| 69 |
0.00357 |
0.1645 |
b0571 |
cusR |
-5.90 |
0.203942 |
86 -- 99 |
6 -- 21 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________85_______________100\n_____________|________________|\n5'-AGC...UUACU_______C________UUUCC...GGC-3'\n______________CGCCAGG___UCUGAU\n______________|:|||||___||||||\n______________GUGGUCC___AGACUA\n3'-UUU...GCAAU_______UUU______CACAA-5'\n_____________|________________|\n_____________22_______________5\n |
86 -- 92 |
15 -- 21 |
-18.4182 kcal/mol |
4.95815 kcal/mol |
7.56001 kcal/mol |
85 100@LB@ | |@LB@5'-AGC...UUACU C UUUCC...GGC-3'@LB@ CGCCAGG UCUGAU@LB@ |:||||| ||||||@LB@ GUGGUCC AGACUA@LB@3'-UUU...GCAAU UUU CACAA-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -18.4182 kcal/mol@LB@Unfolding Energy - mRNA 4.95815 kcal/mol@LB@Unfolding Energy - sRNA 7.56001 kcal/mol@LB@@LB@Position - mRNA 86 -- 99@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 111 |
0.009564 |
0.2693 |
b2040 |
rfbD |
-5.00 |
0.321114 |
87 -- 99 |
24 -- 42 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________86__________________100\n_____________|___________________|\n5'-GAU...UUUGA___________________AAAAC...CUA-3'\n______________GAGCG______GGAUUCGU\n______________:|||:______::||||||\n______________UUCGU______UUUAAGCA\n3'-UUU...CGUUC_____GAAUUU________AUGUG...CAA-5'\n_____________|___________________|\n_____________43__________________23\n |
93 -- 99 |
24 -- 30 |
-9.51502 kcal/mol |
2.86783 kcal/mol |
1.64896 kcal/mol |
86 100@LB@ | |@LB@5'-GAU...UUUGA AAAAC...CUA-3'@LB@ GAGCG GGAUUCGU@LB@ :|||: ::||||||@LB@ UUCGU UUUAAGCA@LB@3'-UUU...CGUUC GAAUUU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.00 kcal/mol@LB@Hybridization Energy -9.51502 kcal/mol@LB@Unfolding Energy - mRNA 2.86783 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 87 -- 99@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 172 |
0.01959 |
0.3668 |
b0336 |
codB |
-6.02 |
0.190787 |
88 -- 108 |
28 -- 40 |
cytosine transporter |
|
_____________87____________________109\n_____________|_____________________|\n5'-CCA...UUUUU_____CAUUCAUA________AUAUU...UUU-3'\n______________GCACU________UAAAAAAU\n______________|||||________||||||||\n______________CGUGA________AUUUUUUA\n3'-UUU...UUCUU_____________________AGCAA...CAA-5'\n_____________|_____________________|\n_____________41____________________27\n |
102 -- 108 |
28 -- 34 |
-8.50412 kcal/mol |
0.843154 kcal/mol |
1.63611 kcal/mol |
87 109@LB@ | |@LB@5'-CCA...UUUUU CAUUCAUA AUAUU...UUU-3'@LB@ GCACU UAAAAAAU@LB@ ||||| ||||||||@LB@ CGUGA AUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -8.50412 kcal/mol@LB@Unfolding Energy - mRNA 0.843154 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 88 -- 108@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 85 |
0.005692 |
0.2157 |
b4052 |
dnaB |
-8.38 |
0.047402 |
89 -- 103 |
26 -- 40 |
replicative DNA helicase |
|
_____________88______________104\n_____________|_______________|\n5'-UGC...CCACC_______U_______AAUUC...CGG-3'\n______________GUGCUUG_GAAAUUC\n______________|::|||:_:||||||\n______________CGUGAAU_UUUUAAG\n3'-UUU...UUCUU_______U_______CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
97 -- 103 |
26 -- 32 |
-13.045 kcal/mol |
3.01413 kcal/mol |
1.64811 kcal/mol |
88 104@LB@ | |@LB@5'-UGC...CCACC U AAUUC...CGG-3'@LB@ GUGCUUG GAAAUUC@LB@ |::|||: :||||||@LB@ CGUGAAU UUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -13.045 kcal/mol@LB@Unfolding Energy - mRNA 3.01413 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 89 -- 103@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 167 |
0.01879 |
0.3614 |
b4383 |
deoB |
-8.94 |
0.033088 |
90 -- 118 |
37 -- 59 |
phosphopentomutase |
|
_____________89____________________________119\n_____________|_____________________________|\n5'-AGG...CAAUU________CGAUA_____CC__A______ACCAA...AUA-3'\n______________AAACUUGC_____AAGCA__GG_AAGCAC\n______________||||||||_____|||||__:|_||||||\n______________UUUGAACG_____UUCGU__UC_UUCGUG\n3'-UUU...CCUAC________AA___________________AAUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________36\n |
91 -- 97 |
52 -- 58 |
-21.3309 kcal/mol |
6.14475 kcal/mol |
6.24627 kcal/mol |
89 119@LB@ | |@LB@5'-AGG...CAAUU CGAUA CC A ACCAA...AUA-3'@LB@ AAACUUGC AAGCA GG AAGCAC@LB@ |||||||| ||||| :| ||||||@LB@ UUUGAACG UUCGU UC UUCGUG@LB@3'-UUU...CCUAC AA AAUUU...CAA-5'@LB@ | |@LB@ 60 36@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -21.3309 kcal/mol@LB@Unfolding Energy - mRNA 6.14475 kcal/mol@LB@Unfolding Energy - sRNA 6.24627 kcal/mol@LB@@LB@Position - mRNA 90 -- 118@LB@Position - sRNA 37 -- 59@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 48 |
