| 103 |
0.00845 |
0.2642 |
b0936 |
ssuA |
-4.91 |
0.333979 |
11 -- 31 |
10 -- 40 |
aliphatic sulfonate ABC transporter periplasmic binding protein |
|
_____________10______________________________32\n_____________|_______________________________|\n5'-AGU...UAAGC_______________________________CUGCA...AUC-3'\n______________GCAC_UGAAA________GC_UCAGGAGAUC\n______________||||_|:|||________:|_:|||||:|||\n______________CGUG_AUUUU________UG_GGUCCUUUAG\n3'-UUU...UUCUU____A_____UUAAGCAA__U__________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
25 -- 31 |
10 -- 16 |
-20.0893 kcal/mol |
5.95403 kcal/mol |
9.22048 kcal/mol |
10 32@LB@ | |@LB@5'-AGU...UAAGC CUGCA...AUC-3'@LB@ GCAC UGAAA GC UCAGGAGAUC@LB@ |||| |:||| :| :|||||:|||@LB@ CGUG AUUUU UG GGUCCUUUAG@LB@3'-UUU...UUCUU A UUAAGCAA U ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -4.91 kcal/mol@LB@Hybridization Energy -20.0893 kcal/mol@LB@Unfolding Energy - mRNA 5.95403 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 11 -- 31@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 4 |
1.769e-05 |
0.01424 |
b2105 |
rcnR |
-7.88 |
0.065143 |
12 -- 26 |
36 -- 49 |
transcriptional repressor of rcnA |
|
_____________11______________27\n_____________|_______________|\n5'-UGA...GCACC________U______GGGGA...ACG-3'\n______________AAGUAAGA_GGCGCU\n______________|||:||||_:||:||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
13 -- 19 |
42 -- 48 |
-15.6635 kcal/mol |
1.75127 kcal/mol |
6.03645 kcal/mol |
11 27@LB@ | |@LB@5'-UGA...GCACC U GGGGA...ACG-3'@LB@ AAGUAAGA GGCGCU@LB@ |||:|||| :||:||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -15.6635 kcal/mol@LB@Unfolding Energy - mRNA 1.75127 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 184 |
0.02168 |
0.3768 |
b4380 |
yjjI |
-6.70 |
0.131310 |
12 -- 49 |
9 -- 40 |
DUF3029 family protein putative glycine radical enzyme |
|
_____________11________________________________________50\n_____________|_________________________________________|\n5'-ACA...ACUCC___ACACAC_______A_____AUCACAAUUA_________ACUUA...UGG-3'\n______________GCA_________UUCG_UACAC__________AGGAAAUCU\n______________|||_________||||_|||||__________|||||||||\n______________CGU_________AAGC_AUGUG__________UCCUUUAGA\n3'-UUU...UUCUU___GAAUUUUUU____A_____G__________________CUACACAA-5'\n_____________|_________________________________________|\n_____________41________________________________________8\n |
43 -- 49 |
9 -- 15 |
-18.7623 kcal/mol |
2.84333 kcal/mol |
9.22063 kcal/mol |
11 50@LB@ | |@LB@5'-ACA...ACUCC ACACAC A AUCACAAUUA ACUUA...UGG-3'@LB@ GCA UUCG UACAC AGGAAAUCU@LB@ ||| |||| ||||| |||||||||@LB@ CGU AAGC AUGUG UCCUUUAGA@LB@3'-UUU...UUCUU GAAUUUUUU A G CUACACAA-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -18.7623 kcal/mol@LB@Unfolding Energy - mRNA 2.84333 kcal/mol@LB@Unfolding Energy - sRNA 9.22063 kcal/mol@LB@@LB@Position - mRNA 12 -- 49@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 186 |
0.02184 |
0.3768 |
b1256 |
ompW |
-5.92 |
0.201836 |
13 -- 38 |
30 -- 57 |
outer membrane protein W |
|
_____________12___________________________39\n_____________|____________________________|\n5'-GAC...UUAAU______GU______A_____________UUGAU...CUG-3'\n______________AUUUGC___AGCGA_AA_UAUUUAAAAA\n______________|:||||___|||:|_||_:|:|||||||\n______________UGAACG___UCGUU_UU_GUGAAUUUUU\n3'-UUU...UACUU______AAU_____C__C__________UAAGC...CAA-5'\n_____________|____________________________|\n_____________58___________________________29\n |
32 -- 38 |
30 -- 36 |
-16.1426 kcal/mol |
3.99952 kcal/mol |
6.22352 kcal/mol |
12 39@LB@ | |@LB@5'-GAC...UUAAU GU A UUGAU...CUG-3'@LB@ AUUUGC AGCGA AA UAUUUAAAAA@LB@ |:|||| |||:| || :|:|||||||@LB@ UGAACG UCGUU UU GUGAAUUUUU@LB@3'-UUU...UACUU AAU C C UAAGC...CAA-5'@LB@ | |@LB@ 58 29@LB@@LB@@LB@Energy -5.92 kcal/mol@LB@Hybridization Energy -16.1426 kcal/mol@LB@Unfolding Energy - mRNA 3.99952 kcal/mol@LB@Unfolding Energy - sRNA 6.22352 kcal/mol@LB@@LB@Position - mRNA 13 -- 38@LB@Position - sRNA 30 -- 57@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 55 |
0.002761 |
0.1597 |
b0238 |
gpt |
-5.76 |
0.219641 |
15 -- 42 |
30 -- 59 |
xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase |
|
