| 97 |
0.007216 |
0.239 |
b2021 |
hisC |
-5.42 |
0.261518 |
59 -- 66 |
37 -- 44 |
histidinol-phosphate aminotransferase |
|
_____________58_______67\n_____________|________|\n5'-GUU...UUUCC________AUGAC...GGC-3'\n______________AGAAGCGC\n______________||||||:|\n______________UCUUCGUG\n3'-UUU...UUCGU________AAUUU...CAA-5'\n_____________|________|\n_____________45_______36\n |
60 -- 66 |
37 -- 43 |
-11.6623 kcal/mol |
1.85203 kcal/mol |
4.39141 kcal/mol |
58 67@LB@ | |@LB@5'-GUU...UUUCC AUGAC...GGC-3'@LB@ AGAAGCGC@LB@ ||||||:|@LB@ UCUUCGUG@LB@3'-UUU...UUCGU AAUUU...CAA-5'@LB@ | |@LB@ 45 36@LB@@LB@@LB@Energy -5.42 kcal/mol@LB@Hybridization Energy -11.6623 kcal/mol@LB@Unfolding Energy - mRNA 1.85203 kcal/mol@LB@Unfolding Energy - sRNA 4.39141 kcal/mol@LB@@LB@Position - mRNA 59 -- 66@LB@Position - sRNA 37 -- 44@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 11 |
0.0001294 |
0.03789 |
b3687 |
ibpA |
-8.25 |
0.051487 |
69 -- 81 |
26 -- 38 |
heat shock chaperone |
|
_____________68____________82\n_____________|_____________|\n5'-AAC...AUAAG_____________AUUUC...GCU-3'\n______________GCUUGAAAAGUUC\n______________:|||:||||:|||\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
75 -- 81 |
26 -- 32 |
-13.0918 kcal/mol |
3.40592 kcal/mol |
1.43364 kcal/mol |
68 82@LB@ | |@LB@5'-AAC...AUAAG AUUUC...GCU-3'@LB@ GCUUGAAAAGUUC@LB@ :|||:||||:|||@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -13.0918 kcal/mol@LB@Unfolding Energy - mRNA 3.40592 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 69 -- 81@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 78 |
0.004685 |
0.1935 |
b3905 |
rhaS |
-7.96 |
0.061746 |
70 -- 86 |
26 -- 40 |
transcriptional activator of rhaBAD and rhaT |
|
_____________69________________87\n_____________|_________________|\n5'-UGG...UCACC______CCU________ACGCU...AUG-3'\n______________GCAUUU___GAAAAUUC\n______________|||:||___:|||||||\n______________CGUGAA___UUUUUAAG\n3'-UUU...UUCUU______U__________CAAUG...CAA-5'\n_____________|_________________|\n_____________41________________25\n |
80 -- 86 |
26 -- 32 |
-11.6625 kcal/mol |
2.05222 kcal/mol |
1.64811 kcal/mol |
69 87@LB@ | |@LB@5'-UGG...UCACC CCU ACGCU...AUG-3'@LB@ GCAUUU GAAAAUUC@LB@ |||:|| :|||||||@LB@ CGUGAA UUUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -11.6625 kcal/mol@LB@Unfolding Energy - mRNA 2.05222 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 70 -- 86@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 50 |
0.002273 |
0.1465 |
b4159 |
mscM |
-6.32 |
0.162358 |
72 -- 90 |
16 -- 34 |
mechanosensitive channel protein miniconductance |
|
_____________71__________________91\n_____________|___________________|\n5'-AAG...CUACC____CC_____________ACGCU...AGC-3'\n______________GAAA__UUUGUUACGCCAG\n______________:|||__||:|||||:||||\n______________UUUU__AAGCAAUGUGGUC\n3'-UUU...GUGAA____UU_____________CUUUA...CAA-5'\n_____________|___________________|\n_____________35__________________15\n |
84 -- 90 |
16 -- 22 |
-19.9467 kcal/mol |
4.98786 kcal/mol |
8.63814 kcal/mol |
