139 |
0.01488 |
0.3575 |
b2167 |
fruA |
-12.05 |
0.108648 |
223 -- 242 |
167 -- 187 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________222___________________243\n_____________|_____________________|\n5'-CGC...UAUUG_________________G___CGCGC...AAA-3'\n______________ACGCUAAU_CUCGGUCA_GCA\n______________||:|:|||_|||:||||_:||\n______________UGUGGUUA_GAGUCAGU_UGU\n3'-UUU...UAAAA________U________G___ACUAC...UAG-5'\n_____________|_____________________|\n_____________188___________________166\n |
232 -- 238 |
171 -- 177 |
-25.758 kcal/mol |
6.7352 kcal/mol |
5.05492 kcal/mol |
222 243@LB@ | |@LB@5'-CGC...UAUUG G CGCGC...AAA-3'@LB@ ACGCUAAU CUCGGUCA GCA@LB@ ||:|:||| |||:|||| :||@LB@ UGUGGUUA GAGUCAGU UGU@LB@3'-UUU...UAAAA U G ACUAC...UAG-5'@LB@ | |@LB@ 188 166@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -25.758 kcal/mol@LB@Unfolding Energy - mRNA 6.7352 kcal/mol@LB@Unfolding Energy - sRNA 5.05492 kcal/mol@LB@@LB@Position - mRNA 223 -- 242@LB@Position - sRNA 167 -- 187@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 171 -- 177@LB@ |
140 |
0.01495 |
0.3575 |
b2415 |
ptsH |
-9.89 |
0.288161 |
112 -- 122 |
24 -- 34 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
|
_____________111____________123\n_____________|______________|\n5'-UUG...CAAUA_____UA_______ACCGC...UUA-3'\n______________CAGGC__AAGUCGA\n______________|||||__|||||:|\n______________GUCCG__UUCAGUU\n3'-UUU...ACUAC______________GAAAG...UAG-5'\n_____________|______________|\n_____________35_____________23\n |
138 -- 144 |
150 -- 156 |
-14.4294 kcal/mol |
3.35524 kcal/mol |
6.54796 kcal/mol |
111 123@LB@ | |@LB@5'-UUG...CAAUA UA ACCGC...UUA-3'@LB@ CAGGC AAGUCGA@LB@ ||||| |||||:|@LB@ GUCCG UUCAGUU@LB@3'-UUU...ACUAC GAAAG...UAG-5'@LB@ | |@LB@ 35 23@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -14.4294 kcal/mol@LB@Unfolding Energy - mRNA 3.35524 kcal/mol@LB@Unfolding Energy - sRNA 6.54796 kcal/mol@LB@@LB@Position - mRNA 112 -- 122@LB@Position - sRNA 24 -- 34@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 150 -- 156@LB@ |
141 |
0.01524 |
0.3575 |
b0133 |
panC |
-11.57 |
0.136229 |
4 -- 24 |
142 -- 162 |
pantothenate synthetase |
|
_____________3_________25\n_____________|_________|\n5'-GGC...ACCGG_________UCCUA...UGC-3'\n______________CGGUCACAU\n______________|:||||||:\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________163_______141\n |
65 -- 71 |
168 -- 174 |
-12.1402 kcal/mol |
2.67616 kcal/mol |
0.276974 kcal/mol |
3 25@LB@ | |@LB@5'-GGC...ACCGG UCCUA...UGC-3'@LB@ CGGUCACAU@LB@ |:||||||:@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 163 141@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -12.1402 kcal/mol@LB@Unfolding Energy - mRNA 2.67616 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 142 -- 162@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 168 -- 174@LB@ |
142 |
0.01524 |
0.3575 |
b0611 |
rna |
-12.80 |
0.076457 |
138 -- 176 |
173 -- 202 |
ribonuclease I |
|
_____________137_____________________________________177\n_____________|_______________________________________|\n5'-UAC...CCCAC________CUUUUUUA______A___GA___________GUAUG...AUU-3'\n______________CUGGCGGG________UGAUUU_AUA__UAGUAUUCAGU\n______________||||||||________||||||_|:|__:|:||:|||||\n______________GACCGCCC________ACUAAA_UGU__GUUAUGAGUCA\n3'-UUU...UAGAC______________________A___G____________GUGUG...UAG-5'\n_____________|_______________________________________|\n_____________203_____________________________________172\n |
170 -- 176 |
173 -- 179 |
-31.7889 kcal/mol |
9.30484 kcal/mol |
14.6886 kcal/mol |
