142 |
0.02338 |
0.5385 |
b1126 |
potA |
-10.56 |
0.084569 |
277 -- 295 |
14 -- 34 |
spermidine/putrescine ABC transporter ATPase |
|
_____________276___________________296\n_____________|_____________________|\n5'-CAA...CAAAU_______U_____________CAUUC-3'\n______________GCUUUGA_GGU__AAAGAGGU\n______________:|||::|_|||__||||||||\n______________UGAAGUU_CCA__UUUCUCCA\n3'-CGC...GUCAC_______C___AU________CGGCG...AAG-5'\n_____________|_____________________|\n_____________35____________________13\n |
289 -- 295 |
14 -- 20 |
-18.1028 kcal/mol |
4.21038 kcal/mol |
3.33169 kcal/mol |
276 296@LB@ | |@LB@5'-CAA...CAAAU U CAUUC-3'@LB@ GCUUUGA GGU AAAGAGGU@LB@ :|||::| ||| ||||||||@LB@ UGAAGUU CCA UUUCUCCA@LB@3'-CGC...GUCAC C AU CGGCG...AAG-5'@LB@ | |@LB@ 35 13@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -18.1028 kcal/mol@LB@Unfolding Energy - mRNA 4.21038 kcal/mol@LB@Unfolding Energy - sRNA 3.33169 kcal/mol@LB@@LB@Position - mRNA 277 -- 295@LB@Position - sRNA 14 -- 34@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 14 -- 20@LB@ |
38 |
0.006978 |
0.5385 |
b3738 |
atpB |
-10.53 |
0.085759 |
128 -- 143 |
69 -- 84 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________127______________144\n_____________|________________|\n5'-CAU...GAUCG______G_________GCUGG...ACC-3'\n______________UUACGU_GGUUUUGGU\n______________|:||||_||:|||:||\n______________AGUGCA_CCGAAAUCA\n3'-CGC...UUUCA______A_________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
137 -- 143 |
69 -- 75 |
-16.8893 kcal/mol |
5.79988 kcal/mol |
0.563592 kcal/mol |
127 144@LB@ | |@LB@5'-CAU...GAUCG G GCUGG...ACC-3'@LB@ UUACGU GGUUUUGGU@LB@ |:|||| ||:|||:||@LB@ AGUGCA CCGAAAUCA@LB@3'-CGC...UUUCA A AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -16.8893 kcal/mol@LB@Unfolding Energy - mRNA 5.79988 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 128 -- 143@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 69 -- 75@LB@ |
80 |
0.01445 |
0.5385 |
b4257 |
yjgN |
-10.51 |
0.086376 |
202 -- 215 |
65 -- 78 |
DUF898 family inner membrane protein |
|
_____________201____________216\n_____________|______________|\n5'-UUA...UUUUA_____CA_______AAUGA...UGU-3'\n______________UGGCU__AGUUAUU\n______________|||||__|||||||\n______________ACCGA__UCAAUAA\n3'-CGC...GUGCA_____AA_______GCUCA...AAG-5'\n_____________|______________|\n_____________79_____________64\n |
209 -- 215 |
65 -- 71 |
-13.5706 kcal/mol |
2.80573 kcal/mol |
0.256929 kcal/mol |
201 216@LB@ | |@LB@5'-UUA...UUUUA CA AAUGA...UGU-3'@LB@ UGGCU AGUUAUU@LB@ ||||| |||||||@LB@ ACCGA UCAAUAA@LB@3'-CGC...GUGCA AA GCUCA...AAG-5'@LB@ | |@LB@ 79 64@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -13.5706 kcal/mol@LB@Unfolding Energy - mRNA 2.80573 kcal/mol@LB@Unfolding Energy - sRNA 0.256929 kcal/mol@LB@@LB@Position - mRNA 202 -- 215@LB@Position - sRNA 65 -- 78@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 65 -- 71@LB@ |
63 |
0.01271 |
0.5385 |
b3306 |
rpsH |
-10.49 |
0.086924 |
89 -- 100 |
56 -- 67 |
30S ribosomal subunit protein S8 |
|
_____________88___________101\n_____________|____________|\n5'-AGC...CGGAA____________CCGUA...AAG-3'\n______________GUUCGGGUUGAG\n______________:||||:||||||\n______________UAAGCUCAACUC\n3'-CGC...AUCAA____________UUUGA...AAG-5'\n_____________|____________|\n_____________68___________55\n |
94 -- 100 |