0.002202 |
0.1465 |
b3209 |
elbB |
-11.61 |
0.005163 |
95 -- 137 |
2 -- 41 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________94__________________________________________138\n_____________|___________________________________________|\n5'-GCG...AAGAU___AAA_______U____________G_AUC____AA______GAUGC...GUG-3'\n______________AGC___ACUUAAA_GAUUUGUUACAU_A___AGUU__AUGUGU\n______________|||___|||||||_:|||:||||||:_|___|:|:__||||||\n______________UCG___UGAAUUU_UUAAGCAAUGUG_U___UUAG__UACACA\n3'-UUU...GUUCU_____________U____________G_CCU____AC______A-5'\n_____________|___________________________________________|\n_____________42__________________________________________1\n |
101 -- 107 |
32 -- 38 |
-29.0989 kcal/mol |
8.27062 kcal/mol |
9.22136 kcal/mol |
94 138@LB@ | |@LB@5'-GCG...AAGAU AAA U G AUC AA GAUGC...GUG-3'@LB@ AGC ACUUAAA GAUUUGUUACAU A AGUU AUGUGU@LB@ ||| ||||||| :|||:||||||: | |:|: ||||||@LB@ UCG UGAAUUU UUAAGCAAUGUG U UUAG UACACA@LB@3'-UUU...GUUCU U G CCU AC A-5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -29.0989 kcal/mol@LB@Unfolding Energy - mRNA 8.27062 kcal/mol@LB@Unfolding Energy - sRNA 9.22136 kcal/mol@LB@@LB@Position - mRNA 95 -- 137@LB@Position - sRNA 2 -- 41@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 191 |
0.02253 |
0.38 |
b3186 |
rplU |
-5.10 |
0.305418 |
95 -- 102 |
34 -- 41 |
50S ribosomal subunit protein L21 |
|
_____________94_______103\n_____________|________|\n5'-UUA...ACUGU________UCAAA...UUG-3'\n______________AGCACUUG\n______________|||||||:\n______________UCGUGAAU\n3'-UUU...GUUCU________UUUUU...CAA-5'\n_____________|________|\n_____________42_______33\n |
96 -- 102 |
34 -- 40 |
-9.60207 kcal/mol |
2.88333 kcal/mol |
1.6155 kcal/mol |
94 103@LB@ | |@LB@5'-UUA...ACUGU UCAAA...UUG-3'@LB@ AGCACUUG@LB@ |||||||:@LB@ UCGUGAAU@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 33@LB@@LB@@LB@Energy -5.10 kcal/mol@LB@Hybridization Energy -9.60207 kcal/mol@LB@Unfolding Energy - mRNA 2.88333 kcal/mol@LB@Unfolding Energy - sRNA 1.6155 kcal/mol@LB@@LB@Position - mRNA 95 -- 102@LB@Position - sRNA 34 -- 41@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 31 |
0.0009469 |
0.09599 |
b0166 |
dapD |
-11.60 |
0.005180 |
96 -- 124 |
11 -- 40 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________95_____________________________125\n_____________|______________________________|\n5'-UUG...GGCGU________UAACGA_______G________GCAUC...AGG-3'\n______________GCGCUUAA_______GUUGCA_CAGGAAGU\n______________||:|||||_______|||:||_||||||:|\n______________CGUGAAUU_______CAAUGU_GUCCUUUA\n3'-UUU...UUCUU________UUUUAAG______G________GACUA...CAA-5'\n_____________|______________________________|\n_____________41_____________________________10\n |
97 -- 103 |
33 -- 39 |
-29.7713 kcal/mol |
8.96001 kcal/mol |
9.20882 kcal/mol |
95 125@LB@ | |@LB@5'-UUG...GGCGU UAACGA G GCAUC...AGG-3'@LB@ GCGCUUAA GUUGCA CAGGAAGU@LB@ ||:||||| |||:|| ||||||:|@LB@ CGUGAAUU CAAUGU GUCCUUUA@LB@3'-UUU...UUCUU UUUUAAG G GACUA...CAA-5'@LB@ | |@LB@ 41 10@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -29.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.96001 kcal/mol@LB@Unfolding Energy - sRNA 9.20882 kcal/mol@LB@@LB@Position - mRNA 96 -- 124@LB@Position - sRNA 11 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 46 |
0.002046 |
0.1433 |
b3106 |
yhaK |
-10.10 |
0.015122 |
97 -- 120 |
7 -- 28 |
redox-sensitive bicupin |
|
_____________96_______________________121\n_____________|________________________|\n5'-UCC...GCCAU______CU__U_____________ACAUA...AAU-3'\n______________UUCGUU__CA_UCAGGAAAUUUGA\n______________||||||__||_:||||||||:|||\n______________AAGCAA__GU_GGUCCUUUAGACU\n3'-UUU...UUUUU______U_________________ACACAA-5'\n_____________|________________________|\n_____________29_______________________6\n |
111 -- 117 |
10 -- 16 |
-23.1033 kcal/mol |
4.40095 kcal/mol |
8.59864 kcal/mol |
96 121@LB@ | |@LB@5'-UCC...GCCAU CU U ACAUA...AAU-3'@LB@ UUCGUU CA UCAGGAAAUUUGA@LB@ |||||| || :||||||||:|||@LB@ AAGCAA GU GGUCCUUUAGACU@LB@3'-UUU...UUUUU U ACACAA-5'@LB@ | |@LB@ 29 6@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -23.1033 kcal/mol@LB@Unfolding Energy - mRNA 4.40095 kcal/mol@LB@Unfolding Energy - sRNA 8.59864 kcal/mol@LB@@LB@Position - mRNA 97 -- 120@LB@Position - sRNA 7 -- 28@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 10 -- 16@LB@ |
