.01018 |
0.3575 |
b1660 |
ydhC |
-16.12 |
0.016020 |
223 -- 255 |
172 -- 209 |
putative arabinose efflux transporter |
|
_____________222_____________________________________256\n_____________|_______________________________________|\n5'-GAA...AUUUU______G_________________A______________UUCUG...AGG-3'\n______________UAGUCU_GCUGGCGGGU____UUG_GC__GUACUCGGUU\n______________||:|||_||||||||||____||:_:|__:|||||:||:\n______________AUUAGA_CGACCGCCCA____AAU_UG__UAUGAGUCAG\n3'-UUU...UCCAU_________________CUAA___G__GU__________UGUGU...UAG-5'\n_____________|_______________________________________|\n_____________210_____________________________________171\n |
249 -- 255 |
172 -- 178 |
-38.0361 kcal/mol |
10.2504 kcal/mol |
15.0669 kcal/mol |
222 256@LB@ | |@LB@5'-GAA...AUUUU G A UUCUG...AGG-3'@LB@ UAGUCU GCUGGCGGGU UUG GC GUACUCGGUU@LB@ ||:||| |||||||||| ||: :| :|||||:||:@LB@ AUUAGA CGACCGCCCA AAU UG UAUGAGUCAG@LB@3'-UUU...UCCAU CUAA G GU UGUGU...UAG-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.12 kcal/mol@LB@Hybridization Energy -38.0361 kcal/mol@LB@Unfolding Energy - mRNA 10.2504 kcal/mol@LB@Unfolding Energy - sRNA 15.0669 kcal/mol@LB@@LB@Position - mRNA 223 -- 255@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 172 -- 178@LB@ |
92 |
0.01029 |
0.3575 |
b3360 |
pabA |
-10.28 |
0.244097 |
93 -- 100 |
16 -- 23 |
aminodeoxychorismate synthase subunit II |
|
_____________92__________101\n_____________|___________|\n5'-GCG...ACCUC___________UUGUG...CGU-3'\n______________UACCAGUACUU\n______________:||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________24__________15\n |
250 -- 256 |
176 -- 182 |
-13.2399 kcal/mol |
3.06354 kcal/mol |
3.38772 kcal/mol |
92 101@LB@ | |@LB@5'-GCG...ACCUC UUGUG...CGU-3'@LB@ UACCAGUACUU@LB@ :||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 24 15@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -13.2399 kcal/mol@LB@Unfolding Energy - mRNA 3.06354 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 93 -- 100@LB@Position - sRNA 16 -- 23@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 176 -- 182@LB@ |
93 |
0.01041 |
0.3575 |
b3556 |
cspA |
-12.65 |
0.082193 |
78 -- 98 |
139 -- 160 |
RNA chaperone and antiterminator cold-inducible |
|
_____________77_____________________99\n_____________|______________________|\n5'-AUU...UAGUA_________C____CA______AUCGU...ACU-3'\n______________AGGCAAGUC__CUU__AGAGUU\n______________|||||||||__|||__|||:||\n______________UCCGUUCAG__GAA__UCUUAA\n3'-UUU...CUACG_________UU___AG______CGCCA...UAG-5'\n_____________|______________________|\n_____________161____________________138\n |
80 -- 86 |
152 -- 158 |
-20.4019 kcal/mol |
4.68257 kcal/mol |
5.76704 kcal/mol |
77 99@LB@ | |@LB@5'-AUU...UAGUA C CA AUCGU...ACU-3'@LB@ AGGCAAGUC CUU AGAGUU@LB@ ||||||||| ||| |||:||@LB@ UCCGUUCAG GAA UCUUAA@LB@3'-UUU...CUACG UU AG CGCCA...UAG-5'@LB@ | |@LB@ 161 138@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.4019 kcal/mol@LB@Unfolding Energy - mRNA 4.68257 kcal/mol@LB@Unfolding Energy - sRNA 5.76704 kcal/mol@LB@@LB@Position - mRNA 78 -- 98@LB@Position - sRNA 139 -- 160@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 152 -- 158@LB@ |
94 |
0.01043 |
0.3575 |
b4293 |
fecI |
-12.90 |
0.072974 |
203 -- 229 |
60 -- 87 |
RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor |
|
_____________202_______________________230\n_____________|_________________________|\n5'-AAU...AUCCC__________UAC_____UA_____UUAGA...AGU-3'\n______________AUUUUAUACC____CUUA___ACAC\n______________||||||:|||____||:|___||||\n______________UAAAAUGUGG____GAGU___UGUG\n3'-UUU...CCCAC__________UUAU____CAG____UACUA...UAG-5'\n_____________|_________________________|\n_____________88________________________59\n |
66 -- 72 |
183 -- 189 |
-15.6606 kcal/mol |
1.17775 kcal/mol |
4.92862 kcal/mol |
202 230@LB@ | |@LB@5'-AAU...AUCCC UAC UA UUAGA...AGU-3'@LB@ AUUUUAUACC CUUA ACAC@LB@ ||||||:||| ||:| ||||@LB@ UAAAAUGUGG GAGU UGUG@LB@3'-UUU...CCCAC UUAU CAG UACUA...UAG-5'@LB@ | |@LB@ 88 59@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -15.6606 kcal/mol@LB@Unfolding Energy - mRNA 1.17775 kcal/mol@LB@Unfolding Energy - sRNA 4.92862 kcal/mol@LB@@LB@Position - mRNA 203 -- 229@LB@Position - sRNA 60 -- 87@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 183 -- 189@LB@ |
95 |
0.01047 |
0.3575 |
b4232 |
fbp |
-15.00 |
0.027086 |
59 -- 98 |
140 -- 173 |
fructose-1 6-bisphosphatase I |
|
_____________58_______________________________________________99\n_____________|________________________________________________|\n5'-AAA...CUGCC_____UU____________U_________G_GAAAC__A_________AAUCC...CCA-3'\n______________GCUCA__UUACGCAU_AUG_CGGGCAAGU_A_____GC_UUUCAGGAU\n______________:||||__|:||:|||_|||_|:|||||||_|_____:|_||||||:||\n______________UGAGU__AGUGUGUA_UAC_GUCCGUUCA_U_____UG_AAAGUCUUA\n3'-UUU...GGUUA_____C_________C_____________G__________________ACGCC...UAG-5'\n_____________|________________________________________________|\n_____________174______________________________________________139\n |
92 -- 98 |
140 -- 146 |
-39.7088 kcal/mol |
14.0477 kcal/mol |
8.83532 kcal/mol |
58 99@LB@ | |@LB@5'-AAA...CUGCC UU U G GAAAC A AAUCC...CCA-3'@LB@ GCUCA UUACGCAU AUG CGGGCAAGU A GC UUUCAGGAU@LB@ :|||| |:||:||| ||| |:||||||| | :| ||||||:||@LB@ UGAGU AGUGUGUA UAC GUCCGUUCA U UG AAAGUCUUA@LB@3'-UUU...GGUUA C C G ACGCC...UAG-5'@LB@ | |@LB@ 174 139@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -39.7088 kcal/mol@LB@Unfolding Energy - mRNA 14.0477 kcal/mol@LB@Unfolding Energy - sRNA 8.83532 kcal/mol@LB@@LB@Position - mRNA 59 -- 98@LB@Position - sRNA 140 -- 173@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 140 -- 146@LB@ |
96 |
0.01055 |
0.3575 |
b1953 |
yodD |
-11.39 |
0.147949 |
264 -- 273 |
196 -- 205 |
uncharacterized protein |
|
_____________263_____274\n_____________|_______|\n5'-CCA...UUCAC_______GUUUU...AAG-3'\n______________CUUCAUC\n______________|||||||\n______________GAAGUAG\n3'-UUU...GGAAC_______-5'\n_____________|______|\n_____________206____196\n |
33 -- 39 |
1 -- 7 |
-8.82286 kcal/mol |
0.690587 kcal/mol |
0.701705 kcal/mol |
263 274@LB@ | |@LB@5'-CCA...UUCAC GUUUU...AAG-3'@LB@ CUUCAUC@LB@ |||||||@LB@ GAAGUAG@LB@3'-UUU...GGAAC -5'@LB@ | |@LB@ 206 196@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -8.82286 kcal/mol@LB@Unfolding Energy - mRNA 0.690587 kcal/mol@LB@Unfolding Energy - sRNA 0.701705 kcal/mol@LB@@LB@Position - mRNA 264 -- 273@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 1 -- 7@LB@ |
97 |
0.01056 |
0.3575 |
b2372 |
yfdV |
-22.84 |
0.000764 |
17 -- 36 |
167 -- 186 |
putative transporter |
|
_____________16___________________37\n_____________|____________________|\n5'-UUC...UUAAC____________________AACCG...CUC-3'\n______________CACCGGUAUUCAGUCGCGCA\n______________||||::||:||||||:|:||\n______________GUGGUUAUGAGUCAGUGUGU\n3'-UUU...AAAAU____________________ACUAC...UAG-5'\n_____________|____________________|\n_____________187__________________166\n |
30 -- 36 |
167 -- 173 |
-32.2779 kcal/mol |
2.6891 kcal/mol |
5.05466 kcal/mol |
16 37@LB@ | |@LB@5'-UUC...UUAAC AACCG...CUC-3'@LB@ CACCGGUAUUCAGUCGCGCA@LB@ ||||::||:||||||:|:||@LB@ GUGGUUAUGAGUCAGUGUGU@LB@3'-UUU...AAAAU ACUAC...UAG-5'@LB@ | |@LB@ 187 166@LB@@LB@@LB@Energy -22.84 kcal/mol@LB@Hybridization Energy -32.2779 kcal/mol@LB@Unfolding Energy - mRNA 2.6891 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 17 -- 36@LB@Position - sRNA 167 -- 186@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 167 -- 173@LB@ |
98 |
0.01073 |
0.3575 |
b0424 |
yajL |
-11.45 |
0.143367 |
14 -- 29 |
155 -- 170 |
oxidative-stress-resistance chaperone |
|
_____________13_______________30\n_____________|________________|\n5'-AGA...GUGAU________________UUGAU...CCA-3'\n______________UACGUGAUGCAGGUGA\n______________:||:|||||||||::|\n______________GUGUACUACGUCCGUU\n3'-UUU...UCAGU________________CAGUU...UAG-5'\n_____________|________________|\n_____________171______________154\n |
22 -- 28 |
156 -- 162 |
-24.1359 kcal/mol |
6.48358 kcal/mol |
7.06607 kcal/mol |
13 30@LB@ | |@LB@5'-AGA...GUGAU UUGAU...CCA-3'@LB@ UACGUGAUGCAGGUGA@LB@ :||:|||||||||::|@LB@ GUGUACUACGUCCGUU@LB@3'-UUU...UCAGU CAGUU...UAG-5'@LB@ | |@LB@ 171 154@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -24.1359 kcal/mol@LB@Unfolding Energy - mRNA 6.48358 kcal/mol@LB@Unfolding Energy - sRNA 7.06607 kcal/mol@LB@@LB@Position - mRNA 14 -- 29@LB@Position - sRNA 155 -- 170@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 156 -- 162@LB@ |
99 |
0.01084 |
0.3575 |
b0872 |
hcr |
-12.58 |
0.084706 |
106 -- 121 |
192 -- 205 |
HCP oxidoreductase NADH-dependent |
|
_____________105______________122\n_____________|________________|\n5'-UCC...CAGAC__________U_C___ACGAG...AUU-3'\n______________CUGCUGGCGG_G_UGA\n______________||||||||||_|_|||\n______________GACGACCGCC_C_ACU\n3'-UUU...UAUUA________________AAAAU...UAG-5'\n_____________|________________|\n_____________206______________191\n |
109 -- 115 |
196 -- 202 |
-24.2797 kcal/mol |
6.55023 kcal/mol |
9.06563 kcal/mol |
105 122@LB@ | |@LB@5'-UCC...CAGAC U C ACGAG...AUU-3'@LB@ CUGCUGGCGG G UGA@LB@ |||||||||| | |||@LB@ GACGACCGCC C ACU@LB@3'-UUU...UAUUA AAAAU...UAG-5'@LB@ | |@LB@ 206 191@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -24.2797 kcal/mol@LB@Unfolding Energy - mRNA 6.55023 kcal/mol@LB@Unfolding Energy - sRNA 9.06563 kcal/mol@LB@@LB@Position - mRNA 106 -- 121@LB@Position - sRNA 192 -- 205@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 196 -- 202@LB@ |
100 |
0.01091 |
0.3575 |
b0123 |
cueO |
-12.06 |
0.108476 |
211 -- 256 |
146 -- 195 |
multicopper oxidase (laccase) |
|
_____________210________________________________________________257\n_____________|__________________________________________________|\n5'-CUG...ACGUC_______CUUAA________C_______UG_________U__________GCCGC...CGU-3'\n______________GUGAUUU______AAUAUUC_GUCGCGC__GGUGU_GGC___UCGGCUUU\n______________|||||||______||||:||_|||:|:|__|:||:_|||___||::||||\n______________CACUAAA______UUAUGAG_CAGUGUG__CUACG_CCG___AGUUGAAA\n3'-UUU...CCGCC_______AUGUGG_______U_______UA_____U___UUC________GUCUU...UAG-5'\n_____________|__________________________________________________|\n_____________196________________________________________________145\n |
250 -- 256 |
146 -- 152 |
-42.9672 kcal/mol |
13.2361 kcal/mol |
12.9468 kcal/mol |
210 257@LB@ | |@LB@5'-CUG...ACGUC CUUAA C UG U GCCGC...CGU-3'@LB@ GUGAUUU AAUAUUC GUCGCGC GGUGU GGC UCGGCUUU@LB@ ||||||| ||||:|| |||:|:| |:||: ||| ||::||||@LB@ CACUAAA UUAUGAG CAGUGUG CUACG CCG AGUUGAAA@LB@3'-UUU...CCGCC AUGUGG U UA U UUC GUCUU...UAG-5'@LB@ | |@LB@ 196 145@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -42.9672 kcal/mol@LB@Unfolding Energy - mRNA 13.2361 kcal/mol@LB@Unfolding Energy - sRNA 12.9468 kcal/mol@LB@@LB@Position - mRNA 211 -- 256@LB@Position - sRNA 146 -- 195@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 146 -- 152@LB@ |
101 |
0.01097 |
0.3575 |
b1882 |
cheY |
-8.64 |
0.475467 |
226 -- 255 |
72 -- 99 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________225_______________256\n_____________|_________________|\n5'-GCG...AGGCG_______GGA_______GCAAA...UUG-3'\n______________GGGGCAU___CCCUUGC\n______________||||||:___|||||||\n______________CCCCGUG___GGGAACG\n3'-UUU...GCGUA_______G_________AAGUAG-5'\n_____________|_________________|\n_____________100_______________71\n |
38 -- 44 |
7 -- 13 |
-25.3164 kcal/mol |
8.48869 kcal/mol |
10.1447 kcal/mol |
225 256@LB@ | |@LB@5'-GCG...AGGCG GGA GCAAA...UUG-3'@LB@ GGGGCAU CCCUUGC@LB@ ||||||: |||||||@LB@ CCCCGUG GGGAACG@LB@3'-UUU...GCGUA G AAGUAG-5'@LB@ | |@LB@ 100 71@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -25.3164 kcal/mol@LB@Unfolding Energy - mRNA 8.48869 kcal/mol@LB@Unfolding Energy - sRNA 10.1447 kcal/mol@LB@@LB@Position - mRNA 226 -- 255@LB@Position - sRNA 72 -- 99@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 7 -- 13@LB@ |
102 |
0.01106 |
0.3575 |
b0647 |
ybeT |
-15.01 |
0.026876 |
192 -- 264 |
115 -- 176 |
Sel1 family TPR-like repeat protein |
|
_____________191___________265\n_____________|_____________|\n5'-AUA...CGAAG__U__________AUAAA...UGG-3'\n______________CA_UCACACAUGA\n______________||_||||||||||\n______________GU_AGUGUGUACU\n3'-UUU...UAUGA__C__________ACGUC...UAG-5'\n_____________|_____________|\n_____________177___________114\n |
198 -- 204 |
164 -- 170 |
-15.9732 kcal/mol |
2.87622 kcal/mol |
4.17773 kcal/mol |
191 265@LB@ | |@LB@5'-AUA...CGAAG U AUAAA...UGG-3'@LB@ CA UCACACAUGA@LB@ || ||||||||||@LB@ GU AGUGUGUACU@LB@3'-UUU...UAUGA C ACGUC...UAG-5'@LB@ | |@LB@ 177 114@LB@@LB@@LB@Energy -15.01 kcal/mol@LB@Hybridization Energy -15.9732 kcal/mol@LB@Unfolding Energy - mRNA 2.87622 kcal/mol@LB@Unfolding Energy - sRNA 4.17773 kcal/mol@LB@@LB@Position - mRNA 192 -- 264@LB@Position - sRNA 115 -- 176@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 164 -- 170@LB@ |
103 |
0.0111 |
0.3575 |
b2821 |
ptrA |
-11.45 |
0.143539 |
261 -- 295 |
141 -- 175 |
protease III |
|
_____________260_______________________________________296\n_____________|_________________________________________|\n5'-GCU...GCACC___A_____G______AA____AU_______CGA_______AACCA-3'\n______________CUU_AGUCA_GCA_GA__CGGG__GG_CAGC___UUCAGGA\n______________||:_|||||_:||_||__|:||__:|_||:|___|||||:|\n______________GAG_UCAGU_UGU_CU__GUCC__UC_GUUG___AAGUCUU\n3'-UUU...GUUAU_________G___A__AC____GU__A____A_________AACGC...UAG-5'\n_____________|_________________________________________|\n_____________176_______________________________________140\n |
289 -- 295 |
141 -- 147 |
-30.7779 kcal/mol |
8.8583 kcal/mol |
8.83168 kcal/mol |
260 296@LB@ | |@LB@5'-GCU...GCACC A G AA AU CGA AACCA-3'@LB@ CUU AGUCA GCA GA CGGG GG CAGC UUCAGGA@LB@ ||: ||||| :|| || |:|| :| ||:| |||||:|@LB@ GAG UCAGU UGU CU GUCC UC GUUG AAGUCUU@LB@3'-UUU...GUUAU G A AC GU A A AACGC...UAG-5'@LB@ | |@LB@ 176 140@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -30.7779 kcal/mol@LB@Unfolding Energy - mRNA 8.8583 kcal/mol@LB@Unfolding Energy - sRNA 8.83168 kcal/mol@LB@@LB@Position - mRNA 261 -- 295@LB@Position - sRNA 141 -- 175@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 141 -- 147@LB@ |
