146 |
0.0246 |
0.5467 |
b2813 |
mltA |
-8.67 |
0.177423 |
203 -- 222 |
69 -- 90 |
membrane-bound lytic murein transglycosylase A |
|
_____________202____________________223\n_____________|______________________|\n5'-UGC...ACAAU_____G_________G_AA___ACCUU...AAG-3'\n______________GAAAG___ACGUUGG_U__AGU\n______________:||||___|||||||_|__|||\n______________UUUUC___UGCAACC_A__UCA\n3'-CGC...AGGCG_____AAG_______G_AA___AUAAG...AAG-5'\n_____________|______________________|\n_____________91_____________________68\n |
209 -- 215 |
76 -- 82 |
-14.1188 kcal/mol |
4.87564 kcal/mol |
0.572281 kcal/mol |
202 223@LB@ | |@LB@5'-UGC...ACAAU G G AA ACCUU...AAG-3'@LB@ GAAAG ACGUUGG U AGU@LB@ :|||| ||||||| | |||@LB@ UUUUC UGCAACC A UCA@LB@3'-CGC...AGGCG AAG G AA AUAAG...AAG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -14.1188 kcal/mol@LB@Unfolding Energy - mRNA 4.87564 kcal/mol@LB@Unfolding Energy - sRNA 0.572281 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 76 -- 82@LB@ |
72 |
0.0135 |
0.5385 |
b1117 |
lolD |
-8.66 |
0.177865 |
184 -- 202 |
66 -- 83 |
outer membrane-specific lipoprotein transporter subunit |
|
_____________183_________________203\n_____________|___________________|\n5'-GCU...CAACC___UGA_______C_____GAAUA...GCG-3'\n______________CGC___GGCUUUA_GUUAU\n______________|:|___|||||||_|||||\n______________GUG___CCGAAAU_CAAUA\n3'-CGC...UUCAA___CAA_____________AGCUC...AAG-5'\n_____________|___________________|\n_____________84__________________65\n |
190 -- 196 |
71 -- 77 |
-15.2298 kcal/mol |
6.00943 kcal/mol |
0.556032 kcal/mol |
183 203@LB@ | |@LB@5'-GCU...CAACC UGA C GAAUA...GCG-3'@LB@ CGC GGCUUUA GUUAU@LB@ |:| ||||||| |||||@LB@ GUG CCGAAAU CAAUA@LB@3'-CGC...UUCAA CAA AGCUC...AAG-5'@LB@ | |@LB@ 84 65@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -15.2298 kcal/mol@LB@Unfolding Energy - mRNA 6.00943 kcal/mol@LB@Unfolding Energy - sRNA 0.556032 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 66 -- 83@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 71 -- 77@LB@ |
138 |
0.02324 |
0.5385 |
b1826 |
mgrB |
-8.64 |
0.179438 |
205 -- 238 |
60 -- 90 |
regulatory peptide for PhoPQ feedback inhibition |
|
_____________204__________________________________239\n_____________|____________________________________|\n5'-UAC...AGUGA___________A___G_CGUUC__________U___GUUGG...AAU-3'\n______________AAAAGUUU_CG_UGG_U_____UGGUUGU_CG_GGU\n______________|||||||:_||_|||_|_____|:|||:|_||_:||\n______________UUUUCAAG_GC_ACC_A_____AUCAAUA_GC_UCA\n3'-CGC...AGGCG________U__A___G_A___________A______ACUCU...AAG-5'\n_____________|____________________________________|\n_____________91___________________________________59\n |
226 -- 232 |
66 -- 72 |
-16.3224 kcal/mol |
5.97183 kcal/mol |
1.70935 kcal/mol |
204 239@LB@ | |@LB@5'-UAC...AGUGA A G CGUUC U GUUGG...AAU-3'@LB@ AAAAGUUU CG UGG U UGGUUGU CG GGU@LB@ |||||||: || ||| | |:|||:| || :||@LB@ UUUUCAAG GC ACC A AUCAAUA GC UCA@LB@3'-CGC...AGGCG U A G A A ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -16.3224 kcal/mol@LB@Unfolding Energy - mRNA 5.97183 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 66 -- 72@LB@ |
