| 67 |
0.003475 |
0.1645 |
b0416 |
nusB |
-6.41 |
0.154688 |
140 -- 154 |
27 -- 40 |
transcription antitermination protein |
|
_____________139_____________155\n_____________|_______________|\n5'-AAG...UGACC__________U____AAUGU...AGU-3'\n______________GCGCUUGAAA_GAUU\n______________||:|||:|||_:|||\n______________CGUGAAUUUU_UUAA\n3'-UUU...UUCUU_______________GCAAU...CAA-5'\n_____________|_______________|\n_____________41______________26\n |
142 -- 148 |
32 -- 38 |
-12.213 kcal/mol |
4.16264 kcal/mol |
1.6425 kcal/mol |
139 155@LB@ | |@LB@5'-AAG...UGACC U AAUGU...AGU-3'@LB@ GCGCUUGAAA GAUU@LB@ ||:|||:||| :|||@LB@ CGUGAAUUUU UUAA@LB@3'-UUU...UUCUU GCAAU...CAA-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 4.16264 kcal/mol@LB@Unfolding Energy - sRNA 1.6425 kcal/mol@LB@@LB@Position - mRNA 140 -- 154@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 149 |
0.01515 |
0.3274 |
b4196 |
ulaD |
-9.50 |
0.022893 |
140 -- 153 |
36 -- 49 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________139____________154\n_____________|______________|\n5'-CGA...GUACC______________GGAUC...AAG-3'\n______________GAGCAGGAAGUACU\n______________:||||:||||:|||\n______________UUCGUUCUUCGUGA\n3'-UUU...ACGAA______________AUUUU...CAA-5'\n_____________|______________|\n_____________50_____________35\n |
147 -- 153 |
36 -- 42 |
-21.0071 kcal/mol |
5.47534 kcal/mol |
6.03645 kcal/mol |
139 154@LB@ | |@LB@5'-CGA...GUACC GGAUC...AAG-3'@LB@ GAGCAGGAAGUACU@LB@ :||||:||||:|||@LB@ UUCGUUCUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -21.0071 kcal/mol@LB@Unfolding Energy - mRNA 5.47534 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 140 -- 153@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 169 |
0.01902 |
0.3625 |
b0858 |
ybjO |
-5.59 |
0.239654 |
140 -- 156 |
25 -- 43 |
DUF2593 family inner membrane protein |
|
_____________139__________________157\n_____________|____________________|\n5'-AUG...UGGCU____A_______________CCAAC...UUA-3'\n______________GAAG_CACU___AAAAUUUG\n______________||||_||||___||||||:|\n______________CUUC_GUGA___UUUUAAGC\n3'-UUU...UCGUU_________AUU________AAUGU...CAA-5'\n_____________|____________________|\n_____________44___________________24\n |
150 -- 156 |
25 -- 31 |
-11.6219 kcal/mol |
2.26879 kcal/mol |
3.76226 kcal/mol |
139 157@LB@ | |@LB@5'-AUG...UGGCU A CCAAC...UUA-3'@LB@ GAAG CACU AAAAUUUG@LB@ |||| |||| ||||||:|@LB@ CUUC GUGA UUUUAAGC@LB@3'-UUU...UCGUU AUU AAUGU...CAA-5'@LB@ | |@LB@ 44 24@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -11.6219 kcal/mol@LB@Unfolding Energy - mRNA 2.26879 kcal/mol@LB@Unfolding Energy - sRNA 3.76226 kcal/mol@LB@@LB@Position - mRNA 140 -- 156@LB@Position - sRNA 25 -- 43@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 49 |
0.002267 |
0.1465 |
b0592 |
fepB |
-6.35 |
0.159662 |
143 -- 160 |
24 -- 40 |
ferrienterobactin ABC transporter periplasmic binding protein |
|
_____________142________________161\n_____________|__________________|\n5'-AUA...AUUGU______UGUC________CAUUA...UUA-3'\n______________GCGCUU____GAAUUUGU\n______________||:|||____:||||:||\n______________CGUGAA____UUUAAGCA\n3'-UUU...UUCUU______UUU_________AUGUG...CAA-5'\n_____________|__________________|\n_____________41_________________23\n |
154 -- 160 |
24 -- 30 |
-12.773 kcal/mol |
4.77335 kcal/mol |
1.64869 kcal/mol |
142 161@LB@ | |@LB@5'-AUA...AUUGU UGUC CAUUA...UUA-3'@LB@ GCGCUU GAAUUUGU@LB@ ||:||| :||||:||@LB@ CGUGAA UUUAAGCA@LB@3'-UUU...UUCUU UUU AUGUG...CAA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.35 kcal/mol@LB@Hybridization Energy -12.773 kcal/mol@LB@Unfolding Energy - mRNA 4.77335 kcal/mol@LB@Unfolding Energy - sRNA 1.64869 kcal/mol@LB@@LB@Position - mRNA 143 -- 160@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 60 |
0.00317 |
0.1645 |
b0466 |
ybaM |
-6.37 |
0.157728 |
143 -- 158 |
25 -- 40 |
DUF2496 family protein |
|