104 |
0.01113 |
0.3575 |
b2108 |
yehA |
-14.54 |
0.033608 |
284 -- 300 |
56 -- 72 |
putative fimbrial-like adhesin protein |
|
_____________283_____________300\n_____________|_______________|\n5'-GUU...CUGUU___________G____-3'\n______________CAGCACAACUU_GUUG\n______________|||||||||||_|:||\n______________GUCGUGUUGAA_CGAC\n3'-UUU...CGUUG___________G____AGCGC...UAG-5'\n_____________|________________|\n_____________73_______________55\n |
289 -- 295 |
61 -- 67 |
-24.1215 kcal/mol |
2.36332 kcal/mol |
11.1531 kcal/mol |
283 300@LB@ | |@LB@5'-GUU...CUGUU G -3'@LB@ CAGCACAACUU GUUG@LB@ ||||||||||| |:||@LB@ GUCGUGUUGAA CGAC@LB@3'-UUU...CGUUG G AGCGC...UAG-5'@LB@ | |@LB@ 73 55@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -24.1215 kcal/mol@LB@Unfolding Energy - mRNA 2.36332 kcal/mol@LB@Unfolding Energy - sRNA 11.1531 kcal/mol@LB@@LB@Position - mRNA 284 -- 300@LB@Position - sRNA 56 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 61 -- 67@LB@ |
105 |
0.01118 |
0.3575 |
b0439 |
lon |
-14.09 |
0.041610 |
272 -- 293 |
1 -- 24 |
DNA-binding ATP-dependent protease La |
|
_____________271_______294\n_____________|_________|\n5'-AUC...CACAU_________CUUAU...GGG-3'\n______________GGUCAUCCC\n______________|||||||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________25________0\n |
277 -- 283 |
128 -- 134 |
-16.7868 kcal/mol |
1.03204 kcal/mol |
4.55487 kcal/mol |
271 294@LB@ | |@LB@5'-AUC...CACAU CUUAU...GGG-3'@LB@ GGUCAUCCC@LB@ |||||||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 25 0@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -16.7868 kcal/mol@LB@Unfolding Energy - mRNA 1.03204 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 128 -- 134@LB@ |
106 |
0.01145 |
0.3575 |
b2350 |
gtrA |
-11.86 |
0.119007 |
4 -- 25 |
148 -- 167 |
CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase/flippase |
|
_____________3_____________26\n_____________|_____________|\n5'-GAA...UGUAU__AU_________ACAAACC-3'\n______________CU__GUCGCGCAU\n______________||__|||:|:|||\n______________GA__CAGUGUGUA\n3'-UUU...GUUAU__GU_________CUACG...UAG-5'\n_____________|_____________|\n_____________168___________147\n |
287 -- 293 |
166 -- 172 |
-13.6011 kcal/mol |
2.0532 kcal/mol |
0.604639 kcal/mol |
3 26@LB@ | |@LB@5'-GAA...UGUAU AU ACAAACC-3'@LB@ CU GUCGCGCAU@LB@ || |||:|:|||@LB@ GA CAGUGUGUA@LB@3'-UUU...GUUAU GU CUACG...UAG-5'@LB@ | |@LB@ 168 147@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -13.6011 kcal/mol@LB@Unfolding Energy - mRNA 2.0532 kcal/mol@LB@Unfolding Energy - sRNA 0.604639 kcal/mol@LB@@LB@Position - mRNA 4 -- 25@LB@Position - sRNA 148 -- 167@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 166 -- 172@LB@ |
107 |
0.01169 |
0.3575 |
b3858 |
yihD |
-12.50 |
0.087903 |
89 -- 104 |
63 -- 77 |
DUF1040 protein YihD |
|
_____________88______________________________105\n_____________|_______________________________|\n5'-AUA...UUUAC___CU___________GCC____AUC_____CAUCA...CGA-3'\n______________CGC__GCCAGCACAAC___UGUU___GUCGU\n______________|||__:||||||||||___:|:|___||||:\n______________GCG__UGGUCGUGUUG___GCGA___CAGCG\n3'-UUU...UGGUU___U____________AA_____________CCAUU...UAG-5'\n_____________|_______________________________|\n_____________78______________________________62\n |
98 -- 104 |
63 -- 69 |
-31.4348 kcal/mol |
4.67185 kcal/mol |
17.7932 kcal/mol |
88 105@LB@ | |@LB@5'-AUA...UUUAC CU GCC AUC CAUCA...CGA-3'@LB@ CGC GCCAGCACAAC UGUU GUCGU@LB@ ||| :|||||||||| :|:| ||||:@LB@ GCG UGGUCGUGUUG GCGA CAGCG@LB@3'-UUU...UGGUU U AA CCAUU...UAG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -31.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.67185 kcal/mol@LB@Unfolding Energy - sRNA 17.7932 kcal/mol@LB@@LB@Position - mRNA 89 -- 104@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 63 -- 69@LB@ |
108 |
0.01175 |
0.3575 |
b0723 |
sdhA |
-10.39 |
0.232370 |
178 -- 209 |
28 -- 62 |
succinate dehydrogenase flavoprotein subunit |
|
_____________177_______________________210\n_____________|_________________________|\n5'-GGU...GAAAU__________G_G_AUU________UUGUG...GUG-3'\n______________UGC_CAGUCA_A_A___UGAUGCAG\n______________|:|_||||||_|_|___||||||||\n______________AUG_GUCAGU_U_U___ACUACGUC\n3'-UUU...UGGUU___A______G_G____________CGUUC...UAG-5'\n_____________|_________________________|\n_____________63________________________27\n |
225 -- 231 |
159 -- 165 |
-22.5908 kcal/mol |
8.24888 kcal/mol |
4.81331 kcal/mol |
177 210@LB@ | |@LB@5'-GGU...GAAAU G G AUU UUGUG...GUG-3'@LB@ UGC CAGUCA A A UGAUGCAG@LB@ |:| |||||| | | ||||||||@LB@ AUG GUCAGU U U ACUACGUC@LB@3'-UUU...UGGUU A G G CGUUC...UAG-5'@LB@ | |@LB@ 63 27@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -22.5908 kcal/mol@LB@Unfolding Energy - mRNA 8.24888 kcal/mol@LB@Unfolding Energy - sRNA 4.81331 kcal/mol@LB@@LB@Position - mRNA 178 -- 209@LB@Position - sRNA 28 -- 62@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
109 |
0.01201 |
0.3575 |
b1096 |
pabC |
-8.08 |
0.578936 |
115 -- 139 |
144 -- 163 |
4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex |
|
_____________114____________140\n_____________|______________|\n5'-GUU...GUGUA_______CG_____GGUGG...ACG-3'\n______________ACUCCUU__GCUUC\n______________||:||:|__|||||\n______________UGGGGGA__CGAAG\n3'-UUU...CCCCG_______A______UAG-5'\n_____________|______________|\n_____________164____________143\n |
29 -- 35 |
10 -- 16 |
-15.037 kcal/mol |
0.971533 kcal/mol |
6.96912 kcal/mol |
114 140@LB@ | |@LB@5'-GUU...GUGUA CG GGUGG...ACG-3'@LB@ ACUCCUU GCUUC@LB@ ||:||:| |||||@LB@ UGGGGGA CGAAG@LB@3'-UUU...CCCCG A UAG-5'@LB@ | |@LB@ 164 143@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -15.037 kcal/mol@LB@Unfolding Energy - mRNA 0.971533 kcal/mol@LB@Unfolding Energy - sRNA 6.96912 kcal/mol@LB@@LB@Position - mRNA 115 -- 139@LB@Position - sRNA 144 -- 163@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 10 -- 16@LB@ |
110 |
0.01217 |
0.3575 |
b1324 |
tpx |
-10.54 |
0.217228 |
251 -- 258 |
126 -- 133 |
lipid hydroperoxide peroxidase |
|
_____________250____________259\n_____________|______________|\n5'-GCG...ACUCC______________GUCUG...AAG-3'\n______________UUGUUGUCGCGGUG\n______________|:|:|||||||||:\n______________AGCGACAGCGCCAU\n3'-UUU...GUUGA______________UUUAU...UAG-5'\n_____________|______________|\n_____________134____________125\n |
99 -- 105 |
48 -- 54 |
-22.761 kcal/mol |
7.03952 kcal/mol |
5.88061 kcal/mol |
250 259@LB@ | |@LB@5'-GCG...ACUCC GUCUG...AAG-3'@LB@ UUGUUGUCGCGGUG@LB@ |:|:|||||||||:@LB@ AGCGACAGCGCCAU@LB@3'-UUU...GUUGA UUUAU...UAG-5'@LB@ | |@LB@ 134 125@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -22.761 kcal/mol@LB@Unfolding Energy - mRNA 7.03952 kcal/mol@LB@Unfolding Energy - sRNA 5.88061 kcal/mol@LB@@LB@Position - mRNA 251 -- 258@LB@Position - sRNA 126 -- 133@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 48 -- 54@LB@ |
111 |
0.0122 |
0.3575 |
b1813 |
nudL |
-9.44 |
0.347588 |
99 -- 131 |
174 -- 206 |
putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase |
|
_____________98________________________________132\n_____________|_________________________________|\n5'-CCU...UCUGC_____G_____UG__A__GU________GC___GAAGA...CUG-3'\n______________UCUGC_GGCGG__GA_UU__CGCCGAUA__CAG\n______________|||||_|||||__||_||__|:||:|||__|||\n______________AGACG_CCGCC__CU_AA__GUGGUUAU__GUC\n3'-UUU...AUAUU_____A_____CA__A__AU________GA___AGUGU...UAG-5'\n_____________|_________________________________|\n_____________207_______________________________173\n |
120 -- 126 |
179 -- 185 |
-36.2385 kcal/mol |
15.3331 kcal/mol |
14.8345 kcal/mol |
98 132@LB@ | |@LB@5'-CCU...UCUGC G UG A GU GC GAAGA...CUG-3'@LB@ UCUGC GGCGG GA UU CGCCGAUA CAG@LB@ ||||| ||||| || || |:||:||| |||@LB@ AGACG CCGCC CU AA GUGGUUAU GUC@LB@3'-UUU...AUAUU A CA A AU GA AGUGU...UAG-5'@LB@ | |@LB@ 207 173@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -36.2385 kcal/mol@LB@Unfolding Energy - mRNA 15.3331 kcal/mol@LB@Unfolding Energy - sRNA 14.8345 kcal/mol@LB@@LB@Position - mRNA 99 -- 131@LB@Position - sRNA 174 -- 206@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 179 -- 185@LB@ |
112 |
0.01232 |
0.3575 |
b1540 |
rspR |
-15.19 |
0.024761 |
13 -- 44 |
171 -- 202 |
transcriptional repressor for rspAB |
|
_____________12_________________________________________________________45\n_____________|__________________________________________________________|\n5'-CAG...GCCGU__________UCA_______GCC______C___A____CAAUACCCUGGAA_______CGGUU...GCA-3'\n______________CUGGUGGGUG_____ACGCU___UGCUCA_GUC_AUAU_____________AUGAUGC\n______________||||:|||||_____||:|:___|:||||_|||_|:|:_____________|||||||\n______________GACCGCCCAC_____UGUGG___AUGAGU_CAG_UGUG_____________UACUACG\n3'-UUU...UAGAC__________UAAAA_____UU____________________________________UCCGU...UAG-5'\n_____________|__________________________________________________________|\n_____________203________________________________________________________170\n |
62 -- 68 |
161 -- 167 |
-40.6001 kcal/mol |
15.8189 kcal/mol |
17.3482 kcal/mol |
12 45@LB@ | |@LB@5'-CAG...GCCGU UCA GCC C A CAAUACCCUGGAA CGGUU...GCA-3'@LB@ CUGGUGGGUG ACGCU UGCUCA GUC AUAU AUGAUGC@LB@ ||||:||||| ||:|: |:|||| ||| |:|: |||||||@LB@ GACCGCCCAC UGUGG AUGAGU CAG UGUG UACUACG@LB@3'-UUU...UAGAC UAAAA UU UCCGU...UAG-5'@LB@ | |@LB@ 203 170@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -40.6001 kcal/mol@LB@Unfolding Energy - mRNA 15.8189 kcal/mol@LB@Unfolding Energy - sRNA 17.3482 kcal/mol@LB@@LB@Position - mRNA 13 -- 44@LB@Position - sRNA 171 -- 202@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 161 -- 167@LB@ |
113 |
0.01268 |
0.3575 |
b2066 |
udk |
-9.33 |
0.364673 |
240 -- 253 |
17 -- 31 |
uridine/cytidine kinase |
|
_____________239________________254\n_____________|__________________|\n5'-CGC...UUCGU_________C__AA____CAGGU...GUG-3'\n______________CGCCCCCUU_CU__CAUC\n______________|:|||||||_||__||||\n______________GUGGGGGAA_GA__GUAG\n3'-UUU...ACCCC_________C__A_____-5'\n_____________|_________________|\n_____________32________________17\n |
161 -- 167 |
9 -- 15 |
-20.5437 kcal/mol |
3.26859 kcal/mol |
7.16879 kcal/mol |
239 254@LB@ | |@LB@5'-CGC...UUCGU C AA CAGGU...GUG-3'@LB@ CGCCCCCUU CU CAUC@LB@ |:||||||| || ||||@LB@ GUGGGGGAA GA GUAG@LB@3'-UUU...ACCCC C A -5'@LB@ | |@LB@ 32 17@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -20.5437 kcal/mol@LB@Unfolding Energy - mRNA 3.26859 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 240 -- 253@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 9 -- 15@LB@ |
114 |
0.01268 |
0.3575 |
b0888 |
trxB |
-13.24 |
0.061992 |
5 -- 14 |
83 -- 92 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________4__________15\n_____________|__________|\n_______5'-AACA__________UUCAU...UGC-3'\n______________GGGGCGUUUA\n______________|||:||:|||\n______________CCCUGCGAAU\n3'-UUU...CAACA__________UGGUU...UAG-5'\n_____________|__________|\n_____________93_________82\n |
7 -- 13 |
84 -- 90 |
-15.9307 kcal/mol |
0.512019 kcal/mol |
6.69187 kcal/mol |
4 15@LB@ | |@LB@ 5'-AACA UUCAU...UGC-3'@LB@ GGGGCGUUUA@LB@ |||:||:|||@LB@ CCCUGCGAAU@LB@3'-UUU...CAACA UGGUU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -15.9307 kcal/mol@LB@Unfolding Energy - mRNA 0.512019 kcal/mol@LB@Unfolding Energy - sRNA 6.69187 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 84 -- 90@LB@ |
115 |
0.01273 |
0.3575 |
b3440 |
yhhX |
-9.67 |
0.316530 |
203 -- 215 |
123 -- 136 |
putative oxidoreductase |
|
_____________202______________________________216\n_____________|________________________________|\n5'-GAC...CGUAU_______AC____AG____A__U____U____CGCAUA-3'\n______________GUACUUA__CGCA___GAU_GC_GGCA_GUCG\n______________:||||:|__|:||___|||_||_||||_|||:\n______________UAUGAGU__GUGU___CUA_CG_CCGU_CAGU\n3'-UUU...GUGGU_______CA____GUA______U____U____UGAAA...UAG-5'\n_____________|________________________________|\n_____________137______________________________122\n |
264 -- 270 |
175 -- 181 |
-25.3028 kcal/mol |
7.53441 kcal/mol |
8.15082 kcal/mol |
202 216@LB@ | |@LB@5'-GAC...CGUAU AC AG A U U CGCAUA-3'@LB@ GUACUUA CGCA GAU GC GGCA GUCG@LB@ :||||:| |:|| ||| || |||| |||:@LB@ UAUGAGU GUGU CUA CG CCGU CAGU@LB@3'-UUU...GUGGU CA GUA U U UGAAA...UAG-5'@LB@ | |@LB@ 137 122@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -25.3028 kcal/mol@LB@Unfolding Energy - mRNA 7.53441 kcal/mol@LB@Unfolding Energy - sRNA 8.15082 kcal/mol@LB@@LB@Position - mRNA 203 -- 215@LB@Position - sRNA 123 -- 136@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 175 -- 181@LB@ |
116 |
0.01276 |
0.3575 |
b2989 |
yghU |
-14.25 |
0.038539 |
247 -- 281 |
170 -- 208 |
putative S-transferase |
|
_____________246______________________________________282\n_____________|________________________________________|\n5'-UUA...GGAUA____C________C_C_UU________________A____CCGGU...CGC-3'\n______________AAUC_GCUGGCGG_G_G______CGCCAAUA_UCA_UCGC\n______________||||_||||||||_|_|______|:||||||_|||_||:|\n______________UUAG_CGACCGCC_C_C______GUGGUUAU_AGU_AGUG\n3'-UUU...CCAUA____A__________A_UAAAAU________G___C____UGUAC...UAG-5'\n_____________|________________________________________|\n_____________209______________________________________169\n |
267 -- 273 |
179 -- 185 |
-35.9489 kcal/mol |
9.63265 kcal/mol |
15.256 kcal/mol |
246 282@LB@ | |@LB@5'-UUA...GGAUA C C C UU A CCGGU...CGC-3'@LB@ AAUC GCUGGCGG G G CGCCAAUA UCA UCGC@LB@ |||| |||||||| | | |:|||||| ||| ||:|@LB@ UUAG CGACCGCC C C GUGGUUAU AGU AGUG@LB@3'-UUU...CCAUA A A UAAAAU G C UGUAC...UAG-5'@LB@ | |@LB@ 209 169@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -35.9489 kcal/mol@LB@Unfolding Energy - mRNA 9.63265 kcal/mol@LB@Unfolding Energy - sRNA 15.256 kcal/mol@LB@@LB@Position - mRNA 247 -- 281@LB@Position - sRNA 170 -- 208@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 179 -- 185@LB@ |