56 -- 62 |
-16.8063 kcal/mol |
4.74141 kcal/mol |
1.57281 kcal/mol |
88 101@LB@ | |@LB@5'-AGC...CGGAA CCGUA...AAG-3'@LB@ GUUCGGGUUGAG@LB@ :||||:||||||@LB@ UAAGCUCAACUC@LB@3'-CGC...AUCAA UUUGA...AAG-5'@LB@ | |@LB@ 68 55@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -16.8063 kcal/mol@LB@Unfolding Energy - mRNA 4.74141 kcal/mol@LB@Unfolding Energy - sRNA 1.57281 kcal/mol@LB@@LB@Position - mRNA 89 -- 100@LB@Position - sRNA 56 -- 67@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 56 -- 62@LB@ |
109 |
0.0187 |
0.5385 |
b2616 |
recN |
-10.46 |
0.088138 |
200 -- 208 |
75 -- 83 |
recombination and repair protein |
|
_____________199_______209\n_____________|_________|\n5'-UGA...ACGAC_________ACAAC...CGG-3'\n______________UAUGUUGGC\n______________:|:||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
202 -- 208 |
75 -- 81 |
-13.4657 kcal/mol |
2.51607 kcal/mol |
0.492259 kcal/mol |
199 209@LB@ | |@LB@5'-UGA...ACGAC ACAAC...CGG-3'@LB@ UAUGUUGGC@LB@ :|:||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -13.4657 kcal/mol@LB@Unfolding Energy - mRNA 2.51607 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 200 -- 208@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 75 -- 81@LB@ |
16 |
0.002981 |
0.5385 |
b3428 |
glgP |
-10.45 |
0.088230 |
278 -- 289 |
76 -- 86 |
glycogen phosphorylase |
|
_____________277__________290\n_____________|____________|\n5'-CCA...CUGAU_______A____AAAGG...CGG-3'\n______________GUUUACG_UUGG\n______________|||:|||_||||\n______________CAAGUGC_AACC\n3'-CGC...GUUUU____________GAAAU...AAG-5'\n_____________|____________|\n_____________87___________75\n |
278 -- 284 |
80 -- 86 |
-12.981 kcal/mol |
2.0211 kcal/mol |
0.505081 kcal/mol |
277 290@LB@ | |@LB@5'-CCA...CUGAU A AAAGG...CGG-3'@LB@ GUUUACG UUGG@LB@ |||:||| ||||@LB@ CAAGUGC AACC@LB@3'-CGC...GUUUU GAAAU...AAG-5'@LB@ | |@LB@ 87 75@LB@@LB@@LB@Energy -10.45 kcal/mol@LB@Hybridization Energy -12.981 kcal/mol@LB@Unfolding Energy - mRNA 2.0211 kcal/mol@LB@Unfolding Energy - sRNA 0.505081 kcal/mol@LB@@LB@Position - mRNA 278 -- 289@LB@Position - sRNA 76 -- 86@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 80 -- 86@LB@ |
147 |
0.02477 |
0.5467 |
b3259 |
prmA |
-10.37 |
0.091190 |
111 -- 125 |
72 -- 88 |
methyltransferase for 50S ribosomal subunit protein L11 |
|
_____________110_______________126\n_____________|_________________|\n5'-GCC...CUACU_________________CCUGG...AGG-3'\n______________AAGUUUGC__UGGCUUU\n______________|||||::|__|||||||\n______________UUCAAGUG__ACCGAAA\n3'-CGC...GCGUU________CA_______UCAAU...AAG-5'\n_____________|_________________|\n_____________89________________71\n |
119 -- 125 |
72 -- 78 |
-14.8408 kcal/mol |
3.95141 kcal/mol |
0.517175 kcal/mol |
110 126@LB@ | |@LB@5'-GCC...CUACU CCUGG...AGG-3'@LB@ AAGUUUGC UGGCUUU@LB@ |||||::| |||||||@LB@ UUCAAGUG ACCGAAA@LB@3'-CGC...GCGUU CA UCAAU...AAG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -14.8408 kcal/mol@LB@Unfolding Energy - mRNA 3.95141 kcal/mol@LB@Unfolding Energy - sRNA 0.517175 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 72 -- 78@LB@ |
