79 |
0.008119 |
0.3458 |
b0945 |
pyrD |
-11.48 |
0.141710 |
30 -- 41 |
191 -- 202 |
dihydro-orotate oxidase FMN-linked |
|
_____________29______________________42\n_____________|_______________________|\n5'-UGU...AGCAA_____________A___GA____CGU-3'\n______________UUACGCCG_UAUU_CAG__ACGC\n______________||||:||:_||:|_|||__||:|\n______________AAUGUGGU_AUGA_GUC__UGUG\n3'-UUU...ACUAA________U________AG____UACUA...UAG-5'\n_____________|_______________________|\n_____________203_____________________190\n |
277 -- 283 |
182 -- 188 |
-20.4941 kcal/mol |
3.55802 kcal/mol |
4.91485 kcal/mol |
29 42@LB@ | |@LB@5'-UGU...AGCAA A GA CGU-3'@LB@ UUACGCCG UAUU CAG ACGC@LB@ ||||:||: ||:| ||| ||:|@LB@ AAUGUGGU AUGA GUC UGUG@LB@3'-UUU...ACUAA U AG UACUA...UAG-5'@LB@ | |@LB@ 203 190@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.4941 kcal/mol@LB@Unfolding Energy - mRNA 3.55802 kcal/mol@LB@Unfolding Energy - sRNA 4.91485 kcal/mol@LB@@LB@Position - mRNA 30 -- 41@LB@Position - sRNA 191 -- 202@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 182 -- 188@LB@ |
80 |
0.008443 |
0.3551 |
b3791 |
wecE |
-14.19 |
0.039608 |
22 -- 66 |
14 -- 64 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
_____________21______________67\n_____________|_______________|\n5'-GAC...ACCGC_______________GGUGA...CCC-3'\n______________GUACU_GGUUAUACA\n______________:||||_:||:|:|||\n______________UAUGA_UCAGUGUGU\n3'-UUU...GUGGU_____G_________ACUAC...UAG-5'\n_____________|_______________|\n_____________65______________13\n |
185 -- 191 |
167 -- 173 |
-12.5686 kcal/mol |
2.73267 kcal/mol |
0.435744 kcal/mol |
21 67@LB@ | |@LB@5'-GAC...ACCGC GGUGA...CCC-3'@LB@ GUACU GGUUAUACA@LB@ :|||| :||:|:|||@LB@ UAUGA UCAGUGUGU@LB@3'-UUU...GUGGU G ACUAC...UAG-5'@LB@ | |@LB@ 65 13@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -12.5686 kcal/mol@LB@Unfolding Energy - mRNA 2.73267 kcal/mol@LB@Unfolding Energy - sRNA 0.435744 kcal/mol@LB@@LB@Position - mRNA 22 -- 66@LB@Position - sRNA 14 -- 64@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 167 -- 173@LB@ |
81 |
0.008673 |
0.3575 |
b1683 |
sufB |
-9.84 |
0.294156 |
211 -- 257 |
124 -- 171 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________210_______________258\n_____________|_________________|\n5'-GUU...AAUCA________AAUU_____ACCCU...AGC-3'\n______________GAUAUUCA____UCACA\n______________:|||:|||____|||||\n______________UUAUGAGU____AGUGU\n3'-UUU...UGUGG________C________GUACU...UAG-5'\n_____________|_________________|\n_____________172_______________123\n |
127 -- 133 |
175 -- 181 |
-8.93573 kcal/mol |
1.46068 kcal/mol |
0.409577 kcal/mol |
210 258@LB@ | |@LB@5'-GUU...AAUCA AAUU ACCCU...AGC-3'@LB@ GAUAUUCA UCACA@LB@ :|||:||| |||||@LB@ UUAUGAGU AGUGU@LB@3'-UUU...UGUGG C GUACU...UAG-5'@LB@ | |@LB@ 172 123@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -8.93573 kcal/mol@LB@Unfolding Energy - mRNA 1.46068 kcal/mol@LB@Unfolding Energy - sRNA 0.409577 kcal/mol@LB@@LB@Position - mRNA 211 -- 257@LB@Position - sRNA 124 -- 171@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 175 -- 181@LB@ |
82 |
0.008839 |
0.3575 |
b3680 |
yidL |
-8.33 |
0.532337 |
91 -- 113 |
142 -- 164 |
AraC family putative transcriptional regulator |
|
_____________90________________114\n_____________|_________________|\n5'-AAC...UGCGU________GCAG_____UUCUU...UGA-3'\n______________CGGGUCAG____UCAGA\n______________|::||||:____|||||\n______________GUUCAGUU____AGUCU\n3'-UUU...CGUCC________GAA______UAACG...UAG-5'\n_____________|_________________|\n_____________165_______________141\n |
97 -- 103 |