117 |
0.01283 |
0.3575 |
b3096 |
mzrA |
-10.41 |
0.230387 |
15 -- 55 |
168 -- 208 |
modulator of EnvZ/OmpR regulon |
|
_____________14________________________________________________________56\n_____________|_________________________________________________________|\n_____5'-UCAACU____G____________________________GAUCCUGA___CU__G________GCUCG...AGC-3'\n______________GGAU_AGCGG______UCUGCU_GUGGGU_AUU________CAA__CU_GGUUACAU\n______________::|:_|||:|______||||||_|:||||_|||________|||__||_:||:|||:\n______________UUUG_UCGUC______AGACGA_CGCCCA_UAA________GUU__GA_UCAGUGUG\n______3'-UUUUU____G_____CAUAUU______C______C___AAUGUG_____AU__G________UACUA...UAG-5'\n_____________|_________________________________________________________|\n_____________209_______________________________________________________167\n |
49 -- 55 |
168 -- 174 |
-40.4023 kcal/mol |
11.8856 kcal/mol |
18.3074 kcal/mol |
14 56@LB@ | |@LB@ 5'-UCAACU G GAUCCUGA CU G GCUCG...AGC-3'@LB@ GGAU AGCGG UCUGCU GUGGGU AUU CAA CU GGUUACAU@LB@ ::|: |||:| |||||| |:|||| ||| ||| || :||:|||:@LB@ UUUG UCGUC AGACGA CGCCCA UAA GUU GA UCAGUGUG@LB@ 3'-UUUUU G CAUAUU C C AAUGUG AU G UACUA...UAG-5'@LB@ | |@LB@ 209 167@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -40.4023 kcal/mol@LB@Unfolding Energy - mRNA 11.8856 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 15 -- 55@LB@Position - sRNA 168 -- 208@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 168 -- 174@LB@ |
118 |
0.01293 |
0.3575 |
b1598 |
ydgD |
-17.08 |
0.010207 |
53 -- 140 |
115 -- 186 |
putative peptidase |
|
_____________52______________________________________________________________________141\n_____________|_______________________________________________________________________|\n5'-CUU...AUCCU_____UAUG__________UACC__CC___UUUAU_____CU______A____UCUGAUUUUAC_______UUCAU...AGG-3'\n______________UAUUU____CGCAC_UGAU____GC__GUU_____CUUUC__GAUUGU_GUUA___________UCCCACU\n______________||:|:____|:|||_||||____||__||:_____|||||__:||||:_||:|___________|||||||\n______________AUGAG____GUGUG_ACUA____CG__CAG_____GAAAG__UUAACG_CAGU___________AGGGUGA\n3'-UUU...UGGUU_____UCA______U____CGUC__UU___UU________UC______C______________________CGUAG...UAG-5'\n_____________|_______________________________________________________________________|\n_____________187_____________________________________________________________________114\n |
122 -- 128 |
125 -- 131 |
-34.2678 kcal/mol |
6.55961 kcal/mol |
16.6417 kcal/mol |
52 141@LB@ | |@LB@5'-CUU...AUCCU UAUG UACC CC UUUAU CU A UCUGAUUUUAC UUCAU...AGG-3'@LB@ UAUUU CGCAC UGAU GC GUU CUUUC GAUUGU GUUA UCCCACU@LB@ ||:|: |:||| |||| || ||: ||||| :||||: ||:| |||||||@LB@ AUGAG GUGUG ACUA CG CAG GAAAG UUAACG CAGU AGGGUGA@LB@3'-UUU...UGGUU UCA U CGUC UU UU UC C CGUAG...UAG-5'@LB@ | |@LB@ 187 114@LB@@LB@@LB@Energy -17.08 kcal/mol@LB@Hybridization Energy -34.2678 kcal/mol@LB@Unfolding Energy - mRNA 6.55961 kcal/mol@LB@Unfolding Energy - sRNA 16.6417 kcal/mol@LB@@LB@Position - mRNA 53 -- 140@LB@Position - sRNA 115 -- 186@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 125 -- 131@LB@ |
119 |
0.013 |
0.3575 |
b0801 |
ybiC |
-16.26 |
0.015008 |
158 -- 253 |
108 -- 187 |
putative dehydrogenase |
|
_____________157____________________________________________________________________________________________254\n_____________|______________________________________________________________________________________________|\n5'-GCU...AUAAA_____AA__AA______ACAUAAA_____________CAU_____A__________G_UUUGAUGCUCAGAC_____________UA_______UGUAU...UUG-3'\n______________AAUAC__CA__CACAUA_______CAGG__AGUUAAC____GGAA__GUGGUCAUC_C______________GCUGCA_CAGUUU__UUCAGGC\n______________|||||__||__||||:|_______||||__|||:|||____:|||__|:|||||||_|______________:|||||_||||::__||||:||\n______________UUAUG__GU__GUGUGU_______GUCC__UCAGUUG____UCUU__CGCCAGUAG_G______________UGACGU_GUCAGG__AAGUUCG\n3'-UUU...UGUGG_____A___CA______ACUAC______GU_______AAAG____AA_________G_____________________A_______________UACCA...UAG-5'\n_____________|______________________________________________________________________________________________|\n_____________188____________________________________________________________________________________________107\n |
247 -- 253 |
108 -- 114 |
-56.5044 kcal/mol |
18.8914 kcal/mol |
26.5178 kcal/mol |
157 254@LB@ | |@LB@5'-GCU...AUAAA AA AA ACAUAAA CAU A G UUUGAUGCUCAGAC UA UGUAU...UUG-3'@LB@ AAUAC CA CACAUA CAGG AGUUAAC GGAA GUGGUCAUC C GCUGCA CAGUUU UUCAGGC@LB@ ||||| || ||||:| |||| |||:||| :||| |:||||||| | :||||| ||||:: ||||:||@LB@ UUAUG GU GUGUGU GUCC UCAGUUG UCUU CGCCAGUAG G UGACGU GUCAGG AAGUUCG@LB@3'-UUU...UGUGG A CA ACUAC GU AAAG AA G A UACCA...UAG-5'@LB@ | |@LB@ 188 107@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -56.5044 kcal/mol@LB@Unfolding Energy - mRNA 18.8914 kcal/mol@LB@Unfolding Energy - sRNA 26.5178 kcal/mol@LB@@LB@Position - mRNA 158 -- 253@LB@Position - sRNA 108 -- 187@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 108 -- 114@LB@ |
120 |
0.01317 |
0.3575 |
b1158 |
pinE |
-11.56 |
0.136715 |
30 -- 59 |
115 -- 145 |
e14 prophage; site-specific DNA recombinase |
|
_____________29_____________________60\n_____________|______________________|\n5'-AGC...CCGGG______________GUA_____GAGCC...ACA-3'\n______________ACACCAA____CAG___AUGCA\n______________|||||||____|||___|::||\n______________UGUGGUU____GUC___UGUGU\n3'-UUU...UAAAA_______AUGA___AG______ACUAC...UAG-5'\n_____________|______________________|\n_____________146____________________114\n |
98 -- 104 |
181 -- 187 |
-13.8739 kcal/mol |
4.34554 kcal/mol |
5.05492 kcal/mol |
29 60@LB@ | |@LB@5'-AGC...CCGGG GUA GAGCC...ACA-3'@LB@ ACACCAA CAG AUGCA@LB@ ||||||| ||| |::||@LB@ UGUGGUU GUC UGUGU@LB@3'-UUU...UAAAA AUGA AG ACUAC...UAG-5'@LB@ | |@LB@ 146 114@LB@@LB@@LB@Energy -11.56 kcal/mol@LB@Hybridization Energy -13.8739 kcal/mol@LB@Unfolding Energy - mRNA 4.34554 kcal/mol@LB@Unfolding Energy - sRNA 5.05492 kcal/mol@LB@@LB@Position - mRNA 30 -- 59@LB@Position - sRNA 115 -- 145@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 181 -- 187@LB@ |
121 |
0.01323 |
0.3575 |
b3429 |
glgA |
-14.56 |
0.033318 |
190 -- 240 |
123 -- 176 |
glycogen synthase |
|
_____________189__________________241\n_____________|____________________|\n5'-GUA...AUGCA__________GU________AGAUG...ACG-3'\n______________GGUUUUACAU__AUGUUCAG\n______________|:|||||||:__||::||||\n______________CUAAAAUGUG__UAUGAGUC\n3'-UUU...GCCCA__________GU________AGUGU...UAG-5'\n_____________|____________________|\n_____________177__________________122\n |
219 -- 225 |
174 -- 180 |
-15.9439 kcal/mol |
3.46677 kcal/mol |
4.94566 kcal/mol |
189 241@LB@ | |@LB@5'-GUA...AUGCA GU AGAUG...ACG-3'@LB@ GGUUUUACAU AUGUUCAG@LB@ |:|||||||: ||::||||@LB@ CUAAAAUGUG UAUGAGUC@LB@3'-UUU...GCCCA GU AGUGU...UAG-5'@LB@ | |@LB@ 177 122@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -15.9439 kcal/mol@LB@Unfolding Energy - mRNA 3.46677 kcal/mol@LB@Unfolding Energy - sRNA 4.94566 kcal/mol@LB@@LB@Position - mRNA 190 -- 240@LB@Position - sRNA 123 -- 176@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 174 -- 180@LB@ |
122 |
0.01342 |
0.3575 |
b4087 |
alsA |
-13.14 |
0.065197 |
11 -- 23 |
124 -- 136 |
D-allose ABC transporter ATPase |
|
_____________10___________24\n_____________|____________|\n5'-AAU...GGCAA____________GGAUA...UAC-3'\n______________GGUUAUCCCGCU\n______________|||:|||||:||\n______________CCAGUAGGGUGA\n3'-UUU...UAACG____________CGUAG...UAG-5'\n_____________|____________|\n_____________137__________123\n |
16 -- 22 |
125 -- 131 |
-19.4238 kcal/mol |
3.3353 kcal/mol |
6.53419 kcal/mol |
10 24@LB@ | |@LB@5'-AAU...GGCAA GGAUA...UAC-3'@LB@ GGUUAUCCCGCU@LB@ |||:|||||:||@LB@ CCAGUAGGGUGA@LB@3'-UUU...UAACG CGUAG...UAG-5'@LB@ | |@LB@ 137 123@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -19.4238 kcal/mol@LB@Unfolding Energy - mRNA 3.3353 kcal/mol@LB@Unfolding Energy - sRNA 6.53419 kcal/mol@LB@@LB@Position - mRNA 11 -- 23@LB@Position - sRNA 124 -- 136@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 125 -- 131@LB@ |
123 |
0.01344 |
0.3575 |
b2615 |
nadK |
-10.03 |
0.271821 |
99 -- 122 |
57 -- 77 |
NAD kinase |
|
_____________98____________123\n_____________|_____________|\n5'-CUC...CCCAC________AC___ACUGA...AAG-3'\n______________GGCACCCC__UGC\n______________||||||||__|||\n______________CCGUGGGG__ACG\n3'-UUU...GUACC________GA___AAGUAG-5'\n_____________|_____________|\n_____________78____________56\n |
245 -- 251 |
12 -- 18 |
-21.986 kcal/mol |
5.26387 kcal/mol |
8.16826 kcal/mol |
98 123@LB@ | |@LB@5'-CUC...CCCAC AC ACUGA...AAG-3'@LB@ GGCACCCC UGC@LB@ |||||||| |||@LB@ CCGUGGGG ACG@LB@3'-UUU...GUACC GA AAGUAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.03 kcal/mol@LB@Hybridization Energy -21.986 kcal/mol@LB@Unfolding Energy - mRNA 5.26387 kcal/mol@LB@Unfolding Energy - sRNA 8.16826 kcal/mol@LB@@LB@Position - mRNA 99 -- 122@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 12 -- 18@LB@ |
124 |
0.0136 |
0.3575 |
b4065 |
yjcE |
-10.85 |
0.188871 |
258 -- 289 |
125 -- 174 |
putative cation/proton antiporter |
|
_____________257___________290\n_____________|_____________|\n5'-UAU...UGGUC_____U_______CCUUU...UGC-3'\n______________ACUCG_GUCAUGC\n______________||||:_||||::|\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________175___________124\n |
267 -- 273 |
168 -- 174 |
-13.2629 kcal/mol |
3.88311 kcal/mol |
0.283892 kcal/mol |
257 290@LB@ | |@LB@5'-UAU...UGGUC U CCUUU...UGC-3'@LB@ ACUCG GUCAUGC@LB@ ||||: ||||::|@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 175 124@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -13.2629 kcal/mol@LB@Unfolding Energy - mRNA 3.88311 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 258 -- 289@LB@Position - sRNA 125 -- 174@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 168 -- 174@LB@ |
125 |
0.01377 |
0.3575 |
b2827 |
thyA |
-14.98 |
0.027366 |
100 -- 109 |
16 -- 25 |
thymidylate synthetase |
|
_____________99_____________________110\n_____________|______________________|\n5'-CAG...AAACA________A_____________AAAAG...AGA-3'\n______________GUAUUUAG__AC___UGAUGCA\n______________:||:|:||__||___|||||||\n______________UAUGAGUC__UG___ACUACGU\n3'-UUU...GUGGU________AG__UGU_______CCGUU...UAG-5'\n_____________|______________________|\n_____________26_____________________15\n |
220 -- 226 |
160 -- 166 |
-15.3976 kcal/mol |
3.04146 kcal/mol |
4.80633 kcal/mol |
99 110@LB@ | |@LB@5'-CAG...AAACA A AAAAG...AGA-3'@LB@ GUAUUUAG AC UGAUGCA@LB@ :||:|:|| || |||||||@LB@ UAUGAGUC UG ACUACGU@LB@3'-UUU...GUGGU AG UGU CCGUU...UAG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -15.3976 kcal/mol@LB@Unfolding Energy - mRNA 3.04146 kcal/mol@LB@Unfolding Energy - sRNA 4.80633 kcal/mol@LB@@LB@Position - mRNA 100 -- 109@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 160 -- 166@LB@ |
126 |
0.01383 |
0.3575 |
b1843 |
yobB |
-8.48 |
0.503741 |
101 -- 118 |
168 -- 185 |
C-N hydrolase family protein |
|
_____________100____________119\n_____________|______________|\n5'-CCU...AACUU____AG________UUUCU...CCA-3'\n______________AUAC__AGUUACAC\n______________||||__|||:||||\n______________UAUG__UCAGUGUG\n3'-UUU...GUGGU____AG________UACUA...UAG-5'\n_____________|______________|\n_____________186____________167\n |
112 -- 118 |
168 -- 174 |
-13.9608 kcal/mol |
3.09724 kcal/mol |
0.286881 kcal/mol |
100 119@LB@ | |@LB@5'-CCU...AACUU AG UUUCU...CCA-3'@LB@ AUAC AGUUACAC@LB@ |||| |||:||||@LB@ UAUG UCAGUGUG@LB@3'-UUU...GUGGU AG UACUA...UAG-5'@LB@ | |@LB@ 186 167@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -13.9608 kcal/mol@LB@Unfolding Energy - mRNA 3.09724 kcal/mol@LB@Unfolding Energy - sRNA 0.286881 kcal/mol@LB@@LB@Position - mRNA 101 -- 118@LB@Position - sRNA 168 -- 185@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 168 -- 174@LB@ |
127 |
0.01385 |
0.3575 |
b3832 |
rmuC |
-11.83 |
0.120260 |
236 -- 246 |
193 -- 203 |
DNA recombination protein |
|
_____________235____________________________________________________________247\n_____________|______________________________________________________________|\n5'-AAA...UUGUA________AUUC___UUU_____________GUU__G______AGGC_______AUU_____AUCAU...AGC-3'\n______________CAG_CACA____UAU___GUGCGGGUAAGUU___GC__UCAGG____GUUGUGG___UCUCA\n______________|||_||||____:||___:|||:||:||||:___:|__||||:____:|||:||___||:||\n______________GUC_GUGU____GUA___UACGUCCGUUCAG___UG__AGUCU____UAACGCC___AGGGU\n3'-UUU...UAUGA___A___________C_______________U____AA________________AGU_____GACGU...UAG-5'\n_____________|______________________________________________________________|\n_____________204____________________________________________________________192\n |
198 -- 204 |
135 -- 141 |
-42.9883 kcal/mol |
19.1075 kcal/mol |
15.6146 kcal/mol |
235 247@LB@ | |@LB@5'-AAA...UUGUA AUUC UUU GUU G AGGC AUU AUCAU...AGC-3'@LB@ CAG CACA UAU GUGCGGGUAAGUU GC UCAGG GUUGUGG UCUCA@LB@ ||| |||| :|| :|||:||:||||: :| ||||: :|||:|| ||:||@LB@ GUC GUGU GUA UACGUCCGUUCAG UG AGUCU UAACGCC AGGGU@LB@3'-UUU...UAUGA A C U AA AGU GACGU...UAG-5'@LB@ | |@LB@ 204 192@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -42.9883 kcal/mol@LB@Unfolding Energy - mRNA 19.1075 kcal/mol@LB@Unfolding Energy - sRNA 15.6146 kcal/mol@LB@@LB@Position - mRNA 236 -- 246@LB@Position - sRNA 193 -- 203@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 135 -- 141@LB@ |
128 |
0.01397 |
0.3575 |
b2440 |
eutC |
-11.59 |
0.134682 |
23 -- 48 |
126 -- 153 |
ethanolamine ammonia-lyase small subunit (light chain) |
|
_____________22______________________________49\n_____________|_______________________________|\n______5'-CCGCU_______G_______________AC______GACCA...ACU-3'\n______________GGGUGAU___ACAUC_AUGCUCA__UAC_CA\n______________|||||||___|||:|_||:||||__:||_||\n______________CCCACUA___UGUGG_UAUGAGU__GUG_GU\n3'-UUU...GACCG_______AAA_____U_______CA___U__ACUAC...UAG-5'\n_____________|_______________________________|\n_____________154_____________________________125\n |
19 -- 25 |