_____________142_______________159\n_____________|_________________|\n5'-GCA...GCCAU_____GG__________AAAAC...CGC-3'\n______________GCGCU__AAAAAAU_CG\n______________||:||__|||||||_||\n______________CGUGA__UUUUUUA_GC\n3'-UUU...UUCUU_____A________A__AAUGU...CAA-5'\n_____________|_________________|\n_____________41________________24\n |
150 -- 156 |
28 -- 34 |
-11.3444 kcal/mol |
3.32327 kcal/mol |
1.64821 kcal/mol |
142 159@LB@ | |@LB@5'-GCA...GCCAU GG AAAAC...CGC-3'@LB@ GCGCU AAAAAAU CG@LB@ ||:|| ||||||| ||@LB@ CGUGA UUUUUUA GC@LB@3'-UUU...UUCUU A A AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -11.3444 kcal/mol@LB@Unfolding Energy - mRNA 3.32327 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 143 -- 158@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 110 |
0.009505 |
0.2693 |
b0632 |
dacA |
-12.82 |
0.002052 |
146 -- 175 |
26 -- 57 |
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) |
|
_____________145______________________________176\n_____________|________________________________|\n5'-CCU...AGUGC_______AU______________UUUU_____CAUCA...AUA-3'\n______________AUUUGCU__AGUAGG__GCACUU____AAUUC\n______________|:|||||__||:|:|__||||||____|||||\n______________UGAACGA__UCGUUC__CGUGAA____UUAAG\n3'-UUU...UACUU_______AU______UU______UUUU_____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
146 -- 152 |
51 -- 57 |
-23.8315 kcal/mol |
4.73353 kcal/mol |
6.27605 kcal/mol |
145 176@LB@ | |@LB@5'-CCU...AGUGC AU UUUU CAUCA...AUA-3'@LB@ AUUUGCU AGUAGG GCACUU AAUUC@LB@ |:||||| ||:|:| |||||| |||||@LB@ UGAACGA UCGUUC CGUGAA UUAAG@LB@3'-UUU...UACUU AU UU UUUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -12.82 kcal/mol@LB@Hybridization Energy -23.8315 kcal/mol@LB@Unfolding Energy - mRNA 4.73353 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 146 -- 175@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 77 |
0.004637 |
0.1935 |
b0407 |
yajC |
-7.39 |
0.087827 |
147 -- 158 |
37 -- 48 |
SecYEG protein translocase auxillary subunit |
|
_____________146__________159\n_____________|____________|\n5'-UCU...UCAGG____________CACCU...UUU-3'\n______________GGCGAGAAGUAC\n______________:||:|||||:||\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
152 -- 158 |
37 -- 43 |
-17.5904 kcal/mol |
4.37033 kcal/mol |
5.83483 kcal/mol |
146 159@LB@ | |@LB@5'-UCU...UCAGG CACCU...UUU-3'@LB@ GGCGAGAAGUAC@LB@ :||:|||||:||@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -7.39 kcal/mol@LB@Hybridization Energy -17.5904 kcal/mol@LB@Unfolding Energy - mRNA 4.37033 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 147 -- 158@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 146 |
0.01469 |
0.3231 |
b0026 |
ileS |
-7.82 |
0.067581 |
147 -- 206 |
2 -- 59 |
isoleucyl-tRNA synthetase |
|
_____________146_____________________________________________________________207\n_____________|_______________________________________________________________|\n5'-AUG...UAACA____CG________CU_UUAU___AUCAAACC_____A__GA______A___________A__GACUA...CUG-3'\n______________AAAC__GCUUAAGC__G____GUA________GAAAU_CG____ACCG__GAAUCUGAUG_GU\n______________||||__||||||||__|____|:|________:||||_||____|||:__:|||||||||_||\n______________UUUG__CGAAUUCG__C____CGU________UUUUA_GC____UGGU__UUUAGACUAC_CA\n3'-UUU...CCUAC____AA________UU_UU_____GAAUU________A__AAUG____CC__________A__A-5'\n_____________|_______________________________________________________________|\n_____________60______________________________________________________________1\n |
197 -- 203 |
5 -- 11 |
-33.6314 kcal/mol |
11.9684 kcal/mol |
13.8468 kcal/mol |
146 207@LB@ | |@LB@5'-AUG...UAACA CG CU UUAU AUCAAACC A GA A A GACUA...CUG-3'@LB@ AAAC GCUUAAGC G GUA GAAAU CG ACCG GAAUCUGAUG GU@LB@ |||| |||||||| | |:| :|||| || |||: :||||||||| ||@LB@ UUUG CGAAUUCG C CGU UUUUA GC UGGU UUUAGACUAC CA@LB@3'-UUU...CCUAC AA UU UU GAAUU A AAUG CC A A-5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -33.6314 kcal/mol@LB@Unfolding Energy - mRNA 11.9684 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 147 -- 206@LB@Position - sRNA 2 -- 59@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 5 -- 11@LB@ |