151 -- 157 |
-14.3717 kcal/mol |
4.36777 kcal/mol |
4.37859 kcal/mol |
90 114@LB@ | |@LB@5'-AAC...UGCGU GCAG UUCUU...UGA-3'@LB@ CGGGUCAG UCAGA@LB@ |::||||: |||||@LB@ GUUCAGUU AGUCU@LB@3'-UUU...CGUCC GAA UAACG...UAG-5'@LB@ | |@LB@ 165 141@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -14.3717 kcal/mol@LB@Unfolding Energy - mRNA 4.36777 kcal/mol@LB@Unfolding Energy - sRNA 4.37859 kcal/mol@LB@@LB@Position - mRNA 91 -- 113@LB@Position - sRNA 142 -- 164@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 151 -- 157@LB@ |
83 |
0.008941 |
0.3575 |
b3343 |
tusB |
-13.46 |
0.055944 |
1 -- 14 |
190 -- 203 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
______________1_____________15\n______________|_____________|\n___________5'-_______C______ACAUU...GCG-3'\n______________GCUGGCG_GUGAUU\n______________|||||||_||||||\n______________CGACCGC_CACUAA\n3'-UUU...UUAGA_______C______AAUGU...UAG-5'\n_____________|______________|\n_____________204____________189\n |
1 -- 7 |
197 -- 203 |
-22.3351 kcal/mol |
4.22102 kcal/mol |
9.06745 kcal/mol |
1 15@LB@ | |@LB@ 5'- C ACAUU...GCG-3'@LB@ GCUGGCG GUGAUU@LB@ ||||||| ||||||@LB@ CGACCGC CACUAA@LB@3'-UUU...UUAGA C AAUGU...UAG-5'@LB@ | |@LB@ 204 189@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -22.3351 kcal/mol@LB@Unfolding Energy - mRNA 4.22102 kcal/mol@LB@Unfolding Energy - sRNA 9.06745 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 190 -- 203@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 197 -- 203@LB@ |
84 |
0.009006 |
0.3575 |
b1924 |
fliD |
-8.51 |
0.498321 |
24 -- 43 |
139 -- 158 |
flagellar filament capping protein |
|
_____________23_____________44\n_____________|______________|\n5'-CGU...UAAAA____C_________UUUUU...UUU-3'\n______________CAAC_UUUAGAAUU\n______________||||_||:||||||\n______________GUUG_AAGUCUUAA\n3'-UUU...GUUCA____A_________CGCCA...UAG-5'\n_____________|______________|\n_____________159____________138\n |
37 -- 43 |
139 -- 145 |
-11.0468 kcal/mol |
1.39956 kcal/mol |
1.83266 kcal/mol |
23 44@LB@ | |@LB@5'-CGU...UAAAA C UUUUU...UUU-3'@LB@ CAAC UUUAGAAUU@LB@ |||| ||:||||||@LB@ GUUG AAGUCUUAA@LB@3'-UUU...GUUCA A CGCCA...UAG-5'@LB@ | |@LB@ 159 138@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -11.0468 kcal/mol@LB@Unfolding Energy - mRNA 1.39956 kcal/mol@LB@Unfolding Energy - sRNA 1.83266 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 139 -- 158@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 139 -- 145@LB@ |
85 |
0.009065 |
0.3575 |
b3155 |
yhbQ |
-10.34 |
0.236900 |
54 -- 88 |
123 -- 160 |
GIY-YIG nuclease superfamily protein |
|
_____________53______________________89\n_____________|_______________________|\n5'-UUU...GAUCC_____G__GACAAUAA_______ACCGG...GCG-3'\n______________GUACC_CC________GCUUUAU\n______________|:|||_||________||||:||\n______________CGUGG_GG________CGAAGUA\n3'-UUU...UACCC_____G__AA_____________G-5'\n_____________|_______________________|\n_____________161_____________________122\n |
245 -- 251 |
2 -- 8 |
-16.2438 kcal/mol |
1.2562 kcal/mol |
7.2187 kcal/mol |
53 89@LB@ | |@LB@5'-UUU...GAUCC G GACAAUAA ACCGG...GCG-3'@LB@ GUACC CC GCUUUAU@LB@ |:||| || ||||:||@LB@ CGUGG GG CGAAGUA@LB@3'-UUU...UACCC G AA G-5'@LB@ | |@LB@ 161 122@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -16.2438 kcal/mol@LB@Unfolding Energy - mRNA 1.2562 kcal/mol@LB@Unfolding Energy - sRNA 7.2187 kcal/mol@LB@@LB@Position - mRNA 54 -- 88@LB@Position - sRNA 123 -- 160@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 2 -- 8@LB@ |