71 91@LB@ | |@LB@5'-AAG...CUACC CC ACGCU...AGC-3'@LB@ GAAA UUUGUUACGCCAG@LB@ :||| ||:|||||:||||@LB@ UUUU AAGCAAUGUGGUC@LB@3'-UUU...GUGAA UU CUUUA...CAA-5'@LB@ | |@LB@ 35 15@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -19.9467 kcal/mol@LB@Unfolding Energy - mRNA 4.98786 kcal/mol@LB@Unfolding Energy - sRNA 8.63814 kcal/mol@LB@@LB@Position - mRNA 72 -- 90@LB@Position - sRNA 16 -- 34@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 35 |
0.001338 |
0.121 |
b0405 |
queA |
-9.92 |
0.017135 |
73 -- 106 |
26 -- 60 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________72____________________________________107\n_____________|_____________________________________|\n5'-GGG...UCCGC_____GG___A__U_____U_________________AUCGA...GGC-3'\n______________GAGAU__GCU_AA_GCAGG_GAGC___UAAAAAAUUC\n______________||:|:__|||_||_|||:|_:|||___||||||||||\n______________CUUUG__CGA_UU_CGUUC_UUCG___AUUUUUUAAG\n3'-UUU...CCCUA_____AA___A_____________UGA__________CAAUG...CAA-5'\n_____________|_____________________________________|\n_____________61____________________________________25\n |
100 -- 106 |
26 -- 32 |
-25.4572 kcal/mol |
9.25896 kcal/mol |
6.27609 kcal/mol |
72 107@LB@ | |@LB@5'-GGG...UCCGC GG A U U AUCGA...GGC-3'@LB@ GAGAU GCU AA GCAGG GAGC UAAAAAAUUC@LB@ ||:|: ||| || |||:| :||| ||||||||||@LB@ CUUUG CGA UU CGUUC UUCG AUUUUUUAAG@LB@3'-UUU...CCCUA AA A UGA CAAUG...CAA-5'@LB@ | |@LB@ 61 25@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -25.4572 kcal/mol@LB@Unfolding Energy - mRNA 9.25896 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 73 -- 106@LB@Position - sRNA 26 -- 60@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 1 |
4.307e-10 |
1.387e-06 |
b2741 |
rpoS |
-17.23 |
0.000044 |
75 -- 104 |
10 -- 40 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________74______________________________105\n_____________|_______________________________|\n5'-CGG...CGCUU______U______________AG________CGUAA...AGG-3'\n______________GCAUUU__GAAAUUCGUUACA__GGGAAAUC\n______________|||:||__:||||||||||||__:|||||||\n______________CGUGAA__UUUUAAGCAAUGU__UCCUUUAG\n3'-UUU...UUCUU______UU_____________GG________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
98 -- 104 |
10 -- 16 |
-32.4258 kcal/mol |
5.97429 kcal/mol |
9.22048 kcal/mol |
74 105@LB@ | |@LB@5'-CGG...CGCUU U AG CGUAA...AGG-3'@LB@ GCAUUU GAAAUUCGUUACA GGGAAAUC@LB@ |||:|| :|||||||||||| :|||||||@LB@ CGUGAA UUUUAAGCAAUGU UCCUUUAG@LB@3'-UUU...UUCUU UU GG ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -32.4258 kcal/mol@LB@Unfolding Energy - mRNA 5.97429 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 75 -- 104@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 122 |
0.01076 |
0.2828 |
b1908 |
yecA |
-7.65 |
0.074805 |
79 -- 96 |
18 -- 40 |
UPF0149 family protein |
|
_____________78_______________________97\n_____________|________________________|\n5'-UAC...UGCCU__A_____________________CUCCU...UGG-3'\n______________GC_ACUUG______UCGUUACACC\n______________||_||||:______||||||||||\n______________CG_UGAAU______AGCAAUGUGG\n3'-UUU...UUCUU________UUUUUA__________UCCUU...CAA-5'\n_____________|________________________|\n_____________41_______________________17\n |
90 -- 96 |
18 -- 24 |
-19.1188 kcal/mol |
2.30438 kcal/mol |
9.1639 kcal/mol |