137 177@LB@ | |@LB@5'-UAC...CCCAC CUUUUUUA A GA GUAUG...AUU-3'@LB@ CUGGCGGG UGAUUU AUA UAGUAUUCAGU@LB@ |||||||| |||||| |:| :|:||:|||||@LB@ GACCGCCC ACUAAA UGU GUUAUGAGUCA@LB@3'-UUU...UAGAC A G GUGUG...UAG-5'@LB@ | |@LB@ 203 172@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -31.7889 kcal/mol@LB@Unfolding Energy - mRNA 9.30484 kcal/mol@LB@Unfolding Energy - sRNA 14.6886 kcal/mol@LB@@LB@Position - mRNA 138 -- 176@LB@Position - sRNA 173 -- 202@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 173 -- 179@LB@ |
143 |
0.01531 |
0.3575 |
b1641 |
slyB |
-10.83 |
0.190300 |
158 -- 167 |
83 -- 92 |
outer membrane lipoprotein |
|
_____________157____________________________168\n_____________|______________________________|\n5'-CCG...UCACA_______U______UGAC____AGG_____UUGCG...AAG-3'\n______________UAUGCCA_AUACUU____CAUG___GAUGC\n______________||::|||_|||||:____||::___|||||\n______________AUGUGGU_UAUGAG____GUGU___CUACG\n3'-UUU...CUAAA______________UCA_____GUA_____UCCGU...UAG-5'\n_____________|______________________________|\n_____________93_____________________________82\n |
135 -- 141 |
182 -- 188 |
-20.8318 kcal/mol |
7.22081 kcal/mol |
7.72227 kcal/mol |
157 168@LB@ | |@LB@5'-CCG...UCACA U UGAC AGG UUGCG...AAG-3'@LB@ UAUGCCA AUACUU CAUG GAUGC@LB@ ||::||| |||||: ||:: |||||@LB@ AUGUGGU UAUGAG GUGU CUACG@LB@3'-UUU...CUAAA UCA GUA UCCGU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -20.8318 kcal/mol@LB@Unfolding Energy - mRNA 7.22081 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 158 -- 167@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 182 -- 188@LB@ |
144 |
0.01541 |
0.3575 |
b4555 |
yicS |
-14.57 |
0.033136 |
213 -- 290 |
115 -- 187 |
putative periplasmic protein |
|
_____________212_________________________________________________________________291\n_____________|___________________________________________________________________|\n5'-AUU...CAACG______C______UUU____UUUUUUC__U_____C______UCGUAUACGCCG_____C_______CUCAC...AGA-3'\n______________ACACUA_UGCUUA___UCAC_______GC___AUG_CAGGCA____________AGUCG_CUUUUAG\n______________||||:|_|:||:|___||||_______:|___|||_||||||____________||||:_||||:||\n______________UGUGGU_AUGAGU___AGUG_______UG___UAC_GUCCGU____________UCAGU_GAAAGUC\n3'-UUU...UAAAA______U______C_______________UAC___________________________U_______UUAAC...UAG-5'\n_____________|___________________________________________________________________|\n_____________188_________________________________________________________________114\n |
271 -- 277 |
143 -- 149 |
-34.4495 kcal/mol |
11.6435 kcal/mol |
13.2932 kcal/mol |
212 291@LB@ | |@LB@5'-AUU...CAACG C UUU UUUUUUC U C UCGUAUACGCCG C CUCAC...AGA-3'@LB@ ACACUA UGCUUA UCAC GC AUG CAGGCA AGUCG CUUUUAG@LB@ ||||:| |:||:| |||| :| ||| |||||| ||||: ||||:||@LB@ UGUGGU AUGAGU AGUG UG UAC GUCCGU UCAGU GAAAGUC@LB@3'-UUU...UAAAA U C UAC U UUAAC...UAG-5'@LB@ | |@LB@ 188 114@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -34.4495 kcal/mol@LB@Unfolding Energy - mRNA 11.6435 kcal/mol@LB@Unfolding Energy - sRNA 13.2932 kcal/mol@LB@@LB@Position - mRNA 213 -- 290@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 143 -- 149@LB@ |
145 |
0.01541 |
0.3575 |
b1191 |
cvrA |
-14.91 |
0.028165 |
61 -- 91 |
128 -- 160 |
putative cation/proton antiporter |
|
_____________60___________________________________92\n_____________|____________________________________|\n5'-UGA...CGGGA_____CUC_______GA___________________GUUCU...CUA-3'\n______________AGGCA___AGUUGAC__UUA_____GCGGUCAUCCU\n______________|||||___|||::||__|:|_____||||||||||:\n______________UCCGU___UCAGUUG__AGU_____CGCCAGUAGGG\n3'-UUU...CUACG_______________AA___CUUAA___________UGACG...UAG-5'\n_____________|____________________________________|\n_____________161__________________________________127\n |
85 -- 91 |
128 -- 134 |
-32.547 kcal/mol |
9.03914 kcal/mol |