175 -- 181 |
-25.4577 kcal/mol |
6.00586 kcal/mol |
5.22711 kcal/mol |
22 49@LB@ | |@LB@ 5'-CCGCU G AC GACCA...ACU-3'@LB@ GGGUGAU ACAUC AUGCUCA UAC CA@LB@ ||||||| |||:| ||:|||| :|| ||@LB@ CCCACUA UGUGG UAUGAGU GUG GU@LB@3'-UUU...GACCG AAA U CA U ACUAC...UAG-5'@LB@ | |@LB@ 154 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -25.4577 kcal/mol@LB@Unfolding Energy - mRNA 6.00586 kcal/mol@LB@Unfolding Energy - sRNA 5.22711 kcal/mol@LB@@LB@Position - mRNA 23 -- 48@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 175 -- 181@LB@ |
129 |
0.01414 |
0.3575 |
b3579 |
yiaO |
-11.03 |
0.174508 |
249 -- 273 |
50 -- 76 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________248_________________________274\n_____________|___________________________|\n5'-ACU...CGUCC____________C__UA__________UUGUU...AAA-3'\n______________UGGUUUUAUAUU_AU__UUAGUCGUAU\n______________||:|||||:|::_||__|:||||::|:\n______________ACUAAAAUGUGG_UA__AGUCAGUGUG\n3'-UUU...CGCCC____________U__UG__________UACUA...UAG-5'\n_____________|___________________________|\n_____________77__________________________49\n |
132 -- 138 |
168 -- 174 |
-19.0823 kcal/mol |
5.4875 kcal/mol |
5.03533 kcal/mol |
248 274@LB@ | |@LB@5'-ACU...CGUCC C UA UUGUU...AAA-3'@LB@ UGGUUUUAUAUU AU UUAGUCGUAU@LB@ ||:|||||:|:: || |:||||::|:@LB@ ACUAAAAUGUGG UA AGUCAGUGUG@LB@3'-UUU...CGCCC U UG UACUA...UAG-5'@LB@ | |@LB@ 77 49@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -19.0823 kcal/mol@LB@Unfolding Energy - mRNA 5.4875 kcal/mol@LB@Unfolding Energy - sRNA 5.03533 kcal/mol@LB@@LB@Position - mRNA 249 -- 273@LB@Position - sRNA 50 -- 76@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 168 -- 174@LB@ |
130 |
0.0142 |
0.3575 |
b0885 |
aat |
-14.04 |
0.042507 |
189 -- 220 |
112 -- 144 |
leucyl/phenylalanyl-tRNA-protein transferase |
|
_____________188_______________________________221\n_____________|_________________________________|\n5'-CGU...UUUUG________________CU_______________UCGCC...UUA-3'\n______________CGGUCAUGC_____GC__GGU___UCAGCUUUC\n______________|:||||::|_____||__||:___|||:|||||\n______________GUCAGUGUG_____CG__CCG___AGUUGAAAG\n3'-UUU...UAUGA_________UACUA__U____UUC_________UCUUA...UAG-5'\n_____________|_________________________________|\n_____________145_______________________________111\n |
214 -- 220 |
145 -- 151 |
-24.916 kcal/mol |
8.31603 kcal/mol |
8.21863 kcal/mol |
188 221@LB@ | |@LB@5'-CGU...UUUUG CU UCGCC...UUA-3'@LB@ CGGUCAUGC GC GGU UCAGCUUUC@LB@ |:||||::| || ||: |||:|||||@LB@ GUCAGUGUG CG CCG AGUUGAAAG@LB@3'-UUU...UAUGA UACUA U UUC UCUUA...UAG-5'@LB@ | |@LB@ 145 111@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -24.916 kcal/mol@LB@Unfolding Energy - mRNA 8.31603 kcal/mol@LB@Unfolding Energy - sRNA 8.21863 kcal/mol@LB@@LB@Position - mRNA 189 -- 220@LB@Position - sRNA 112 -- 144@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 145 -- 151@LB@ |
131 |
0.01426 |
0.3575 |
b0048 |
folA |
-12.08 |
0.107221 |
135 -- 211 |
115 -- 187 |
dihydrofolate reductase |
|
_____________134_________212\n_____________|___________|\n5'-UCA...UUGUU___________GUAAU...GCA-3'\n______________UUUGUUUCAUU\n______________:|||:|||||:\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________188________115\n |
56 -- 62 |
1 -- 7 |
-10.5455 kcal/mol |
1.7602 kcal/mol |
1.03329 kcal/mol |
134 212@LB@ | |@LB@5'-UCA...UUGUU GUAAU...GCA-3'@LB@ UUUGUUUCAUU@LB@ :|||:|||||:@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 188 115@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.7602 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 135 -- 211@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 1 -- 7@LB@ |
132 |
0.0143 |
0.3575 |
b0147 |
ligT |
-9.89 |
0.288456 |
69 -- 117 |
16 -- 69 |
2'-5' RNA ligase |
|
_____________68__________________________________118\n_____________|___________________________________|\n5'-CCA...AAGUA______GUA_G___GCAGCAA_______C_A____ACAAA...CGG-3'\n______________AUUCAG___A_ACG_______CGGGCAA_G_CGAC\n______________|:||||___|_||:_______|:|||||_|_|:||\n______________UGAGUC___U_UGU_______GUCCGUU_C_GUUG\n3'-UUU...GGUUA______AG__G___ACUAC___________A____AAAGU...UAG-5'\n_____________|___________________________________|\n_____________70__________________________________15\n |
112 -- 118 |
155 -- 161 |
-21.4956 kcal/mol |
4.52534 kcal/mol |
8.18567 kcal/mol |
68 118@LB@ | |@LB@5'-CCA...AAGUA GUA G GCAGCAA C A ACAAA...CGG-3'@LB@ AUUCAG A ACG CGGGCAA G CGAC@LB@ |:|||| | ||: |:||||| | |:||@LB@ UGAGUC U UGU GUCCGUU C GUUG@LB@3'-UUU...GGUUA AG G ACUAC A AAAGU...UAG-5'@LB@ | |@LB@ 70 15@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -21.4956 kcal/mol@LB@Unfolding Energy - mRNA 4.52534 kcal/mol@LB@Unfolding Energy - sRNA 8.18567 kcal/mol@LB@@LB@Position - mRNA 69 -- 117@LB@Position - sRNA 16 -- 69@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 155 -- 161@LB@ |
133 |
0.01432 |
0.3575 |
b2342 |
fadI |
-11.00 |
0.176527 |
78 -- 109 |
125 -- 153 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________77________________________________110\n_____________|_________________________________|\n5'-UCC...UCUCU__UU_____CUCUC________UAGC_______UUCCC...AUG-3'\n______________UC__CUUUU_____UGU_GUCA____UCCCACU\n______________||__||||:_____||:_||||____|||||||\n______________AG__GAAAG_____ACG_CAGU____AGGGUGA\n3'-UUU...CGUUC__UU_____UCUUA___C_______________CGUAG...UAG-5'\n_____________|_________________________________|\n_____________154_______________________________124\n |
103 -- 109 |
125 -- 131 |
-19.0317 kcal/mol |
1.6674 kcal/mol |
9.91012 kcal/mol |
77 110@LB@ | |@LB@5'-UCC...UCUCU UU CUCUC UAGC UUCCC...AUG-3'@LB@ UC CUUUU UGU GUCA UCCCACU@LB@ || ||||: ||: |||| |||||||@LB@ AG GAAAG ACG CAGU AGGGUGA@LB@3'-UUU...CGUUC UU UCUUA C CGUAG...UAG-5'@LB@ | |@LB@ 154 124@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0317 kcal/mol@LB@Unfolding Energy - mRNA 1.6674 kcal/mol@LB@Unfolding Energy - sRNA 9.91012 kcal/mol@LB@@LB@Position - mRNA 78 -- 109@LB@Position - sRNA 125 -- 153@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 125 -- 131@LB@ |
134 |
0.01437 |
0.3575 |
b1798 |
leuE |
-11.20 |
0.161096 |
19 -- 44 |
168 -- 191 |
leucine efflux protein |
|
_____________18_________________________45\n_____________|__________________________|\n5'-UGC...AGAAU________________UGCCGA____UACCC...AAA-3'\n______________UUUUACGCCAGUAUUU______GCAC\n______________||||||:|||:||:|:______:|||\n______________AAAAUGUGGUUAUGAG______UGUG\n3'-UUU...CCACU________________UCAG______UACUA...UAG-5'\n_____________|__________________________|\n_____________192________________________167\n |
26 -- 32 |
178 -- 184 |
-22.4094 kcal/mol |
4.02149 kcal/mol |
4.92826 kcal/mol |
18 45@LB@ | |@LB@5'-UGC...AGAAU UGCCGA UACCC...AAA-3'@LB@ UUUUACGCCAGUAUUU GCAC@LB@ ||||||:|||:||:|: :|||@LB@ AAAAUGUGGUUAUGAG UGUG@LB@3'-UUU...CCACU UCAG UACUA...UAG-5'@LB@ | |@LB@ 192 167@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -22.4094 kcal/mol@LB@Unfolding Energy - mRNA 4.02149 kcal/mol@LB@Unfolding Energy - sRNA 4.92826 kcal/mol@LB@@LB@Position - mRNA 19 -- 44@LB@Position - sRNA 168 -- 191@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 178 -- 184@LB@ |
135 |
0.01453 |
0.3575 |
b2934 |
cmtB |
-15.85 |
0.018111 |
229 -- 275 |
145 -- 186 |
putative mannitol-specific enzyme IIA component of PTS |
|
_____________228___________________276\n_____________|_____________________|\n5'-AUA...AGAAU_____________________UCAGC...UGG-3'\n______________CAUCAAU_CUCAGUUAUACAU\n______________||:||||_||||||:|:||||\n______________GUGGUUA_GAGUCAGUGUGUA\n3'-UUU...AAAAU_______U_____________CUACG...UAG-5'\n_____________|_____________________|\n_____________187___________________144\n |
242 -- 248 |
166 -- 172 |
-24.8158 kcal/mol |
1.5387 kcal/mol |
5.06797 kcal/mol |
228 276@LB@ | |@LB@5'-AUA...AGAAU UCAGC...UGG-3'@LB@ CAUCAAU CUCAGUUAUACAU@LB@ ||:|||| ||||||:|:||||@LB@ GUGGUUA GAGUCAGUGUGUA@LB@3'-UUU...AAAAU U CUACG...UAG-5'@LB@ | |@LB@ 187 144@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -24.8158 kcal/mol@LB@Unfolding Energy - mRNA 1.5387 kcal/mol@LB@Unfolding Energy - sRNA 5.06797 kcal/mol@LB@@LB@Position - mRNA 229 -- 275@LB@Position - sRNA 145 -- 186@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 166 -- 172@LB@ |
136 |
0.01456 |
0.3575 |
b0369 |
hemB |
-9.31 |
0.367566 |
203 -- 221 |
75 -- 90 |
5-aminolevulinate dehydratase (porphobilinogen synthase) |
|
_____________202________________222\n_____________|__________________|\n5'-CCA...UAAAA_______ACCC_______GGUAU...UGC-3'\n______________CAUCCCU____UGCUUCA\n______________||:|||:____|||||||\n______________GUGGGGG____ACGAAGU\n3'-UUU...ACCCC_______A__________AG-5'\n_____________|__________________|\n_____________91_________________74\n |
153 -- 159 |
3 -- 9 |
-17.8942 kcal/mol |
1.92924 kcal/mol |
7.09151 kcal/mol |
202 222@LB@ | |@LB@5'-CCA...UAAAA ACCC GGUAU...UGC-3'@LB@ CAUCCCU UGCUUCA@LB@ ||:|||: |||||||@LB@ GUGGGGG ACGAAGU@LB@3'-UUU...ACCCC A AG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -17.8942 kcal/mol@LB@Unfolding Energy - mRNA 1.92924 kcal/mol@LB@Unfolding Energy - sRNA 7.09151 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 3 -- 9@LB@ |
137 |
0.01486 |
0.3575 |
b3967 |
murI |
-16.98 |
0.010727 |
107 -- 167 |
42 -- 96 |
glutamate racemase |
|
_____________106__________________________168\n_____________|____________________________|\n5'-GUU...GACUG________ACU_____________G___UCGCU...GGU-3'\n______________GGGU_AUU___UAUCAGUAUUUAG_CAC\n______________||||_|||___:|:||:||:|:||_|||\n______________CCCA_UAA___GUGGUUAUGAGUC_GUG\n3'-UUU...GACCG____C___AAU_____________A___UGUAC...UAG-5'\n_____________|____________________________|\n_____________97___________________________41\n |
35 -- 41 |
174 -- 180 |
-22.1424 kcal/mol |
5.45848 kcal/mol |
5.03792 kcal/mol |
106 168@LB@ | |@LB@5'-GUU...GACUG ACU G UCGCU...GGU-3'@LB@ GGGU AUU UAUCAGUAUUUAG CAC@LB@ |||| ||| :|:||:||:|:|| |||@LB@ CCCA UAA GUGGUUAUGAGUC GUG@LB@3'-UUU...GACCG C AAU A UGUAC...UAG-5'@LB@ | |@LB@ 97 41@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -22.1424 kcal/mol@LB@Unfolding Energy - mRNA 5.45848 kcal/mol@LB@Unfolding Energy - sRNA 5.03792 kcal/mol@LB@@LB@Position - mRNA 107 -- 167@LB@Position - sRNA 42 -- 96@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 174 -- 180@LB@ |
138 |
0.01487 |
0.3575 |
b3771 |
ilvD |
-15.83 |
0.018324 |
35 -- 66 |
67 -- 98 |
dihydroxyacid dehydratase |
|
_____________34______67\n_____________|_______|\n5'-GCG...AAAAA_______GCACG...GUA-3'\n______________UGGGACG\n______________|||||||\n______________ACCCUGC\n3'-UUU...GCAAC_______GAAUU...UAG-5'\n_____________|_______|\n_____________99______66\n |
147 -- 153 |
87 -- 93 |
-12.7493 kcal/mol |
2.26202 kcal/mol |
4.21173 kcal/mol |
34 67@LB@ | |@LB@5'-GCG...AAAAA GCACG...GUA-3'@LB@ UGGGACG@LB@ |||||||@LB@ ACCCUGC@LB@3'-UUU...GCAAC GAAUU...UAG-5'@LB@ | |@LB@ 99 66@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -12.7493 kcal/mol@LB@Unfolding Energy - mRNA 2.26202 kcal/mol@LB@Unfolding Energy - sRNA 4.21173 kcal/mol@LB@@LB@Position - mRNA 35 -- 66@LB@Position - sRNA 67 -- 98@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 87 -- 93@LB@ |
139 |
0.01488 |
0.3575 |
b2167 |
fruA |
-12.05 |
0.108648 |
223 -- 242 |
167 -- 187 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________222___________________243\n_____________|_____________________|\n5'-CGC...UAUUG_________________G___CGCGC...AAA-3'\n______________ACGCUAAU_CUCGGUCA_GCA\n______________||:|:|||_|||:||||_:||\n______________UGUGGUUA_GAGUCAGU_UGU\n3'-UUU...UAAAA________U________G___ACUAC...UAG-5'\n_____________|_____________________|\n_____________188___________________166\n |
232 -- 238 |
171 -- 177 |
-25.758 kcal/mol |
6.7352 kcal/mol |
5.05492 kcal/mol |
222 243@LB@ | |@LB@5'-CGC...UAUUG G CGCGC...AAA-3'@LB@ ACGCUAAU CUCGGUCA GCA@LB@ ||:|:||| |||:|||| :||@LB@ UGUGGUUA GAGUCAGU UGU@LB@3'-UUU...UAAAA U G ACUAC...UAG-5'@LB@ | |@LB@ 188 166@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -25.758 kcal/mol@LB@Unfolding Energy - mRNA 6.7352 kcal/mol@LB@Unfolding Energy - sRNA 5.05492 kcal/mol@LB@@LB@Position - mRNA 223 -- 242@LB@Position - sRNA 167 -- 187@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 171 -- 177@LB@ |
140 |
0.01495 |
0.3575 |
b2415 |
ptsH |
-9.89 |
0.288161 |
112 -- 122 |
24 -- 34 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
|
_____________111____________123\n_____________|______________|\n5'-UUG...CAAUA_____UA_______ACCGC...UUA-3'\n______________CAGGC__AAGUCGA\n______________|||||__|||||:|\n______________GUCCG__UUCAGUU\n3'-UUU...ACUAC______________GAAAG...UAG-5'\n_____________|______________|\n_____________35_____________23\n |
138 -- 144 |
150 -- 156 |
-14.4294 kcal/mol |
3.35524 kcal/mol |
6.54796 kcal/mol |
111 123@LB@ | |@LB@5'-UUG...CAAUA UA ACCGC...UUA-3'@LB@ CAGGC AAGUCGA@LB@ ||||| |||||:|@LB@ GUCCG UUCAGUU@LB@3'-UUU...ACUAC GAAAG...UAG-5'@LB@ | |@LB@ 35 23@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -14.4294 kcal/mol@LB@Unfolding Energy - mRNA 3.35524 kcal/mol@LB@Unfolding Energy - sRNA 6.54796 kcal/mol@LB@@LB@Position - mRNA 112 -- 122@LB@Position - sRNA 24 -- 34@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 150 -- 156@LB@ |
141 |
0.01524 |
0.3575 |
b0133 |
panC |
-11.57 |
0.136229 |
4 -- 24 |
142 -- 162 |
pantothenate synthetase |
|
_____________3_________25\n_____________|_________|\n5'-GGC...ACCGG_________UCCUA...UGC-3'\n______________CGGUCACAU\n______________|:||||||:\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________163_______141\n |
65 -- 71 |
168 -- 174 |
-12.1402 kcal/mol |
2.67616 kcal/mol |
0.276974 kcal/mol |
3 25@LB@ | |@LB@5'-GGC...ACCGG UCCUA...UGC-3'@LB@ CGGUCACAU@LB@ |:||||||:@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 163 141@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -12.1402 kcal/mol@LB@Unfolding Energy - mRNA 2.67616 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 142 -- 162@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 168 -- 174@LB@ |