78 97@LB@ | |@LB@5'-UAC...UGCCU A CUCCU...UGG-3'@LB@ GC ACUUG UCGUUACACC@LB@ || ||||: ||||||||||@LB@ CG UGAAU AGCAAUGUGG@LB@3'-UUU...UUCUU UUUUUA UCCUU...CAA-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -19.1188 kcal/mol@LB@Unfolding Energy - mRNA 2.30438 kcal/mol@LB@Unfolding Energy - sRNA 9.1639 kcal/mol@LB@@LB@Position - mRNA 79 -- 96@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 76 |
0.004539 |
0.1924 |
b1722 |
ydiY |
-10.86 |
0.008894 |
80 -- 126 |
13 -- 55 |
acid-inducible putative outer membrane protein |
|
_____________79_______________________________________________127\n_____________|________________________________________________|\n5'-UAA...AUACA__________UAUUC___C___UUUAU__________CUUU_______CGCUA...UGG-3'\n______________UUGC_UAAGU_____GCG_CUU_____AAUUCGUUAC____CCAGGGA\n______________||||_||||:_____||:_|||_____||||||||||____|||||:|\n______________AACG_AUUCG_____CGU_GAA_____UUAAGCAAUG____GGUCCUU\n3'-UUU...CUUUG____A_____UUCUU_______UUUU___________U__________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________56_______________________________________________12\n |
109 -- 115 |
21 -- 27 |
-32.5898 kcal/mol |
7.90727 kcal/mol |
13.8238 kcal/mol |
79 127@LB@ | |@LB@5'-UAA...AUACA UAUUC C UUUAU CUUU CGCUA...UGG-3'@LB@ UUGC UAAGU GCG CUU AAUUCGUUAC CCAGGGA@LB@ |||| ||||: ||: ||| |||||||||| |||||:|@LB@ AACG AUUCG CGU GAA UUAAGCAAUG GGUCCUU@LB@3'-UUU...CUUUG A UUCUU UUUU U UAGAC...CAA-5'@LB@ | |@LB@ 56 12@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -32.5898 kcal/mol@LB@Unfolding Energy - mRNA 7.90727 kcal/mol@LB@Unfolding Energy - sRNA 13.8238 kcal/mol@LB@@LB@Position - mRNA 80 -- 126@LB@Position - sRNA 13 -- 55@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 170 |
0.01916 |
0.363 |
b1202 |
ycgV |
-6.78 |
0.125661 |
82 -- 88 |
39 -- 45 |
putative adhesin |
b2647 |
_____________81______89\n_____________|_______|\n5'-ACU...UCUCU_______UCAUC...UUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
82 -- 88 |
39 -- 45 |
-7.60605 kcal/mol |
0.31609 kcal/mol |
0.514773 kcal/mol |
81 89@LB@ | |@LB@5'-ACU...UCUCU UCAUC...UUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -7.60605 kcal/mol@LB@Unfolding Energy - mRNA 0.31609 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 82 -- 88@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 109 |
0.009396 |
0.2693 |
b1958 |
yedI |
-10.22 |
0.013950 |
83 -- 110 |
33 -- 54 |
DUF808 family inner membrane protein |
|
_____________82_____________________________111\n_____________|______________________________|\n5'-AAA...CAUUC______________AUAUAAUU________UUGUU...CCG-3'\n______________UGCU__GGCGAGAG________GCACUUGA\n______________||||__:||:|||:________||||||:|\n______________ACGA__UCGUUCUU________CGUGAAUU\n3'-UUU...UUUGA____AU________________________UUUUA...CAA-5'\n_____________|______________________________|\n_____________55_____________________________32\n |
104 -- 110 |
33 -- 39 |
-21.3805 kcal/mol |
4.98239 kcal/mol |
6.17798 kcal/mol |
82 111@LB@ | |@LB@5'-AAA...CAUUC AUAUAAUU UUGUU...CCG-3'@LB@ UGCU GGCGAGAG GCACUUGA@LB@ |||| :||:|||: ||||||:|@LB@ ACGA UCGUUCUU CGUGAAUU@LB@3'-UUU...UUUGA AU UUUUA...CAA-5'@LB@ | |@LB@ 55 32@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 4.98239 kcal/mol@LB@Unfolding Energy - sRNA 6.17798 kcal/mol@LB@@LB@Position - mRNA 83 -- 110@LB@Position - sRNA 33 -- 54@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 33 -- 39@LB@ |