86 |
0.009326 |
0.3575 |
b0899 |
ycaM |
-11.50 |
0.140486 |
23 -- 68 |
127 -- 173 |
putative transporter |
|
_____________22_______________________________________________________69\n_____________|________________________________________________________|\n5'-AGC...GAACU____GUU______UC_____UUUUUU___UCUU__A__U__C____U_________AAUUU...AUG-3'\n______________UACU___UCACAC____UGC______GUU____CU_UC_GA_UUGC__UUAUUCCA\n______________||||___||||||____|||______||:____||_||_||_||||__|:||:|||\n______________AUGA___AGUGUG____ACG______CAG____GA_AG_CU_AACG__AGUAGGGU\n3'-UUU...UGGUU____GUC______UACU___UCCGUU___UU____A__U__U____CC________GACGU...UAG-5'\n_____________|________________________________________________________|\n_____________174______________________________________________________126\n |
62 -- 68 |
127 -- 133 |
-29.7478 kcal/mol |
2.56458 kcal/mol |
15.6497 kcal/mol |
22 69@LB@ | |@LB@5'-AGC...GAACU GUU UC UUUUUU UCUU A U C U AAUUU...AUG-3'@LB@ UACU UCACAC UGC GUU CU UC GA UUGC UUAUUCCA@LB@ |||| |||||| ||| ||: || || || |||| |:||:|||@LB@ AUGA AGUGUG ACG CAG GA AG CU AACG AGUAGGGU@LB@3'-UUU...UGGUU GUC UACU UCCGUU UU A U U CC GACGU...UAG-5'@LB@ | |@LB@ 174 126@LB@@LB@@LB@Energy -11.50 kcal/mol@LB@Hybridization Energy -29.7478 kcal/mol@LB@Unfolding Energy - mRNA 2.56458 kcal/mol@LB@Unfolding Energy - sRNA 15.6497 kcal/mol@LB@@LB@Position - mRNA 23 -- 68@LB@Position - sRNA 127 -- 173@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 127 -- 133@LB@ |
87 |
0.009479 |
0.3575 |
b1192 |
ldcA |
-9.25 |
0.375459 |
184 -- 216 |
125 -- 154 |
murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A |
|
_____________183_______________217\n_____________|_________________|\n5'-UGC...AGCAC__CG_____________UCCAG...UCA-3'\n______________GC__CGCUG_CGUGGUA\n______________:|__|||||_||:||||\n______________UG__GCGAC_GCGCCAU\n3'-UUU...CGUGU__AA_____A_______UUUAU...UAG-5'\n_____________|_________________|\n_____________155_______________124\n |
261 -- 267 |
48 -- 54 |
-20.6657 kcal/mol |
8.36057 kcal/mol |
6.14531 kcal/mol |
183 217@LB@ | |@LB@5'-UGC...AGCAC CG UCCAG...UCA-3'@LB@ GC CGCUG CGUGGUA@LB@ :| ||||| ||:||||@LB@ UG GCGAC GCGCCAU@LB@3'-UUU...CGUGU AA A UUUAU...UAG-5'@LB@ | |@LB@ 155 124@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -20.6657 kcal/mol@LB@Unfolding Energy - mRNA 8.36057 kcal/mol@LB@Unfolding Energy - sRNA 6.14531 kcal/mol@LB@@LB@Position - mRNA 184 -- 216@LB@Position - sRNA 125 -- 154@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 48 -- 54@LB@ |
88 |
0.009956 |
0.3575 |
b2672 |
ygaM |
-12.38 |
0.093122 |
193 -- 231 |
56 -- 92 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________192______232\n_____________|________|\n5'-AAC...UGAAC________AGAAA...AGU-3'\n______________CUCAGUUA\n______________||||||:|\n______________GAGUCAGU\n3'-UUU...GUUAU________GUGUA...UAG-5'\n_____________|________|\n_____________93_______55\n |
142 -- 148 |
171 -- 177 |
-10.1878 kcal/mol |
1.87036 kcal/mol |
0.207782 kcal/mol |
192 232@LB@ | |@LB@5'-AAC...UGAAC AGAAA...AGU-3'@LB@ CUCAGUUA@LB@ ||||||:|@LB@ GAGUCAGU@LB@3'-UUU...GUUAU GUGUA...UAG-5'@LB@ | |@LB@ 93 55@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -10.1878 kcal/mol@LB@Unfolding Energy - mRNA 1.87036 kcal/mol@LB@Unfolding Energy - sRNA 0.207782 kcal/mol@LB@@LB@Position - mRNA 193 -- 231@LB@Position - sRNA 56 -- 92@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 171 -- 177@LB@ |