142 |
0.01524 |
0.3575 |
b0611 |
rna |
-12.80 |
0.076457 |
138 -- 176 |
173 -- 202 |
ribonuclease I |
|
_____________137_____________________________________177\n_____________|_______________________________________|\n5'-UAC...CCCAC________CUUUUUUA______A___GA___________GUAUG...AUU-3'\n______________CUGGCGGG________UGAUUU_AUA__UAGUAUUCAGU\n______________||||||||________||||||_|:|__:|:||:|||||\n______________GACCGCCC________ACUAAA_UGU__GUUAUGAGUCA\n3'-UUU...UAGAC______________________A___G____________GUGUG...UAG-5'\n_____________|_______________________________________|\n_____________203_____________________________________172\n |
170 -- 176 |
173 -- 179 |
-31.7889 kcal/mol |
9.30484 kcal/mol |
14.6886 kcal/mol |
137 177@LB@ | |@LB@5'-UAC...CCCAC CUUUUUUA A GA GUAUG...AUU-3'@LB@ CUGGCGGG UGAUUU AUA UAGUAUUCAGU@LB@ |||||||| |||||| |:| :|:||:|||||@LB@ GACCGCCC ACUAAA UGU GUUAUGAGUCA@LB@3'-UUU...UAGAC A G GUGUG...UAG-5'@LB@ | |@LB@ 203 172@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -31.7889 kcal/mol@LB@Unfolding Energy - mRNA 9.30484 kcal/mol@LB@Unfolding Energy - sRNA 14.6886 kcal/mol@LB@@LB@Position - mRNA 138 -- 176@LB@Position - sRNA 173 -- 202@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 173 -- 179@LB@ |
143 |
0.01531 |
0.3575 |
b1641 |
slyB |
-10.83 |
0.190300 |
158 -- 167 |
83 -- 92 |
outer membrane lipoprotein |
|
_____________157____________________________168\n_____________|______________________________|\n5'-CCG...UCACA_______U______UGAC____AGG_____UUGCG...AAG-3'\n______________UAUGCCA_AUACUU____CAUG___GAUGC\n______________||::|||_|||||:____||::___|||||\n______________AUGUGGU_UAUGAG____GUGU___CUACG\n3'-UUU...CUAAA______________UCA_____GUA_____UCCGU...UAG-5'\n_____________|______________________________|\n_____________93_____________________________82\n |
135 -- 141 |
182 -- 188 |
-20.8318 kcal/mol |
7.22081 kcal/mol |
7.72227 kcal/mol |
157 168@LB@ | |@LB@5'-CCG...UCACA U UGAC AGG UUGCG...AAG-3'@LB@ UAUGCCA AUACUU CAUG GAUGC@LB@ ||::||| |||||: ||:: |||||@LB@ AUGUGGU UAUGAG GUGU CUACG@LB@3'-UUU...CUAAA UCA GUA UCCGU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -20.8318 kcal/mol@LB@Unfolding Energy - mRNA 7.22081 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 158 -- 167@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 182 -- 188@LB@ |
144 |
0.01541 |
0.3575 |
b4555 |
yicS |
-14.57 |
0.033136 |
213 -- 290 |
115 -- 187 |
putative periplasmic protein |
|
_____________212_________________________________________________________________291\n_____________|___________________________________________________________________|\n5'-AUU...CAACG______C______UUU____UUUUUUC__U_____C______UCGUAUACGCCG_____C_______CUCAC...AGA-3'\n______________ACACUA_UGCUUA___UCAC_______GC___AUG_CAGGCA____________AGUCG_CUUUUAG\n______________||||:|_|:||:|___||||_______:|___|||_||||||____________||||:_||||:||\n______________UGUGGU_AUGAGU___AGUG_______UG___UAC_GUCCGU____________UCAGU_GAAAGUC\n3'-UUU...UAAAA______U______C_______________UAC___________________________U_______UUAAC...UAG-5'\n_____________|___________________________________________________________________|\n_____________188_________________________________________________________________114\n |
271 -- 277 |
143 -- 149 |
-34.4495 kcal/mol |
11.6435 kcal/mol |
13.2932 kcal/mol |
212 291@LB@ | |@LB@5'-AUU...CAACG C UUU UUUUUUC U C UCGUAUACGCCG C CUCAC...AGA-3'@LB@ ACACUA UGCUUA UCAC GC AUG CAGGCA AGUCG CUUUUAG@LB@ ||||:| |:||:| |||| :| ||| |||||| ||||: ||||:||@LB@ UGUGGU AUGAGU AGUG UG UAC GUCCGU UCAGU GAAAGUC@LB@3'-UUU...UAAAA U C UAC U UUAAC...UAG-5'@LB@ | |@LB@ 188 114@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -34.4495 kcal/mol@LB@Unfolding Energy - mRNA 11.6435 kcal/mol@LB@Unfolding Energy - sRNA 13.2932 kcal/mol@LB@@LB@Position - mRNA 213 -- 290@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 143 -- 149@LB@ |
145 |
0.01541 |
0.3575 |
b1191 |
cvrA |
-14.91 |
0.028165 |
61 -- 91 |
128 -- 160 |
putative cation/proton antiporter |
|
_____________60___________________________________92\n_____________|____________________________________|\n5'-UGA...CGGGA_____CUC_______GA___________________GUUCU...CUA-3'\n______________AGGCA___AGUUGAC__UUA_____GCGGUCAUCCU\n______________|||||___|||::||__|:|_____||||||||||:\n______________UCCGU___UCAGUUG__AGU_____CGCCAGUAGGG\n3'-UUU...CUACG_______________AA___CUUAA___________UGACG...UAG-5'\n_____________|____________________________________|\n_____________161__________________________________127\n |
85 -- 91 |
128 -- 134 |
-32.547 kcal/mol |
9.03914 kcal/mol |
12.2557 kcal/mol |
60 92@LB@ | |@LB@5'-UGA...CGGGA CUC GA GUUCU...CUA-3'@LB@ AGGCA AGUUGAC UUA GCGGUCAUCCU@LB@ ||||| |||::|| |:| ||||||||||:@LB@ UCCGU UCAGUUG AGU CGCCAGUAGGG@LB@3'-UUU...CUACG AA CUUAA UGACG...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -32.547 kcal/mol@LB@Unfolding Energy - mRNA 9.03914 kcal/mol@LB@Unfolding Energy - sRNA 12.2557 kcal/mol@LB@@LB@Position - mRNA 61 -- 91@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 128 -- 134@LB@ |
146 |
0.01559 |
0.358 |
b4394 |
yjjX |
-8.60 |
0.483218 |
101 -- 114 |
123 -- 137 |
non-canonical purine NTP phosphatase ITPase/XTPase |
|
_____________100__________________________________115\n_____________|____________________________________|\n5'-UGC...AAUCC______A______________UC________UU___CGAGA...CAU-3'\n______________CGCUAA_AUUCAG__GC_CAU__UGCAGGCA__UCA\n______________|:|:||_|:||||__:|_|||__||||||||__|||\n______________GUGGUU_UGAGUC__UG_GUA__ACGUCCGU__AGU\n3'-UUU...AAAAU______A______AG__U___CU________UC___UGAAA...UAG-5'\n_____________|____________________________________|\n_____________138__________________________________122\n |
254 -- 260 |
156 -- 162 |
-32.2061 kcal/mol |
8.98762 kcal/mol |
12.5635 kcal/mol |
100 115@LB@ | |@LB@5'-UGC...AAUCC A UC UU CGAGA...CAU-3'@LB@ CGCUAA AUUCAG GC CAU UGCAGGCA UCA@LB@ |:|:|| |:|||| :| ||| |||||||| |||@LB@ GUGGUU UGAGUC UG GUA ACGUCCGU AGU@LB@3'-UUU...AAAAU A AG U CU UC UGAAA...UAG-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -32.2061 kcal/mol@LB@Unfolding Energy - mRNA 8.98762 kcal/mol@LB@Unfolding Energy - sRNA 12.5635 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 156 -- 162@LB@ |
147 |
0.01564 |
0.358 |
b3153 |
yhbO |
-15.63 |
0.020103 |
154 -- 186 |
72 -- 98 |
stress-resistance protein |
|
_____________153_______________________________187\n_____________|_________________________________|\n5'-GUU...AUCCC__A________AAUU___CUCAU__________AACGC...UUA-3'\n______________CG_UUGUGGGA____CGC_____CCAAUGCAAC\n______________||_||||||||____|||_____||||:|||||\n______________GC_AACACCCU____GCG_____GGUUGCGUUG\n3'-UUU...AAUUA__________________AAUU___________GUCGU...UAG-5'\n_____________|_________________________________|\n_____________99________________________________71\n |
180 -- 186 |
72 -- 78 |
-31.4938 kcal/mol |
8.17407 kcal/mol |
13.9341 kcal/mol |
153 187@LB@ | |@LB@5'-GUU...AUCCC A AAUU CUCAU AACGC...UUA-3'@LB@ CG UUGUGGGA CGC CCAAUGCAAC@LB@ || |||||||| ||| ||||:|||||@LB@ GC AACACCCU GCG GGUUGCGUUG@LB@3'-UUU...AAUUA AAUU GUCGU...UAG-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -15.63 kcal/mol@LB@Hybridization Energy -31.4938 kcal/mol@LB@Unfolding Energy - mRNA 8.17407 kcal/mol@LB@Unfolding Energy - sRNA 13.9341 kcal/mol@LB@@LB@Position - mRNA 154 -- 186@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 72 -- 78@LB@ |
148 |
0.01584 |
0.3602 |
b1822 |
rlmA |
-10.68 |
0.203557 |
148 -- 239 |
111 -- 186 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________147___________240\n_____________|_____________|\n5'-AAG...GCGUG_____C_______UUGCG...GGU-3'\n______________AUUCG_GUUACAC\n______________|:||:_||:||||\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________187___________110\n |
163 -- 169 |
168 -- 174 |
-12.5288 kcal/mol |
1.89227 kcal/mol |
0.283892 kcal/mol |
147 240@LB@ | |@LB@5'-AAG...GCGUG C UUGCG...GGU-3'@LB@ AUUCG GUUACAC@LB@ |:||: ||:||||@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 187 110@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -12.5288 kcal/mol@LB@Unfolding Energy - mRNA 1.89227 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 148 -- 239@LB@Position - sRNA 111 -- 186@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 168 -- 174@LB@ |
149 |
0.01599 |
0.3612 |
b3236 |
mdh |
-10.77 |
0.195799 |
223 -- 232 |
196 -- 205 |
malate dehydrogenase NAD(P)-binding |
|
_____________222_____233\n_____________|_______|\n5'-GUU...AUGAA_______GUCCU...AUG-3'\n______________AGUCGCA\n______________||||:||\n______________UCAGUGU\n3'-UUU...AUGAG_______GUACU...UAG-5'\n_____________|_______|\n_____________206_____195\n |
206 -- 212 |
169 -- 175 |
-8.87418 kcal/mol |
1.40028 kcal/mol |
0.26566 kcal/mol |
222 233@LB@ | |@LB@5'-GUU...AUGAA GUCCU...AUG-3'@LB@ AGUCGCA@LB@ ||||:||@LB@ UCAGUGU@LB@3'-UUU...AUGAG GUACU...UAG-5'@LB@ | |@LB@ 206 195@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -8.87418 kcal/mol@LB@Unfolding Energy - mRNA 1.40028 kcal/mol@LB@Unfolding Energy - sRNA 0.26566 kcal/mol@LB@@LB@Position - mRNA 223 -- 232@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 169 -- 175@LB@ |
150 |
0.01679 |
0.3749 |
b3550 |
yiaC |
-14.78 |
0.030008 |
125 -- 180 |
123 -- 174 |
GNAT family putative N-acetyltransferase |
|
_____________124_______________________________________________181\n_____________|_________________________________________________|\n5'-AAU...UCUGU_____CU_______G_C________U___G___GA______________GGCUG...GGC-3'\n______________UACUC__UUAUGCA_G_AUGUGGGC_GGU_AAU__UCA____UGUGGUU\n______________|||||__|:|::||_|_|||::|||_:||_||:__|||____||:|||:\n______________AUGAG__AGUGUGU_C_UACGUCCG_UCA_UUG__AGU____ACGCCAG\n3'-UUU...UGGUU_____UC_______A__________U___G___AA___CUUA_______UAGGG...UAG-5'\n_____________|_________________________________________________|\n_____________175_______________________________________________122\n |
134 -- 140 |
167 -- 173 |
-39.4647 kcal/mol |
14.8163 kcal/mol |
12.8033 kcal/mol |
124 181@LB@ | |@LB@5'-AAU...UCUGU CU G C U G GA GGCUG...GGC-3'@LB@ UACUC UUAUGCA G AUGUGGGC GGU AAU UCA UGUGGUU@LB@ ||||| |:|::|| | |||::||| :|| ||: ||| ||:|||:@LB@ AUGAG AGUGUGU C UACGUCCG UCA UUG AGU ACGCCAG@LB@3'-UUU...UGGUU UC A U G AA CUUA UAGGG...UAG-5'@LB@ | |@LB@ 175 122@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -39.4647 kcal/mol@LB@Unfolding Energy - mRNA 14.8163 kcal/mol@LB@Unfolding Energy - sRNA 12.8033 kcal/mol@LB@@LB@Position - mRNA 125 -- 180@LB@Position - sRNA 123 -- 174@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 167 -- 173@LB@ |
152 |
0.0171 |
0.3749 |
b3605 |
lldD |
-10.23 |
0.248595 |
212 -- 221 |
68 -- 77 |
L-lactate dehydrogenase FMN-linked |
|
_____________211_______222\n_____________|_________|\n5'-UUU...GAAAA_________UAUUU...ACA-3'\n______________ACGCAUGAU\n______________||:||||||\n______________UGUGUACUA\n3'-UUU...GUCAG_________CGUCC...UAG-5'\n_____________|_________|\n_____________78________67\n |
199 -- 205 |
163 -- 169 |
-11.1438 kcal/mol |
1.00002 kcal/mol |
4.14962 kcal/mol |
211 222@LB@ | |@LB@5'-UUU...GAAAA UAUUU...ACA-3'@LB@ ACGCAUGAU@LB@ ||:||||||@LB@ UGUGUACUA@LB@3'-UUU...GUCAG CGUCC...UAG-5'@LB@ | |@LB@ 78 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -11.1438 kcal/mol@LB@Unfolding Energy - mRNA 1.00002 kcal/mol@LB@Unfolding Energy - sRNA 4.14962 kcal/mol@LB@@LB@Position - mRNA 212 -- 221@LB@Position - sRNA 68 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
153 |
0.01719 |
0.3749 |
b2997 |
hybO |
-10.59 |
0.212773 |
44 -- 57 |
176 -- 189 |
hydrogenase 2 small subunit |
|
_____________43_________________58\n_____________|__________________|\n5'-CUC...AUUAA______________CU__CCUUC...GCA-3'\n______________UUACACUAAUGCUU__UC\n______________||||||:|||:||:__||\n______________AAUGUGGUUAUGAG__AG\n3'-UUU...ACUAA______________UC__UGUGU...UAG-5'\n_____________|__________________|\n_____________190________________175\n |
51 -- 57 |
176 -- 182 |
-17.3647 kcal/mol |
0.828093 kcal/mol |
4.66778 kcal/mol |
43 58@LB@ | |@LB@5'-CUC...AUUAA CU CCUUC...GCA-3'@LB@ UUACACUAAUGCUU UC@LB@ ||||||:|||:||: ||@LB@ AAUGUGGUUAUGAG AG@LB@3'-UUU...ACUAA UC UGUGU...UAG-5'@LB@ | |@LB@ 190 175@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -17.3647 kcal/mol@LB@Unfolding Energy - mRNA 0.828093 kcal/mol@LB@Unfolding Energy - sRNA 4.66778 kcal/mol@LB@@LB@Position - mRNA 44 -- 57@LB@Position - sRNA 176 -- 189@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 176 -- 182@LB@ |
154 |
0.01719 |
0.3749 |
b3726 |
pstA |
-9.04 |
0.409183 |
290 -- 297 |
24 -- 31 |
phosphate ABC transporter permease |
|
_____________289____________298\n_____________|______________|\n5'-CAG...CCGUA_________C____U-3'\n______________UUGCGCUGA_GCUC\n______________||:|:|::|_:|||\n______________AAUGUGGUU_UGAG\n3'-UUU...ACUAA_________A____UCAGU...UAG-5'\n_____________|______________|\n_____________32_____________23\n |
288 -- 294 |
181 -- 187 |
-13.2096 kcal/mol |
2.6708 kcal/mol |
3.40409 kcal/mol |
289 298@LB@ | |@LB@5'-CAG...CCGUA C U-3'@LB@ UUGCGCUGA GCUC@LB@ ||:|:|::| :|||@LB@ AAUGUGGUU UGAG@LB@3'-UUU...ACUAA A UCAGU...UAG-5'@LB@ | |@LB@ 32 23@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -13.2096 kcal/mol@LB@Unfolding Energy - mRNA 2.6708 kcal/mol@LB@Unfolding Energy - sRNA 3.40409 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 24 -- 31@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 181 -- 187@LB@ |
155 |
0.01733 |
0.3749 |
b3542 |
dppC |
-14.36 |
0.036537 |
40 -- 62 |
74 -- 93 |
dipeptide/heme ABC transporter permease |
|
_____________39_______________________________________________________63\n_____________|________________________________________________________|\n5'-GGG...UCGUC____U__U___C__________UA___C_____GA_______C_____________AGAAG...UCG-3'\n______________AACU_GC_GGU__GAUCUGCUG__CGG_GUGGU___AC_CCG_GUAUUC_GUCAUA\n______________|||:_||_|||__:||||||||__|||_|||:|___||_||:_:||:||_||||:|\n______________UUGG_CG_CCA__UUAGACGAC__GCC_CACUA___UG_GGU_UAUGAG_CAGUGU\n_____3'-UUUUUU____U__U___UA_________C__________AAA__U__________U______GUACU...UAG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________73\n |
146 -- 152 |