12.2557 kcal/mol |
60 92@LB@ | |@LB@5'-UGA...CGGGA CUC GA GUUCU...CUA-3'@LB@ AGGCA AGUUGAC UUA GCGGUCAUCCU@LB@ ||||| |||::|| |:| ||||||||||:@LB@ UCCGU UCAGUUG AGU CGCCAGUAGGG@LB@3'-UUU...CUACG AA CUUAA UGACG...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -32.547 kcal/mol@LB@Unfolding Energy - mRNA 9.03914 kcal/mol@LB@Unfolding Energy - sRNA 12.2557 kcal/mol@LB@@LB@Position - mRNA 61 -- 91@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 128 -- 134@LB@ |
146 |
0.01559 |
0.358 |
b4394 |
yjjX |
-8.60 |
0.483218 |
101 -- 114 |
123 -- 137 |
non-canonical purine NTP phosphatase ITPase/XTPase |
|
_____________100__________________________________115\n_____________|____________________________________|\n5'-UGC...AAUCC______A______________UC________UU___CGAGA...CAU-3'\n______________CGCUAA_AUUCAG__GC_CAU__UGCAGGCA__UCA\n______________|:|:||_|:||||__:|_|||__||||||||__|||\n______________GUGGUU_UGAGUC__UG_GUA__ACGUCCGU__AGU\n3'-UUU...AAAAU______A______AG__U___CU________UC___UGAAA...UAG-5'\n_____________|____________________________________|\n_____________138__________________________________122\n |
254 -- 260 |
156 -- 162 |
-32.2061 kcal/mol |
8.98762 kcal/mol |
12.5635 kcal/mol |
100 115@LB@ | |@LB@5'-UGC...AAUCC A UC UU CGAGA...CAU-3'@LB@ CGCUAA AUUCAG GC CAU UGCAGGCA UCA@LB@ |:|:|| |:|||| :| ||| |||||||| |||@LB@ GUGGUU UGAGUC UG GUA ACGUCCGU AGU@LB@3'-UUU...AAAAU A AG U CU UC UGAAA...UAG-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -32.2061 kcal/mol@LB@Unfolding Energy - mRNA 8.98762 kcal/mol@LB@Unfolding Energy - sRNA 12.5635 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 156 -- 162@LB@ |
147 |
0.01564 |
0.358 |
b3153 |
yhbO |
-15.63 |
0.020103 |
154 -- 186 |
72 -- 98 |
stress-resistance protein |
|
_____________153_______________________________187\n_____________|_________________________________|\n5'-GUU...AUCCC__A________AAUU___CUCAU__________AACGC...UUA-3'\n______________CG_UUGUGGGA____CGC_____CCAAUGCAAC\n______________||_||||||||____|||_____||||:|||||\n______________GC_AACACCCU____GCG_____GGUUGCGUUG\n3'-UUU...AAUUA__________________AAUU___________GUCGU...UAG-5'\n_____________|_________________________________|\n_____________99________________________________71\n |
180 -- 186 |
72 -- 78 |
-31.4938 kcal/mol |
8.17407 kcal/mol |
13.9341 kcal/mol |
153 187@LB@ | |@LB@5'-GUU...AUCCC A AAUU CUCAU AACGC...UUA-3'@LB@ CG UUGUGGGA CGC CCAAUGCAAC@LB@ || |||||||| ||| ||||:|||||@LB@ GC AACACCCU GCG GGUUGCGUUG@LB@3'-UUU...AAUUA AAUU GUCGU...UAG-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -15.63 kcal/mol@LB@Hybridization Energy -31.4938 kcal/mol@LB@Unfolding Energy - mRNA 8.17407 kcal/mol@LB@Unfolding Energy - sRNA 13.9341 kcal/mol@LB@@LB@Position - mRNA 154 -- 186@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 72 -- 78@LB@ |
148 |
0.01584 |
0.3602 |
b1822 |
rlmA |
-10.68 |
0.203557 |
148 -- 239 |
111 -- 186 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________147___________240\n_____________|_____________|\n5'-AAG...GCGUG_____C_______UUGCG...GGU-3'\n______________AUUCG_GUUACAC\n______________|:||:_||:||||\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________187___________110\n |
163 -- 169 |
168 -- 174 |
-12.5288 kcal/mol |
1.89227 kcal/mol |
0.283892 kcal/mol |
147 240@LB@ | |@LB@5'-AAG...GCGUG C UUGCG...GGU-3'@LB@ AUUCG GUUACAC@LB@ |:||: ||:||||@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 187 110@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -12.5288 kcal/mol@LB@Unfolding Energy - mRNA 1.89227 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 148 -- 239@LB@Position - sRNA 111 -- 186@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 168 -- 174@LB@ |