136 |
0.02309 |
0.5385 |
b3223 |
nanE |
-8.63 |
0.180292 |
34 -- 47 |
74 -- 86 |
putative N-acetylmannosamine-6-P epimerase |
|
_____________33_____________48\n_____________|______________|\n5'-AUC...CUCGC_____G________GCGCC...AAA-3'\n______________GUUCA_CGUUGGUU\n______________|||||_||||||:|\n______________CAAGU_GCAACCGA\n3'-CGC...GUUUU______________AAUCA...AAG-5'\n_____________|______________|\n_____________87_____________73\n |
41 -- 47 |
74 -- 80 |
-15.9355 kcal/mol |
6.79344 kcal/mol |
0.513318 kcal/mol |
33 48@LB@ | |@LB@5'-AUC...CUCGC G GCGCC...AAA-3'@LB@ GUUCA CGUUGGUU@LB@ ||||| ||||||:|@LB@ CAAGU GCAACCGA@LB@3'-CGC...GUUUU AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -15.9355 kcal/mol@LB@Unfolding Energy - mRNA 6.79344 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 34 -- 47@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 74 -- 80@LB@ |
103 |
0.01739 |
0.5385 |
b0945 |
pyrD |
-8.62 |
0.180746 |
193 -- 204 |
79 -- 90 |
dihydro-orotate oxidase FMN-linked |
|
_____________192__________205\n_____________|____________|\n5'-UGU...UCCAG____________ACUAC...CGU-3'\n______________GAGAGUUCAUGU\n______________:|:||||||:||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
198 -- 204 |
79 -- 85 |
-13.8118 kcal/mol |
4.6828 kcal/mol |
0.506924 kcal/mol |
192 205@LB@ | |@LB@5'-UGU...UCCAG ACUAC...CGU-3'@LB@ GAGAGUUCAUGU@LB@ :|:||||||:||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -13.8118 kcal/mol@LB@Unfolding Energy - mRNA 4.6828 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 193 -- 204@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 79 -- 85@LB@ |
153 |
0.02565 |
0.5485 |
b2764 |
cysJ |
-8.62 |
0.180864 |
16 -- 26 |
74 -- 84 |
sulfite reductase alpha subunit flavoprotein |
|
_____________15__________27\n_____________|___________|\n5'-UUC...UUUCA___G_______AAUCU...UUG-3'\n______________UUA_GUUGGUU\n______________|:|_|||||:|\n______________AGU_CAACCGA\n3'-CGC...UUUCA___G_______AAUCA...AAG-5'\n_____________|___________|\n_____________85__________73\n |
20 -- 26 |
74 -- 80 |
-11.948 kcal/mol |
2.81948 kcal/mol |
0.508159 kcal/mol |
15 27@LB@ | |@LB@5'-UUC...UUUCA G AAUCU...UUG-3'@LB@ UUA GUUGGUU@LB@ |:| |||||:|@LB@ AGU CAACCGA@LB@3'-CGC...UUUCA G AAUCA...AAG-5'@LB@ | |@LB@ 85 73@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -11.948 kcal/mol@LB@Unfolding Energy - mRNA 2.81948 kcal/mol@LB@Unfolding Energy - sRNA 0.508159 kcal/mol@LB@@LB@Position - mRNA 16 -- 26@LB@Position - sRNA 74 -- 84@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 74 -- 80@LB@ |
158 |
0.02721 |
0.5559 |
b1724 |
ydiZ |
-8.58 |
0.183444 |
272 -- 279 |
57 -- 64 |
uncharacterized protein |
|
_____________271______280\n_____________|________|\n5'-UUU...AUUAA________AUAAU...ACG-3'\n______________CGAGUUGA\n______________||||||||\n______________GCUCAACU\n3'-CGC...AAUAA________CUUUG...AAG-5'\n_____________|________|\n_____________65_______56\n |
273 -- 279 |
57 -- 63 |
-11.4752 kcal/mol |
1.7639 kcal/mol |
1.12823 kcal/mol |