200 -- 206 |
-46.3163 kcal/mol |
15.5571 kcal/mol |
18.3074 kcal/mol |
39 63@LB@ | |@LB@5'-GGG...UCGUC U U C UA C GA C AGAAG...UCG-3'@LB@ AACU GC GGU GAUCUGCUG CGG GUGGU AC CCG GUAUUC GUCAUA@LB@ |||: || ||| :|||||||| ||| |||:| || ||: :||:|| ||||:|@LB@ UUGG CG CCA UUAGACGAC GCC CACUA UG GGU UAUGAG CAGUGU@LB@ 3'-UUUUUU U U UA C AAA U U GUACU...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -46.3163 kcal/mol@LB@Unfolding Energy - mRNA 15.5571 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 40 -- 62@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 200 -- 206@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
157 |
0.01768 |
0.3749 |
b1216 |
chaA |
-11.60 |
0.134178 |
242 -- 292 |
18 -- 65 |
calcium/sodium:proton antiporter |
|
_____________241_______________293\n_____________|_________________|\n5'-AUU...AAUGU_________C___A___UUUCU...GCC-3'\n______________UACCGAUAU_CAG_CAC\n______________:|||:|||:_|||_|||\n______________GUGGUUAUG_GUC_GUG\n3'-UUU...AAAAU_________A___A___UGUAC...UAG-5'\n_____________|_________________|\n_____________66________________17\n |
120 -- 126 |
178 -- 184 |
-16.2011 kcal/mol |
3.68451 kcal/mol |
4.86651 kcal/mol |
241 293@LB@ | |@LB@5'-AUU...AAUGU C A UUUCU...GCC-3'@LB@ UACCGAUAU CAG CAC@LB@ :|||:|||: ||| |||@LB@ GUGGUUAUG GUC GUG@LB@3'-UUU...AAAAU A A UGUAC...UAG-5'@LB@ | |@LB@ 66 17@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.2011 kcal/mol@LB@Unfolding Energy - mRNA 3.68451 kcal/mol@LB@Unfolding Energy - sRNA 4.86651 kcal/mol@LB@@LB@Position - mRNA 242 -- 292@LB@Position - sRNA 18 -- 65@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 178 -- 184@LB@ |
158 |
0.01775 |
0.3749 |
b1187 |
fadR |
-13.89 |
0.045798 |
42 -- 66 |
152 -- 176 |
fatty acid metabolism regulon transcriptional regulator |
|
_____________41________________________67\n_____________|_________________________|\n5'-AAA...CUUAA______G___G__GUG_________UUGAU...CAG-3'\n______________CGGUCA_GCA_GA___AGGCAAGUC\n______________|:||||_:||_||___|||||||||\n______________GUCAGU_UGU_CU___UCCGUUCAG\n3'-UUU...UAUGA______G___A__ACG_________UUGAA...UAG-5'\n_____________|_________________________|\n_____________177_______________________151\n |
60 -- 66 |
152 -- 158 |
-31.5031 kcal/mol |
7.04431 kcal/mol |
8.02398 kcal/mol |
41 67@LB@ | |@LB@5'-AAA...CUUAA G G GUG UUGAU...CAG-3'@LB@ CGGUCA GCA GA AGGCAAGUC@LB@ |:|||| :|| || |||||||||@LB@ GUCAGU UGU CU UCCGUUCAG@LB@3'-UUU...UAUGA G A ACG UUGAA...UAG-5'@LB@ | |@LB@ 177 151@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -31.5031 kcal/mol@LB@Unfolding Energy - mRNA 7.04431 kcal/mol@LB@Unfolding Energy - sRNA 8.02398 kcal/mol@LB@@LB@Position - mRNA 42 -- 66@LB@Position - sRNA 152 -- 176@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 152 -- 158@LB@ |
159 |
0.01779 |
0.3749 |
b2504 |
yfgG |
-11.18 |
0.162405 |
230 -- 250 |
168 -- 187 |
uncharacterized protein |
|
_____________229___________________251\n_____________|_____________________|\n5'-CCU...AAACG________UUAA_________GACCC...UUA-3'\n______________ACACCGAU____CAGUCGCAU\n______________|||||:||____|||||:||:\n______________UGUGGUUA____GUCAGUGUG\n3'-UUU...UAAAA________UGA__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
244 -- 250 |
168 -- 174 |
-22.7597 kcal/mol |
5.28018 kcal/mol |
4.88067 kcal/mol |
229 251@LB@ | |@LB@5'-CCU...AAACG UUAA GACCC...UUA-3'@LB@ ACACCGAU CAGUCGCAU@LB@ |||||:|| |||||:||:@LB@ UGUGGUUA GUCAGUGUG@LB@3'-UUU...UAAAA UGA UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -11.18 kcal/mol@LB@Hybridization Energy -22.7597 kcal/mol@LB@Unfolding Energy - mRNA 5.28018 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 168 -- 174@LB@ |
160 |
0.01787 |
0.3749 |
b3935 |
priA |
-8.27 |
0.542824 |
222 -- 250 |
110 -- 140 |
Primosome factor n' (replication factor Y) |
|
_____________221_________________________251\n_____________|___________________________|\n5'-GAA...UAACC______AU___A_____G_________UAUGC...GCG-3'\n______________CACCGA__UUC_AGUCA_G_AUGAUGC\n______________||||:|__:||_|||||_:_|||||||\n______________GUGGUU__GAG_UCAGU_U_UACUACG\n3'-UUU...AAAAU______AU_________G_G_______UCCGU...UAG-5'\n_____________|___________________________|\n_____________141_________________________109\n |
193 -- 199 |
161 -- 167 |
-24.457 kcal/mol |
4.47787 kcal/mol |
7.72013 kcal/mol |
221 251@LB@ | |@LB@5'-GAA...UAACC AU A G UAUGC...GCG-3'@LB@ CACCGA UUC AGUCA G AUGAUGC@LB@ ||||:| :|| ||||| : |||||||@LB@ GUGGUU GAG UCAGU U UACUACG@LB@3'-UUU...AAAAU AU G G UCCGU...UAG-5'@LB@ | |@LB@ 141 109@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -24.457 kcal/mol@LB@Unfolding Energy - mRNA 4.47787 kcal/mol@LB@Unfolding Energy - sRNA 7.72013 kcal/mol@LB@@LB@Position - mRNA 222 -- 250@LB@Position - sRNA 110 -- 140@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 161 -- 167@LB@ |
161 |
0.01797 |
0.3749 |
b1921 |
fliZ |
-13.03 |
0.068461 |
73 -- 137 |
125 -- 204 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________72__________________________________________138\n_____________|___________________________________________|\n5'-UGC...GAGGU_______AU______G___C_G___________GC________UAUUA...AUC-3'\n______________CGGG_GA_____CGC_GGU_A_UCAGUUACACA_____CAGGC\n______________||||_||_____|:|_::|_|_|||||:|||||_____|||||\n______________GCCC_CU_____GUG_UUA_U_AGUCAGUGUGU_____GUCCG\n3'-UUU...CGACC____A__AAAAU___G_____G___________ACUAC_____UUCAG...UAG-5'\n_____________|___________________________________________|\n_____________205_________________________________________124\n |
105 -- 111 |
167 -- 173 |
-36.0631 kcal/mol |
8.93512 kcal/mol |
13.9606 kcal/mol |
72 138@LB@ | |@LB@5'-UGC...GAGGU AU G C G GC UAUUA...AUC-3'@LB@ CGGG GA CGC GGU A UCAGUUACACA CAGGC@LB@ |||| || |:| ::| | |||||:||||| |||||@LB@ GCCC CU GUG UUA U AGUCAGUGUGU GUCCG@LB@3'-UUU...CGACC A AAAAU G G ACUAC UUCAG...UAG-5'@LB@ | |@LB@ 205 124@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -36.0631 kcal/mol@LB@Unfolding Energy - mRNA 8.93512 kcal/mol@LB@Unfolding Energy - sRNA 13.9606 kcal/mol@LB@@LB@Position - mRNA 73 -- 137@LB@Position - sRNA 125 -- 204@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 167 -- 173@LB@ |
162 |
0.01805 |
0.3749 |
b2499 |
purM |
-13.07 |
0.067336 |
182 -- 195 |
13 -- 27 |
phosphoribosylaminoimidazole synthetase |
|
_____________181______196\n_____________|________|\n__________5'-U________AUGGU...CGC-3'\n______________AUAUUCAG\n______________|||:||||\n______________UAUGAGUC\n3'-UUU...GUGGU________AGUGU...UAG-5'\n_____________|________|\n_____________28_______12\n |
3 -- 9 |
174 -- 180 |
-7.89877 kcal/mol |
1.882 kcal/mol |
0.273058 kcal/mol |
181 196@LB@ | |@LB@ 5'-U AUGGU...CGC-3'@LB@ AUAUUCAG@LB@ |||:||||@LB@ UAUGAGUC@LB@3'-UUU...GUGGU AGUGU...UAG-5'@LB@ | |@LB@ 28 12@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -7.89877 kcal/mol@LB@Unfolding Energy - mRNA 1.882 kcal/mol@LB@Unfolding Energy - sRNA 0.273058 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 13 -- 27@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 174 -- 180@LB@ |
163 |
0.01822 |
0.376 |
b1073 |
flgB |
-9.73 |
0.308533 |
172 -- 220 |
24 -- 70 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________171_______221\n_____________|_________|\n5'-UGA...AACAU_________CG-3'\n______________CGCCAAUGC\n______________|:|||||:|\n______________GUGGUUAUG\n3'-UUU...AAAAU_________AGUCA...UAG-5'\n_____________|_________|\n_____________71________23\n |
292 -- 298 |
178 -- 184 |
-11.5881 kcal/mol |
1.63005 kcal/mol |
3.31726 kcal/mol |
171 221@LB@ | |@LB@5'-UGA...AACAU CG-3'@LB@ CGCCAAUGC@LB@ |:|||||:|@LB@ GUGGUUAUG@LB@3'-UUU...AAAAU AGUCA...UAG-5'@LB@ | |@LB@ 71 23@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -11.5881 kcal/mol@LB@Unfolding Energy - mRNA 1.63005 kcal/mol@LB@Unfolding Energy - sRNA 3.31726 kcal/mol@LB@@LB@Position - mRNA 172 -- 220@LB@Position - sRNA 24 -- 70@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 178 -- 184@LB@ |
164 |
0.01856 |
0.3808 |
b0715 |
abrB |
-11.36 |
0.150074 |
79 -- 113 |
125 -- 160 |
regulator of aidB expression; inner membrane protein |
|
_____________78_____________114\n_____________|______________|\n5'-GGC...CGGCG______U_______GCCGA-3'\n______________GCGCUA_UACUUGG\n______________:|:|:|_||||::|\n______________UGUGGU_AUGAGUC\n3'-UUU...UAAAA______U_______AGUGU...UAG-5'\n_____________|______________|\n_____________161____________124\n |
289 -- 295 |
174 -- 180 |
-13.5584 kcal/mol |
1.79119 kcal/mol |
3.6661 kcal/mol |
78 114@LB@ | |@LB@5'-GGC...CGGCG U GCCGA-3'@LB@ GCGCUA UACUUGG@LB@ :|:|:| ||||::|@LB@ UGUGGU AUGAGUC@LB@3'-UUU...UAAAA U AGUGU...UAG-5'@LB@ | |@LB@ 161 124@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -13.5584 kcal/mol@LB@Unfolding Energy - mRNA 1.79119 kcal/mol@LB@Unfolding Energy - sRNA 3.6661 kcal/mol@LB@@LB@Position - mRNA 79 -- 113@LB@Position - sRNA 125 -- 160@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 174 -- 180@LB@ |
165 |
0.01884 |
0.3812 |
b3291 |
mscL |
-11.12 |
0.167422 |
252 -- 267 |
193 -- 208 |
mechanosensitive channel protein high conductance |
|
_____________251_____268\n_____________|_______|\n5'-UGU...UGUCG_______AGGGA...UCU-3'\n______________GCUUCAU\n______________|||||||\n______________CGAAGUA\n3'-UUU...GGGAA_______G-5'\n_____________|_______|\n_____________209_____192\n |
182 -- 188 |
2 -- 8 |
-9.41561 kcal/mol |
2.23742 kcal/mol |
0.70263 kcal/mol |
251 268@LB@ | |@LB@5'-UGU...UGUCG AGGGA...UCU-3'@LB@ GCUUCAU@LB@ |||||||@LB@ CGAAGUA@LB@3'-UUU...GGGAA G-5'@LB@ | |@LB@ 209 192@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -9.41561 kcal/mol@LB@Unfolding Energy - mRNA 2.23742 kcal/mol@LB@Unfolding Energy - sRNA 0.70263 kcal/mol@LB@@LB@Position - mRNA 252 -- 267@LB@Position - sRNA 193 -- 208@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 2 -- 8@LB@ |
166 |
0.01886 |
0.3812 |
b3300 |
secY |
-11.48 |
0.141920 |
168 -- 177 |
196 -- 205 |
preprotein translocase membrane subunit |
|
_____________167_______________178\n_____________|_________________|\n5'-CCU...UCGAA____C_G__________CGAGG...UCC-3'\n______________GCUG_U_GCGGUAAAAU\n______________||||_|_||||||||||\n______________CGAC_A_CGCCAUUUUA\n3'-UUU...UGAAG______G__________UCACG...UAG-5'\n_____________|_________________|\n_____________206_______________195\n |
177 -- 183 |
44 -- 50 |
-20.9884 kcal/mol |
6.84834 kcal/mol |
6.15722 kcal/mol |
167 178@LB@ | |@LB@5'-CCU...UCGAA C G CGAGG...UCC-3'@LB@ GCUG U GCGGUAAAAU@LB@ |||| | ||||||||||@LB@ CGAC A CGCCAUUUUA@LB@3'-UUU...UGAAG G UCACG...UAG-5'@LB@ | |@LB@ 206 195@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.9884 kcal/mol@LB@Unfolding Energy - mRNA 6.84834 kcal/mol@LB@Unfolding Energy - sRNA 6.15722 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 44 -- 50@LB@ |
167 |
0.01932 |
0.3812 |
b2912 |
fau |
-13.57 |
0.053124 |
153 -- 189 |
109 -- 152 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________152__________190\n_____________|____________|\n5'-GAA...UGAGC____________GUCCG...UGG-3'\n______________AUGCUCGGUC_C\n______________||:|||:|||_|\n______________UAUGAGUCAG_G\n3'-UUU...GUGGU__________U_UGUAC...UAG-5'\n_____________|____________|\n_____________153__________108\n |
31 -- 37 |
172 -- 178 |
-13.9133 kcal/mol |
3.57919 kcal/mol |
0.28482 kcal/mol |
152 190@LB@ | |@LB@5'-GAA...UGAGC GUCCG...UGG-3'@LB@ AUGCUCGGUC C@LB@ ||:|||:||| |@LB@ UAUGAGUCAG G@LB@3'-UUU...GUGGU U UGUAC...UAG-5'@LB@ | |@LB@ 153 108@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -13.9133 kcal/mol@LB@Unfolding Energy - mRNA 3.57919 kcal/mol@LB@Unfolding Energy - sRNA 0.28482 kcal/mol@LB@@LB@Position - mRNA 153 -- 189@LB@Position - sRNA 109 -- 152@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 172 -- 178@LB@ |
168 |
0.01937 |
0.3812 |
b4354 |
yjiY |
-11.43 |
0.145336 |
99 -- 125 |
132 -- 159 |
putative transporter |
|
_____________98__________________________________________________126\n_____________|___________________________________________________|\n5'-CUU...UACCU_____UACG_______AACUCU_____CA______A_______A_______AUUUA...ACA-3'\n______________UACUU____CGCGCGU______GGCAA__UC_ACU__CAGGAU_GCGGUCA\n______________||||:____|:|:|:|______|||||__||_|||__|||:||_|||||||\n______________AUGAG____GUGUGUA______CCGUU__AG_UGA__GUCUUA_CGCCAGU\n3'-UUU...UGGUU_____UCA________CUACGU_____C___U___AA______A_______AGGGU...UAG-5'\n_____________|___________________________________________________|\n_____________160_________________________________________________131\n |
119 -- 125 |
132 -- 138 |
-39.8751 kcal/mol |
13.2469 kcal/mol |
12.8104 kcal/mol |
98 126@LB@ | |@LB@5'-CUU...UACCU UACG AACUCU CA A A AUUUA...ACA-3'@LB@ UACUU CGCGCGU GGCAA UC ACU CAGGAU GCGGUCA@LB@ ||||: |:|:|:| ||||| || ||| |||:|| |||||||@LB@ AUGAG GUGUGUA CCGUU AG UGA GUCUUA CGCCAGU@LB@3'-UUU...UGGUU UCA CUACGU C U AA A AGGGU...UAG-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -39.8751 kcal/mol@LB@Unfolding Energy - mRNA 13.2469 kcal/mol@LB@Unfolding Energy - sRNA 12.8104 kcal/mol@LB@@LB@Position - mRNA 99 -- 125@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 132 -- 138@LB@ |
169 |
0.01937 |
0.3812 |
b4557 |
yidD |
-14.07 |
0.041992 |
2 -- 13 |
11 -- 22 |
membrane protein insertion efficiency factor UPF0161 family inner membrane protein |
|
_____________1______________________14\n_____________|______________________|\n__________5'-C____________GUAUCG____UUACA...UCA-3'\n______________UGGGGCAUCCCC_______GUC\n______________|||||||:||||_______:||\n______________ACCCCGUGGGGG_______UAG\n3'-UUU...UGCGU____________AACGAAG___-5'\n_____________|_____________________|\n_____________23____________________11\n |
7 -- 13 |
11 -- 17 |
-28.608 kcal/mol |
8.24927 kcal/mol |
10.7363 kcal/mol |