36 |
0.006672 |
0.5385 |
b3956 |
ppc |
-10.31 |
0.093393 |
270 -- 282 |
76 -- 88 |
phosphoenolpyruvate carboxylase |
|
_____________269___________283\n_____________|_____________|\n5'-CUU...CCAUC___GA________GAGAA...AAC-3'\n______________AAG__UGCGUUGG\n______________|||__::||||||\n______________UUC__GUGCAACC\n3'-CGC...GCGUU___AA________GAAAU...AAG-5'\n_____________|_____________|\n_____________89____________75\n |
276 -- 282 |
76 -- 82 |
-12.0501 kcal/mol |
1.22517 kcal/mol |
0.512479 kcal/mol |
269 283@LB@ | |@LB@5'-CUU...CCAUC GA GAGAA...AAC-3'@LB@ AAG UGCGUUGG@LB@ ||| ::||||||@LB@ UUC GUGCAACC@LB@3'-CGC...GCGUU AA GAAAU...AAG-5'@LB@ | |@LB@ 89 75@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -12.0501 kcal/mol@LB@Unfolding Energy - mRNA 1.22517 kcal/mol@LB@Unfolding Energy - sRNA 0.512479 kcal/mol@LB@@LB@Position - mRNA 270 -- 282@LB@Position - sRNA 76 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 76 -- 82@LB@ |
195 |
0.03428 |
0.5559 |
b0434 |
yajG |
-10.30 |
0.093744 |
131 -- 149 |
66 -- 84 |
putative lipoprotein |
|
_____________130__________________150\n_____________|____________________|\n5'-UGG...UCCCC___C_______AAU______GAUGG...UGC-3'\n______________UCG_CGUUGGC____GUUAU\n______________||:_|||||||____|||||\n______________AGU_GCAACCG____CAAUA\n3'-CGC...UUUCA___________AAAU_____AGCUC...AAG-5'\n_____________|____________________|\n_____________85___________________65\n |
135 -- 141 |
75 -- 81 |
-17.0927 kcal/mol |
6.21917 kcal/mol |
0.5705 kcal/mol |
130 150@LB@ | |@LB@5'-UGG...UCCCC C AAU GAUGG...UGC-3'@LB@ UCG CGUUGGC GUUAU@LB@ ||: ||||||| |||||@LB@ AGU GCAACCG CAAUA@LB@3'-CGC...UUUCA AAAU AGCUC...AAG-5'@LB@ | |@LB@ 85 65@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -17.0927 kcal/mol@LB@Unfolding Energy - mRNA 6.21917 kcal/mol@LB@Unfolding Energy - sRNA 0.5705 kcal/mol@LB@@LB@Position - mRNA 131 -- 149@LB@Position - sRNA 66 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 75 -- 81@LB@ |
47 |
0.009854 |
0.5385 |
b3408 |
feoA |
-10.27 |
0.095129 |
159 -- 188 |
52 -- 83 |
ferrous iron transporter protein A |
|
_____________158_________________________________189\n_____________|___________________________________|\n5'-AGC...CGCCC____A_______________C___UAA________AAGUA...CUG-3'\n______________CAUG__GGU___AGUUA_UC_AGU___UGAGAAAC\n______________||:|__||:___|||||_||_|||___||||||||\n______________GUGC__CCG___UCAAU_AG_UCA___ACUCUUUG\n3'-CGC...UUCAA____AA___AAA_____A__C______________AGAGC...AAG-5'\n_____________|___________________________________|\n_____________84__________________________________51\n |
182 -- 188 |
52 -- 58 |
-20.9255 kcal/mol |
6.25891 kcal/mol |
4.4004 kcal/mol |
158 189@LB@ | |@LB@5'-AGC...CGCCC A C UAA AAGUA...CUG-3'@LB@ CAUG GGU AGUUA UC AGU UGAGAAAC@LB@ ||:| ||: ||||| || ||| ||||||||@LB@ GUGC CCG UCAAU AG UCA ACUCUUUG@LB@3'-CGC...UUCAA AA AAA A C AGAGC...AAG-5'@LB@ | |@LB@ 84 51@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -20.9255 kcal/mol@LB@Unfolding Energy - mRNA 6.25891 kcal/mol@LB@Unfolding Energy - sRNA 4.4004 kcal/mol@LB@@LB@Position - mRNA 159 -- 188@LB@Position - sRNA 52 -- 83@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 52 -- 58@LB@ |