271 280@LB@ | |@LB@5'-UUU...AUUAA AUAAU...ACG-3'@LB@ CGAGUUGA@LB@ ||||||||@LB@ GCUCAACU@LB@3'-CGC...AAUAA CUUUG...AAG-5'@LB@ | |@LB@ 65 56@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -11.4752 kcal/mol@LB@Unfolding Energy - mRNA 1.7639 kcal/mol@LB@Unfolding Energy - sRNA 1.12823 kcal/mol@LB@@LB@Position - mRNA 272 -- 279@LB@Position - sRNA 57 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 57 -- 63@LB@ |
192 |
0.03364 |
0.5559 |
b2333 |
yfcP |
-8.48 |
0.190877 |
22 -- 36 |
61 -- 77 |
putative fimbrial-like adhesin protein |
|
_____________21________________37\n_____________|_________________|\n5'-GCA...UACCC_________A_______CUUCA...AUU-3'\n______________GGUUUUGGU___UCGAG\n______________||:|||:||___|||||\n______________CCGAAAUCA___AGCUC\n3'-CGC...UGCAA_________AUA_____AACUC...AAG-5'\n_____________|_________________|\n_____________78________________60\n |
23 -- 29 |
70 -- 76 |
-16.4218 kcal/mol |
7.14733 kcal/mol |
0.796269 kcal/mol |
21 37@LB@ | |@LB@5'-GCA...UACCC A CUUCA...AUU-3'@LB@ GGUUUUGGU UCGAG@LB@ ||:|||:|| |||||@LB@ CCGAAAUCA AGCUC@LB@3'-CGC...UGCAA AUA AACUC...AAG-5'@LB@ | |@LB@ 78 60@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -16.4218 kcal/mol@LB@Unfolding Energy - mRNA 7.14733 kcal/mol@LB@Unfolding Energy - sRNA 0.796269 kcal/mol@LB@@LB@Position - mRNA 22 -- 36@LB@Position - sRNA 61 -- 77@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 70 -- 76@LB@ |
57 |
0.01133 |
0.5385 |
b0026 |
ileS |
-8.45 |
0.192830 |
289 -- 299 |
74 -- 83 |
isoleucyl-tRNA synthetase |
|
_____________288_________300\n_____________|___________|\n5'-AUG...GCUGG________A__G-3'\n______________CGCGUUGG_CU\n______________|:||||||_||\n______________GUGCAACC_GA\n3'-CGC...UUCAA___________AAUCA...AAG-5'\n_____________|___________|\n_____________84__________73\n |
290 -- 296 |
76 -- 82 |
-13.1796 kcal/mol |
4.23376 kcal/mol |
0.494551 kcal/mol |
288 300@LB@ | |@LB@5'-AUG...GCUGG A G-3'@LB@ CGCGUUGG CU@LB@ |:|||||| ||@LB@ GUGCAACC GA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.1796 kcal/mol@LB@Unfolding Energy - mRNA 4.23376 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 289 -- 299@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 76 -- 82@LB@ |
199 |
0.03481 |
0.5559 |
b0407 |
yajC |
-8.41 |
0.195839 |
88 -- 104 |
15 -- 30 |
SecYEG protein translocase auxillary subunit |
|
_____________87________________105\n_____________|_________________|\n5'-UCU...UUACG_____CUAUU_______GUAAA...UUU-3'\n______________CAAGG_____GAAGAGG\n______________|||||_____:||||||\n______________GUUCC_____UUUCUCC\n3'-CGC...CUGAA_____CAAU________ACGGC...AAG-5'\n_____________|_________________|\n_____________31________________14\n |
98 -- 104 |
15 -- 21 |
-15.1331 kcal/mol |
3.4367 kcal/mol |
3.28624 kcal/mol |
87 105@LB@ | |@LB@5'-UCU...UUACG CUAUU GUAAA...UUU-3'@LB@ CAAGG GAAGAGG@LB@ ||||| :||||||@LB@ GUUCC UUUCUCC@LB@3'-CGC...CUGAA CAAU ACGGC...AAG-5'@LB@ | |@LB@ 31 14@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -15.1331 kcal/mol@LB@Unfolding Energy - mRNA 3.4367 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 88 -- 104@LB@Position - sRNA 15 -- 30@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 15 -- 21@LB@ |