1 14@LB@ | |@LB@ 5'-C GUAUCG UUACA...UCA-3'@LB@ UGGGGCAUCCCC GUC@LB@ |||||||:|||| :||@LB@ ACCCCGUGGGGG UAG@LB@3'-UUU...UGCGU AACGAAG -5'@LB@ | |@LB@ 23 11@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -28.608 kcal/mol@LB@Unfolding Energy - mRNA 8.24927 kcal/mol@LB@Unfolding Energy - sRNA 10.7363 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 11 -- 22@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 11 -- 17@LB@ |
170 |
0.01941 |
0.3812 |
b3911 |
cpxA |
-13.13 |
0.065341 |
265 -- 299 |
168 -- 204 |
sensory histidine kinase in two-component regulatory system with CpxR |
|
_____________264______300\n_____________|________|\n5'-UAU...GUUUC________GAUAG...GCC-3'\n______________UGCUUCAU\n______________||||||||\n______________ACGAAGUA\n3'-UUU...GGGGA________G-5'\n_____________|________|\n_____________205______167\n |
196 -- 202 |
2 -- 8 |
-10.3801 kcal/mol |
3.0426 kcal/mol |
0.709873 kcal/mol |
264 300@LB@ | |@LB@5'-UAU...GUUUC GAUAG...GCC-3'@LB@ UGCUUCAU@LB@ ||||||||@LB@ ACGAAGUA@LB@3'-UUU...GGGGA G-5'@LB@ | |@LB@ 205 167@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -10.3801 kcal/mol@LB@Unfolding Energy - mRNA 3.0426 kcal/mol@LB@Unfolding Energy - sRNA 0.709873 kcal/mol@LB@@LB@Position - mRNA 265 -- 299@LB@Position - sRNA 168 -- 204@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 2 -- 8@LB@ |
171 |
0.01954 |
0.3812 |
b3687 |
ibpA |
-6.40 |
0.875621 |
11 -- 20 |
10 -- 18 |
heat shock chaperone |
|
_____________10____________21\n_____________|_____________|\n5'-AAC...GCCCC_______U_____AUAGA...GCU-3'\n______________CUCAGUC_AUGCA\n______________|||||||_|::||\n______________GAGUCAG_UGUGU\n3'-UUU...GUUAU_____________ACUAC...UAG-5'\n_____________|_____________|\n_____________19____________9\n |
19 -- 25 |
172 -- 178 |
-14.2159 kcal/mol |
5.36362 kcal/mol |
0.433674 kcal/mol |
10 21@LB@ | |@LB@5'-AAC...GCCCC U AUAGA...GCU-3'@LB@ CUCAGUC AUGCA@LB@ ||||||| |::||@LB@ GAGUCAG UGUGU@LB@3'-UUU...GUUAU ACUAC...UAG-5'@LB@ | |@LB@ 19 9@LB@@LB@@LB@Energy -6.40 kcal/mol@LB@Hybridization Energy -14.2159 kcal/mol@LB@Unfolding Energy - mRNA 5.36362 kcal/mol@LB@Unfolding Energy - sRNA 0.433674 kcal/mol@LB@@LB@Position - mRNA 11 -- 20@LB@Position - sRNA 10 -- 18@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 172 -- 178@LB@ |
172 |
0.01969 |
0.3812 |
b0213 |
yafS |
-9.47 |
0.344290 |
95 -- 113 |
1 -- 19 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________94________114\n_____________|_________|\n5'-UGG...UCAAA_________CUCCU...UCA-3'\n______________CUGUCGUGG\n______________||||||:||\n______________GACAGCGCC\n3'-UUU...GAAGC_________AUUUU...UAG-5'\n_____________|_________|\n_____________20________0\n |
228 -- 234 |
50 -- 56 |
-16.2917 kcal/mol |
2.78861 kcal/mol |
4.02 kcal/mol |
94 114@LB@ | |@LB@5'-UGG...UCAAA CUCCU...UCA-3'@LB@ CUGUCGUGG@LB@ ||||||:||@LB@ GACAGCGCC@LB@3'-UUU...GAAGC AUUUU...UAG-5'@LB@ | |@LB@ 20 0@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -16.2917 kcal/mol@LB@Unfolding Energy - mRNA 2.78861 kcal/mol@LB@Unfolding Energy - sRNA 4.02 kcal/mol@LB@@LB@Position - mRNA 95 -- 113@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 50 -- 56@LB@ |
173 |
0.0197 |
0.3812 |
b3210 |
arcB |
-10.66 |
0.206219 |
214 -- 224 |
197 -- 207 |
aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB |
|
_____________213_________________225\n_____________|___________________|\n5'-UGC...UAACG_____G_____________AUUAU...UUC-3'\n______________UAACU_UCAGAAUUG_GGU\n______________:||||_|||||||||_|||\n______________GUUGA_AGUCUUAAC_CCA\n3'-UUU...GUUCA_____A_________G___GUAGG...UAG-5'\n_____________|___________________|\n_____________208_________________196\n |
156 -- 162 |
138 -- 144 |
-19.5528 kcal/mol |
4.59493 kcal/mol |
5.63708 kcal/mol |
213 225@LB@ | |@LB@5'-UGC...UAACG G AUUAU...UUC-3'@LB@ UAACU UCAGAAUUG GGU@LB@ :|||| ||||||||| |||@LB@ GUUGA AGUCUUAAC CCA@LB@3'-UUU...GUUCA A G GUAGG...UAG-5'@LB@ | |@LB@ 208 196@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -19.5528 kcal/mol@LB@Unfolding Energy - mRNA 4.59493 kcal/mol@LB@Unfolding Energy - sRNA 5.63708 kcal/mol@LB@@LB@Position - mRNA 214 -- 224@LB@Position - sRNA 197 -- 207@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 138 -- 144@LB@ |
174 |
0.01972 |
0.3812 |
b0478 |
ybaL |
-7.90 |
0.612018 |
5 -- 14 |
166 -- 176 |
inner membrane putative NAD(P)-binding transporter |
|
_____________4___________15\n_____________|___________|\n_______5'-UUUA___________AAGCC...UGG-3'\n______________CAGUCGC_CAU\n______________|||||:|_|||\n______________GUCAGUG_GUA\n3'-UUU...UAUGA_______U___CUACG...UAG-5'\n_____________|___________|\n_____________177_________165\n |
5 -- 11 |
170 -- 176 |
-11.743 kcal/mol |
0.493889 kcal/mol |
0.598087 kcal/mol |
4 15@LB@ | |@LB@ 5'-UUUA AAGCC...UGG-3'@LB@ CAGUCGC CAU@LB@ |||||:| |||@LB@ GUCAGUG GUA@LB@3'-UUU...UAUGA U CUACG...UAG-5'@LB@ | |@LB@ 177 165@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -11.743 kcal/mol@LB@Unfolding Energy - mRNA 0.493889 kcal/mol@LB@Unfolding Energy - sRNA 0.598087 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 166 -- 176@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 170 -- 176@LB@ |
175 |
0.0199 |
0.3812 |
b3085 |
ygjP |
-10.42 |
0.228945 |
225 -- 233 |
128 -- 136 |
putative metal dependent hydrolase |
|
_____________224_______234\n_____________|_________|\n5'-AAC...UUCAG_________GAGCA...AAC-3'\n______________GGUUAUCCC\n______________|||:|||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________137_______127\n |
227 -- 233 |
128 -- 134 |
-15.1258 kcal/mol |
2.43348 kcal/mol |
4.55487 kcal/mol |
224 234@LB@ | |@LB@5'-AAC...UUCAG GAGCA...AAC-3'@LB@ GGUUAUCCC@LB@ |||:|||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 137 127@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -15.1258 kcal/mol@LB@Unfolding Energy - mRNA 2.43348 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 225 -- 233@LB@Position - sRNA 128 -- 136@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 128 -- 134@LB@ |
176 |
0.01994 |
0.3812 |
b2170 |
setB |
-11.80 |
0.122017 |
181 -- 237 |
58 -- 116 |
lactose/glucose efflux system |
|
_____________180____________238\n_____________|______________|\n5'-GCU...GAUCG______________AACUC...UGC-3'\n______________AC_CAG_CAUGCAU\n______________||_|||_||::|||\n______________UG_GUC_GUGUGUA\n3'-UUU...GGUUA__A___A_______CUACG...UAG-5'\n_____________|______________|\n_____________117____________57\n |
200 -- 206 |
166 -- 172 |
-10.2756 kcal/mol |
1.89616 kcal/mol |
0.604817 kcal/mol |
180 238@LB@ | |@LB@5'-GCU...GAUCG AACUC...UGC-3'@LB@ AC CAG CAUGCAU@LB@ || ||| ||::|||@LB@ UG GUC GUGUGUA@LB@3'-UUU...GGUUA A A CUACG...UAG-5'@LB@ | |@LB@ 117 57@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -10.2756 kcal/mol@LB@Unfolding Energy - mRNA 1.89616 kcal/mol@LB@Unfolding Energy - sRNA 0.604817 kcal/mol@LB@@LB@Position - mRNA 181 -- 237@LB@Position - sRNA 58 -- 116@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 166 -- 172@LB@ |
177 |
0.02028 |
0.3833 |
b1732 |
katE |
-12.45 |
0.090323 |
227 -- 246 |
168 -- 187 |
catalase HPII heme d-containing |
|
_____________226___________________247\n_____________|_____________________|\n5'-UGG...AACCC_______C__________C__UACAC...ACG-3'\n______________ACAUCAG_AC_CAGUCAC_AC\n______________|||:||:_||_|||||||_||\n______________UGUGGUU_UG_GUCAGUG_UG\n3'-UUU...UAAAA_______A__A__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
237 -- 243 |
170 -- 176 |
-19.9766 kcal/mol |
1.23864 kcal/mol |
4.88067 kcal/mol |
226 247@LB@ | |@LB@5'-UGG...AACCC C C UACAC...ACG-3'@LB@ ACAUCAG AC CAGUCAC AC@LB@ |||:||: || ||||||| ||@LB@ UGUGGUU UG GUCAGUG UG@LB@3'-UUU...UAAAA A A UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -19.9766 kcal/mol@LB@Unfolding Energy - mRNA 1.23864 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 227 -- 246@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 170 -- 176@LB@ |
178 |
0.02044 |
0.3833 |
b3433 |
asd |
-8.72 |
0.462346 |
170 -- 185 |
58 -- 71 |
aspartate-semialdehyde dehydrogenase NAD(P)-binding |
|
_____________169__________________186\n_____________|____________________|\n5'-UCA...UUAUA___________CUU______AAAAA...UCU-3'\n______________CAG_CACACAU___UGCAGG\n______________|||_|||||||___||||||\n______________GUC_GUGUGUA___ACGUCC\n3'-UUU...UAUGA___A_______CU_______GUUCA...UAG-5'\n_____________|____________________|\n_____________72___________________57\n |
173 -- 179 |
166 -- 172 |
-22.5694 kcal/mol |
4.04779 kcal/mol |
7.34152 kcal/mol |
169 186@LB@ | |@LB@5'-UCA...UUAUA CUU AAAAA...UCU-3'@LB@ CAG CACACAU UGCAGG@LB@ ||| ||||||| ||||||@LB@ GUC GUGUGUA ACGUCC@LB@3'-UUU...UAUGA A CU GUUCA...UAG-5'@LB@ | |@LB@ 72 57@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -22.5694 kcal/mol@LB@Unfolding Energy - mRNA 4.04779 kcal/mol@LB@Unfolding Energy - sRNA 7.34152 kcal/mol@LB@@LB@Position - mRNA 170 -- 185@LB@Position - sRNA 58 -- 71@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 166 -- 172@LB@ |
179 |
0.02059 |
0.3833 |
b2535 |
csiE |
-10.55 |
0.216292 |
103 -- 142 |
58 -- 90 |
stationary phase inducible protein |
|
_____________102___________143\n_____________|_____________|\n5'-GCA...GAUUA__________C__CAUUU...UGG-3'\n______________GCAUUCCCUU_GC\n______________|||::|||||_||\n______________CGUGGGGGAA_CG\n3'-UUU...UACCC_____________AAGUAG-5'\n_____________|_____________|\n_____________91____________57\n |
133 -- 139 |
9 -- 15 |
-16.9052 kcal/mol |
2.85301 kcal/mol |
6.64496 kcal/mol |
102 143@LB@ | |@LB@5'-GCA...GAUUA C CAUUU...UGG-3'@LB@ GCAUUCCCUU GC@LB@ |||::||||| ||@LB@ CGUGGGGGAA CG@LB@3'-UUU...UACCC AAGUAG-5'@LB@ | |@LB@ 91 57@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -16.9052 kcal/mol@LB@Unfolding Energy - mRNA 2.85301 kcal/mol@LB@Unfolding Energy - sRNA 6.64496 kcal/mol@LB@@LB@Position - mRNA 103 -- 142@LB@Position - sRNA 58 -- 90@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 9 -- 15@LB@ |
180 |
0.02081 |
0.3833 |
b3728 |
pstS |
-9.23 |
0.378852 |
18 -- 25 |
128 -- 135 |
phosphate ABC transporter periplasmic binding protein |
|
_____________17___________26\n_____________|____________|\n5'-AGA...UCCUA____________GUAGC...GUG-3'\n______________UUUUGCUUC_UC\n______________::|||||||_||\n______________GGAACGAAG_AG\n3'-UUU...GUGGG_________U__-5'\n_____________|___________|\n_____________136_________128\n |
149 -- 155 |
4 -- 10 |
-10.5275 kcal/mol |
1.71006 kcal/mol |
1.04836 kcal/mol |
17 26@LB@ | |@LB@5'-AGA...UCCUA GUAGC...GUG-3'@LB@ UUUUGCUUC UC@LB@ ::||||||| ||@LB@ GGAACGAAG AG@LB@3'-UUU...GUGGG U -5'@LB@ | |@LB@ 136 128@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -10.5275 kcal/mol@LB@Unfolding Energy - mRNA 1.71006 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 128 -- 135@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 4 -- 10@LB@ |
181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
184 |
0.02128 |
0.3833 |
b2831 |
mutH |
-12.07 |
0.107608 |
142 -- 230 |
114 -- 189 |
methyl-directed mismatch repair protein |
|
_____________141______________231\n_____________|________________|\n5'-UUC...CUGCG________________AUUGC...CGG-3'\n______________AAUAUUCGG_CACAUA\n______________||||:||:|_||||:|\n______________UUAUGAGUC_GUGUGU\n3'-UUU...UGUGG_________A______ACUAC...UAG-5'\n_____________|________________|\n_____________190______________113\n |
154 -- 160 |
174 -- 180 |
-15.1193 kcal/mol |
2.199 kcal/mol |
0.596263 kcal/mol |
141 231@LB@ | |@LB@5'-UUC...CUGCG AUUGC...CGG-3'@LB@ AAUAUUCGG CACAUA@LB@ ||||:||:| ||||:|@LB@ UUAUGAGUC GUGUGU@LB@3'-UUU...UGUGG A ACUAC...UAG-5'@LB@ | |@LB@ 190 113@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -15.1193 kcal/mol@LB@Unfolding Energy - mRNA 2.199 kcal/mol@LB@Unfolding Energy - sRNA 0.596263 kcal/mol@LB@@LB@Position - mRNA 142 -- 230@LB@Position - sRNA 114 -- 189@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 174 -- 180@LB@ |
185 |
0.02128 |
0.3833 |
b2276 |
nuoN |
-8.72 |
0.461673 |
62 -- 81 |
196 -- 211 |
NADH:ubiquinone oxidoreductase membrane subunit N |
|
_____________61______________82\n_____________|_______________|\n5'-GUA...UAUGA__________U____GUGCU...AUC-3'\n______________UC_CUGUUGC_GGUG\n______________||_||||:||_|||:\n______________AG_GACAGCG_CCAU\n3'-UUU...GUUGA__C____________UUUAU...UAG-5'\n_____________|_______________|\n_____________212_____________195\n |
69 -- 75 |
52 -- 58 |
-15.8669 kcal/mol |
5.2118 kcal/mol |
5.88061 kcal/mol |
61 82@LB@ | |@LB@5'-GUA...UAUGA U GUGCU...AUC-3'@LB@ UC CUGUUGC GGUG@LB@ || ||||:|| |||:@LB@ AG GACAGCG CCAU@LB@3'-UUU...GUUGA C UUUAU...UAG-5'@LB@ | |@LB@ 212 195@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -15.8669 kcal/mol@LB@Unfolding Energy - mRNA 5.2118 kcal/mol@LB@Unfolding Energy - sRNA 5.88061 kcal/mol@LB@@LB@Position - mRNA 62 -- 81@LB@Position - sRNA 196 -- 211@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 52 -- 58@LB@ |
186 |
0.02152 |
0.3833 |
b3581 |
sgbH |
-10.17 |
0.255482 |
135 -- 158 |
123 -- 153 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________134________159\n_____________|__________|\n5'-UUU...UAAGG__________UAUGA...AAG-3'\n______________AG_CACACAU\n______________||_|||||||\n______________UC_GUGUGUA\n3'-UUU...AUGAG__A_______CUACG...UAG-5'\n_____________|__________|\n_____________154________122\n |
193 -- 199 |
166 -- 172 |
-9.15702 kcal/mol |
1.98532 kcal/mol |
0.591348 kcal/mol |
134 159@LB@ | |@LB@5'-UUU...UAAGG UAUGA...AAG-3'@LB@ AG CACACAU@LB@ || |||||||@LB@ UC GUGUGUA@LB@3'-UUU...AUGAG A CUACG...UAG-5'@LB@ | |@LB@ 154 122@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -9.15702 kcal/mol@LB@Unfolding Energy - mRNA 1.98532 kcal/mol@LB@Unfolding Energy - sRNA 0.591348 kcal/mol@LB@@LB@Position - mRNA 135 -- 158@LB@Position - sRNA 123 -- 153@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 166 -- 172@LB@ |
187 |
0.02173 |
0.3833 |
b3679 |
yidK |
-10.16 |
0.256396 |
240 -- 256 |
191 -- 205 |
putative transporter |
|
_____________239________________________________________257\n_____________|__________________________________________|\n5'-UUU...UUACG_________GC______________U____GAA_________AAACA...AAG-3'\n______________CUGCUGGUG__GGUGAU____CACC_GGUG___GGUC_CGCA\n______________|||||||:|__||||||____||||_::|:___:|||_|:||\n______________GACGACCGC__CCACUA____GUGG_UUAU___UCAG_GUGU\n3'-UUU...UAUUA_________________AAAU_________GAG____U____ACUAC...UAG-5'\n_____________|__________________________________________|\n_____________206________________________________________190\n |
242 -- 248 |
197 -- 203 |
-39.2862 kcal/mol |
16.885 kcal/mol |
15.3993 kcal/mol |
239 257@LB@ | |@LB@5'-UUU...UUACG GC U GAA AAACA...AAG-3'@LB@ CUGCUGGUG GGUGAU CACC GGUG GGUC CGCA@LB@ |||||||:| |||||| |||| ::|: :||| |:||@LB@ GACGACCGC CCACUA GUGG UUAU UCAG GUGU@LB@3'-UUU...UAUUA AAAU GAG U ACUAC...UAG-5'@LB@ | |@LB@ 206 190@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -39.2862 kcal/mol@LB@Unfolding Energy - mRNA 16.885 kcal/mol@LB@Unfolding Energy - sRNA 15.3993 kcal/mol@LB@@LB@Position - mRNA 240 -- 256@LB@Position - sRNA 191 -- 205@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 197 -- 203@LB@ |
188 |
0.0218 |
0.3833 |
b3357 |
crp |
-15.41 |
0.022266 |
196 -- 257 |
123 -- 172 |
cAMP-activated global transcription factor mediator of catabolite repression |
|
_____________195_________________258\n_____________|___________________|\n5'-GAC...AUAAC____________UU_____ACCGC...AGG-3'\n______________CGCGCAUGGUGC__GGCAA\n______________|:|:||||:|||__|||||\n______________GUGUGUACUACG__CCGUU\n3'-UUU...AGUCA____________U______CAGUU...UAG-5'\n_____________|___________________|\n_____________173_________________122\n |
201 -- 207 |
161 -- 167 |
-26.7729 kcal/mol |
8.17538 kcal/mol |
7.52835 kcal/mol |
195 258@LB@ | |@LB@5'-GAC...AUAAC UU ACCGC...AGG-3'@LB@ CGCGCAUGGUGC GGCAA@LB@ |:|:||||:||| |||||@LB@ GUGUGUACUACG CCGUU@LB@3'-UUU...AGUCA U CAGUU...UAG-5'@LB@ | |@LB@ 173 122@LB@@LB@@LB@Energy -15.41 kcal/mol@LB@Hybridization Energy -26.7729 kcal/mol@LB@Unfolding Energy - mRNA 8.17538 kcal/mol@LB@Unfolding Energy - sRNA 7.52835 kcal/mol@LB@@LB@Position - mRNA 196 -- 257@LB@Position - sRNA 123 -- 172@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 161 -- 167@LB@ |
189 |
0.02188 |
0.3833 |
b4033 |
malF |
-11.66 |
0.130598 |
273 -- 284 |
194 -- 205 |
maltose transporter subunit |
|
_____________272__________285\n_____________|____________|\n5'-CUG...UCGGC____________UACCU...UAA-3'\n______________CUGCUGGUGGGU\n______________|||||||:||||\n______________GACGACCGCCCA\n3'-UUU...UAUUA____________CUAAA...UAG-5'\n_____________|____________|\n_____________206__________193\n |
278 -- 284 |
194 -- 200 |
-24.1506 kcal/mol |
7.59361 kcal/mol |
9.05892 kcal/mol |
272 285@LB@ | |@LB@5'-CUG...UCGGC UACCU...UAA-3'@LB@ CUGCUGGUGGGU@LB@ |||||||:||||@LB@ GACGACCGCCCA@LB@3'-UUU...UAUUA CUAAA...UAG-5'@LB@ | |@LB@ 206 193@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -24.1506 kcal/mol@LB@Unfolding Energy - mRNA 7.59361 kcal/mol@LB@Unfolding Energy - sRNA 9.05892 kcal/mol@LB@@LB@Position - mRNA 273 -- 284@LB@Position - sRNA 194 -- 205@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 194 -- 200@LB@ |
190 |
0.02217 |
0.3833 |
b2754 |
ygbF |
-10.33 |
0.238061 |
176 -- 225 |
124 -- 165 |
CRISPR adaptation ssRNA endonuclease |
|
_____________175____________226\n_____________|______________|\n5'-UGG...AAAAU________GC____ACGAG...GUG-3'\n______________GUACCUCC__GCUU\n______________|:|||:||__||||\n______________CGUGGGGG__CGAA\n3'-UUU...UACCC________AA____GUAG-5'\n_____________|______________|\n_____________166____________123\n |
232 -- 238 |
11 -- 17 |
-17.8256 kcal/mol |
3.33543 kcal/mol |
6.90657 kcal/mol |
175 226@LB@ | |@LB@5'-UGG...AAAAU GC ACGAG...GUG-3'@LB@ GUACCUCC GCUU@LB@ |:|||:|| ||||@LB@ CGUGGGGG CGAA@LB@3'-UUU...UACCC AA GUAG-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -17.8256 kcal/mol@LB@Unfolding Energy - mRNA 3.33543 kcal/mol@LB@Unfolding Energy - sRNA 6.90657 kcal/mol@LB@@LB@Position - mRNA 176 -- 225@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 11 -- 17@LB@ |
191 |
0.02237 |
0.3833 |
b1658 |
purR |
-11.05 |
0.172432 |
254 -- 265 |
163 -- 174 |
transcriptional repressor hypoxanthine-binding |
|
_____________253_______________266\n_____________|_________________|\n5'-UUU...CUACA___GU____________CAACA...GCA-3'\n______________ACU__GUCACACGUGAU\n______________|||__|||||||:||||\n______________UGA__CAGUGUGUACUA\n3'-UUU...GGUUA___GU____________CGUCC...UAG-5'\n_____________|_________________|\n_____________175_______________162\n |
259 -- 265 |
163 -- 169 |
-20.3148 kcal/mol |
3.57431 kcal/mol |
4.30742 kcal/mol |
253 266@LB@ | |@LB@5'-UUU...CUACA GU CAACA...GCA-3'@LB@ ACU GUCACACGUGAU@LB@ ||| |||||||:||||@LB@ UGA CAGUGUGUACUA@LB@3'-UUU...GGUUA GU CGUCC...UAG-5'@LB@ | |@LB@ 175 162@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -20.3148 kcal/mol@LB@Unfolding Energy - mRNA 3.57431 kcal/mol@LB@Unfolding Energy - sRNA 4.30742 kcal/mol@LB@@LB@Position - mRNA 254 -- 265@LB@Position - sRNA 163 -- 174@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 163 -- 169@LB@ |
192 |
0.02246 |
0.3833 |
b4340 |
yjiR |
-11.68 |
0.128907 |
36 -- 62 |
126 -- 153 |
putative DNA-binding transcriptional regulator/putative aminotransferase |
|
_____________35_______63\n_____________|________|\n5'-AGC...CAGAG________AUCCA...GUC-3'\n______________GCUUCAUC\n______________||||||||\n______________CGAAGUAG\n3'-UUU...GGGAA________-5'\n_____________|_______|\n_____________154_____126\n |
50 -- 56 |
1 -- 7 |
-12.7164 kcal/mol |
1.73081 kcal/mol |
0.703102 kcal/mol |
35 63@LB@ | |@LB@5'-AGC...CAGAG AUCCA...GUC-3'@LB@ GCUUCAUC@LB@ ||||||||@LB@ CGAAGUAG@LB@3'-UUU...GGGAA -5'@LB@ | |@LB@ 154 126@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -12.7164 kcal/mol@LB@Unfolding Energy - mRNA 1.73081 kcal/mol@LB@Unfolding Energy - sRNA 0.703102 kcal/mol@LB@@LB@Position - mRNA 36 -- 62@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 1 -- 7@LB@ |
193 |
0.0225 |
0.3833 |
b3751 |
rbsB |
-14.76 |
0.030308 |
38 -- 56 |
74 -- 93 |
D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
|
_____________37________________________________________________57\n_____________|_________________________________________________|\n___5'-GCGGUACG_____GG______GAAAA_____CA___U____________________UUAAU...UCU-3'\n______________AGUCU__CGGGCG_____GGUCG__UUG_UGGGACGUU_GAUCGGCGCA\n______________||||:__|::||:_____::|||__|||_|||||||:|_:|:|::||||\n______________UCAGG__GUUCGU_____UUAGC__AAC_ACCCUGCGA_UUGGUUGCGU\n3'-UUU...CGUAG_____AA______ACCAA____________________A__________UGGUC...UAG-5'\n_____________|_________________________________________________|\n_____________94________________________________________________73\n |
40 -- 46 |
85 -- 91 |
-47.7546 kcal/mol |
17.619 kcal/mol |
19.1533 kcal/mol |
37 57@LB@ | |@LB@ 5'-GCGGUACG GG GAAAA CA U UUAAU...UCU-3'@LB@ AGUCU CGGGCG GGUCG UUG UGGGACGUU GAUCGGCGCA@LB@ ||||: |::||: ::||| ||| |||||||:| :|:|::||||@LB@ UCAGG GUUCGU UUAGC AAC ACCCUGCGA UUGGUUGCGU@LB@3'-UUU...CGUAG AA ACCAA A UGGUC...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -47.7546 kcal/mol@LB@Unfolding Energy - mRNA 17.619 kcal/mol@LB@Unfolding Energy - sRNA 19.1533 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 85 -- 91@LB@ |
194 |
0.02283 |
0.3833 |
b3823 |
rhtC |
-9.67 |
0.316154 |
216 -- 300 |
113 -- 178 |
threonine efflux pump |
|
_____________215___________________301\n_____________|_____________________|\n5'-AGA...UAUUU____CC_______________CAUUG...GUU-3'\n______________CUCA__GUCGC_CAUGGUGCA\n______________||||__|||:|_||||:||||\n______________GAGU__CAGUG_GUACUACGU\n3'-UUU...GUUAU___________U_________CCGUU...UAG-5'\n_____________|_____________________|\n_____________179___________________112\n |
228 -- 234 |
161 -- 167 |
-23.3741 kcal/mol |
7.13181 kcal/mol |
4.79874 kcal/mol |
215 301@LB@ | |@LB@5'-AGA...UAUUU CC CAUUG...GUU-3'@LB@ CUCA GUCGC CAUGGUGCA@LB@ |||| |||:| ||||:||||@LB@ GAGU CAGUG GUACUACGU@LB@3'-UUU...GUUAU U CCGUU...UAG-5'@LB@ | |@LB@ 179 112@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -23.3741 kcal/mol@LB@Unfolding Energy - mRNA 7.13181 kcal/mol@LB@Unfolding Energy - sRNA 4.79874 kcal/mol@LB@@LB@Position - mRNA 216 -- 300@LB@Position - sRNA 113 -- 178@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 161 -- 167@LB@ |
195 |
0.02319 |
0.3833 |
b1233 |
ychJ |
-7.86 |
0.620262 |
61 -- 80 |
1 -- 18 |
UPF0225 family protein |
|
_____________60____________________________________81\n_____________|_____________________________________|\n5'-CUU...GCUAC_______________A___CUACU_____________ACGCC...UCA-3'\n______________UGCUCGGUUA_ACAU_GUG_____CAGGC_GGUUAAU\n______________|:|||:||:|_||||_:||_____|||||_:||:||:\n______________AUGAGUCAGU_UGUA_UAC_____GUCCG_UCAGUUG\n3'-UUU...UGGUU__________G____C_____________U_______AAAGU...UAG-5'\n_____________|_____________________________________|\n_____________19____________________________________0\n |
139 -- 145 |
171 -- 177 |
-29.0991 kcal/mol |
9.80481 kcal/mol |
8.18679 kcal/mol |
60 81@LB@ | |@LB@5'-CUU...GCUAC A CUACU ACGCC...UCA-3'@LB@ UGCUCGGUUA ACAU GUG CAGGC GGUUAAU@LB@ |:|||:||:| |||| :|| ||||| :||:||:@LB@ AUGAGUCAGU UGUA UAC GUCCG UCAGUUG@LB@3'-UUU...UGGUU G C U AAAGU...UAG-5'@LB@ | |@LB@ 19 0@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -29.0991 kcal/mol@LB@Unfolding Energy - mRNA 9.80481 kcal/mol@LB@Unfolding Energy - sRNA 8.18679 kcal/mol@LB@@LB@Position - mRNA 61 -- 80@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 171 -- 177@LB@ |
196 |
0.0235 |
0.3833 |
b3105 |
yhaJ |
-11.17 |
0.163135 |
292 -- 299 |
86 -- 93 |
LysR family putative transcriptional regulator |
|
_____________291______300\n_____________|________|\n5'-CGG...UGAGC________G-3'\n______________UGGGACGC\n______________||||||||\n______________ACCCUGCG\n3'-UUU...GCAAC________AAUUG...UAG-5'\n_____________|________|\n_____________94_______85\n |
293 -- 299 |
86 -- 92 |
-14.7688 kcal/mol |
2.10679 kcal/mol |
4.21973 kcal/mol |
291 300@LB@ | |@LB@5'-CGG...UGAGC G-3'@LB@ UGGGACGC@LB@ ||||||||@LB@ ACCCUGCG@LB@3'-UUU...GCAAC AAUUG...UAG-5'@LB@ | |@LB@ 94 85@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -14.7688 kcal/mol@LB@Unfolding Energy - mRNA 2.10679 kcal/mol@LB@Unfolding Energy - sRNA 4.21973 kcal/mol@LB@@LB@Position - mRNA 292 -- 299@LB@Position - sRNA 86 -- 93@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 86 -- 92@LB@ |
197 |
0.02355 |
0.3833 |
b2764 |
cysJ |
-10.17 |
0.255883 |
3 -- 30 |
98 -- 123 |
sulfite reductase alpha subunit flavoprotein |
|
_____________2________31\n_____________|________|\n5'-UUC...AACAG________ACUGG...UUG-3'\n______________CUUUGCUU\n______________|:||||||\n______________GGAACGAA\n3'-UUU...GUGGG________GUAG-5'\n_____________|________|\n_____________124______97\n |
176 -- 182 |
5 -- 11 |
-8.59037 kcal/mol |
0.881795 kcal/mol |
1.04254 kcal/mol |
2 31@LB@ | |@LB@5'-UUC...AACAG ACUGG...UUG-3'@LB@ CUUUGCUU@LB@ |:||||||@LB@ GGAACGAA@LB@3'-UUU...GUGGG GUAG-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -8.59037 kcal/mol@LB@Unfolding Energy - mRNA 0.881795 kcal/mol@LB@Unfolding Energy - sRNA 1.04254 kcal/mol@LB@@LB@Position - mRNA 3 -- 30@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 5 -- 11@LB@ |
198 |
0.0236 |
0.3833 |
b1110 |
ycfJ |
-10.00 |
0.275196 |
69 -- 84 |
142 -- 161 |
uncharacterized protein |
|
_____________68__________________85\n_____________|___________________|\n5'-ACU...CCAGC_______GC___UU_____UUCUG...AAU-3'\n______________CAUUCCC__GCU__UCAUC\n______________||::|||__|||__|||||\n______________GUGGGGG__CGA__AGUAG\n3'-UUU...ACCCC_______AA__________-5'\n_____________|__________________|\n_____________162________________142\n |
113 -- 119 |
11 -- 17 |
-18.8572 kcal/mol |
2.50144 kcal/mol |
7.16879 kcal/mol |
68 85@LB@ | |@LB@5'-ACU...CCAGC GC UU UUCUG...AAU-3'@LB@ CAUUCCC GCU UCAUC@LB@ ||::||| ||| |||||@LB@ GUGGGGG CGA AGUAG@LB@3'-UUU...ACCCC AA -5'@LB@ | |@LB@ 162 142@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -18.8572 kcal/mol@LB@Unfolding Energy - mRNA 2.50144 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 142 -- 161@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 11 -- 17@LB@ |
199 |
0.02363 |
0.3833 |
b4141 |
yjeH |
-8.04 |
0.585705 |
57 -- 67 |
64 -- 74 |
putative transporter |
|
_____________56_____________68\n_____________|______________|\n5'-CAG...AAAUC___G_______C__AAAUU...CUG-3'\n______________UAC_CAGUUGC_CA\n______________|||_||||::|_||\n______________AUG_GUCAGUG_GU\n3'-UUU...UGGUU___A_______U__ACUAC...UAG-5'\n_____________|______________|\n_____________75_____________63\n |
163 -- 169 |
170 -- 176 |
-11.2481 kcal/mol |
2.09942 kcal/mol |
0.433965 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAUC G C AAAUU...CUG-3'@LB@ UAC CAGUUGC CA@LB@ ||| ||||::| ||@LB@ AUG GUCAGUG GU@LB@3'-UUU...UGGUU A U ACUAC...UAG-5'@LB@ | |@LB@ 75 63@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -11.2481 kcal/mol@LB@Unfolding Energy - mRNA 2.09942 kcal/mol@LB@Unfolding Energy - sRNA 0.433965 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 64 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 170 -- 176@LB@ |
200 |
0.02363 |
0.3833 |
b3068 |
mug |
-12.10 |
0.106144 |
279 -- 297 |
1 -- 19 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________278__________________298\n_____________|____________________|\n5'-UGG...GGACU___UU_______________CGG-3'\n______________GGU__UCCCUUUGCU_CAUC\n______________||:__:|||:|||||_||||\n______________CCG__GGGGGAACGA_GUAG\n3'-UUU...GUACC___U___________A____-5'\n_____________|___________________|\n_____________20__________________1\n |
287 -- 293 |
6 -- 12 |
-22.9494 kcal/mol |
3.41941 kcal/mol |
8.43224 kcal/mol |
278 298@LB@ | |@LB@5'-UGG...GGACU UU CGG-3'@LB@ GGU UCCCUUUGCU CAUC@LB@ ||: :|||:||||| ||||@LB@ CCG GGGGGAACGA GUAG@LB@3'-UUU...GUACC U A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.9494 kcal/mol@LB@Unfolding Energy - mRNA 3.41941 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 6 -- 12@LB@ |