_____________14_____________________________43\n_____________|______________________________|\n5'-AUG...ACACA____AG____________UAUG________UACCA...UUG-3'\n______________AGAC__GCUU__GCGAGA____UUUGAGAA\n______________|:||__||||__||:|||____:||:|:||\n______________UUUG__CGAA__CGUUCU____GAAUUUUU\n3'-UUU...CCUAC____AA____UU______UCGU________UAAGC...CAA-5'\n_____________|______________________________|\n_____________60_____________________________29\n |
36 -- 42 |
30 -- 36 |
-17.3334 kcal/mol |
5.3037 kcal/mol |
6.27042 kcal/mol |
14 43@LB@ | |@LB@5'-AUG...ACACA AG UAUG UACCA...UUG-3'@LB@ AGAC GCUU GCGAGA UUUGAGAA@LB@ |:|| |||| ||:||| :||:|:||@LB@ UUUG CGAA CGUUCU GAAUUUUU@LB@3'-UUU...CCUAC AA UU UCGU UAAGC...CAA-5'@LB@ | |@LB@ 60 29@LB@@LB@@LB@Energy -5.76 kcal/mol@LB@Hybridization Energy -17.3334 kcal/mol@LB@Unfolding Energy - mRNA 5.3037 kcal/mol@LB@Unfolding Energy - sRNA 6.27042 kcal/mol@LB@@LB@Position - mRNA 15 -- 42@LB@Position - sRNA 30 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 193 |
0.0233 |
0.3864 |
b1563 |
relE |
-9.36 |
0.025073 |
16 -- 27 |
29 -- 40 |
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system |
|
_____________15___________28\n_____________|____________|\n5'-GCG...ACGCC____________AUGGG...UAC-3'\n______________GCGCUUGAAAAA\n______________||:|||:|||||\n______________CGUGAAUUUUUU\n3'-UUU...UUCUU____________AAGCA...CAA-5'\n_____________|____________|\n_____________41___________28\n |
21 -- 27 |
29 -- 35 |
-12.3855 kcal/mol |
1.40487 kcal/mol |
1.62106 kcal/mol |
15 28@LB@ | |@LB@5'-GCG...ACGCC AUGGG...UAC-3'@LB@ GCGCUUGAAAAA@LB@ ||:|||:|||||@LB@ CGUGAAUUUUUU@LB@3'-UUU...UUCUU AAGCA...CAA-5'@LB@ | |@LB@ 41 28@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -12.3855 kcal/mol@LB@Unfolding Energy - mRNA 1.40487 kcal/mol@LB@Unfolding Energy - sRNA 1.62106 kcal/mol@LB@@LB@Position - mRNA 16 -- 27@LB@Position - sRNA 29 -- 40@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 162 |
0.01764 |
0.3508 |
b0654 |
gltJ |
-6.81 |
0.123116 |
18 -- 45 |
15 -- 42 |
glutamate/aspartate ABC transporter permease |
|
_____________17___________________________46\n_____________|____________________________|\n5'-CAA...UGACA_______GAACU____ACAAGA______GGCGG...UCG-3'\n______________AGGCACU_____AAUU______ACCAGG\n______________|:|||||_____||||______||||||\n______________UUCGUGA_____UUAA______UGGUCC\n3'-UUU...CGUUC_______AUUUU____GCAAUG______UUUAG...CAA-5'\n_____________|____________________________|\n_____________43___________________________14\n |
18 -- 24 |
36 -- 42 |
-19.3193 kcal/mol |
3.30421 kcal/mol |
9.20431 kcal/mol |
17 46@LB@ | |@LB@5'-CAA...UGACA GAACU ACAAGA GGCGG...UCG-3'@LB@ AGGCACU AAUU ACCAGG@LB@ |:||||| |||| ||||||@LB@ UUCGUGA UUAA UGGUCC@LB@3'-UUU...CGUUC AUUUU GCAAUG UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -19.3193 kcal/mol@LB@Unfolding Energy - mRNA 3.30421 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 18 -- 45@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 51 |
0.002326 |
0.1469 |
b2780 |
pyrG |
-6.37 |
0.158020 |
19 -- 28 |
33 -- 42 |
CTP synthetase |
|
_____________18_________29\n_____________|__________|\n5'-UGU...AUGAC__________UUUGC...GCC-3'\n______________AAGCGCUUGA\n______________||||:|||:|\n______________UUCGUGAAUU\n3'-UUU...CGUUC__________UUUUA...CAA-5'\n_____________|__________|\n_____________43_________32\n |
22 -- 28 |
33 -- 39 |
-10.9983 kcal/mol |
3.00927 kcal/mol |
1.61944 kcal/mol |
18 29@LB@ | |@LB@5'-UGU...AUGAC UUUGC...GCC-3'@LB@ AAGCGCUUGA@LB@ ||||:|||:|@LB@ UUCGUGAAUU@LB@3'-UUU...CGUUC UUUUA...CAA-5'@LB@ | |@LB@ 43 32@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -10.9983 kcal/mol@LB@Unfolding Energy - mRNA 3.00927 kcal/mol@LB@Unfolding Energy - sRNA 1.61944 kcal/mol@LB@@LB@Position - mRNA 19 -- 28@LB@Position - sRNA 33 -- 42@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 83 |
0.005546 |
0.2146 |
b0221 |
fadE |
-11.24 |
0.006780 |
20 -- 32 |
37 -- 49 |
acyl coenzyme A dehydrogenase |
|
_____________19____________33\n_____________|_____________|\n5'-GUG...GCCAA_____________GGGCA...GGA-3'\n______________AAGCGAGAAGUAC\n______________||||:|||||:||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
26 -- 32 |
37 -- 43 |
-19.9972 kcal/mol |
2.7283 kcal/mol |
6.03369 kcal/mol |
19 33@LB@ | |@LB@5'-GUG...GCCAA GGGCA...GGA-3'@LB@ AAGCGAGAAGUAC@LB@ ||||:|||||:||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.9972 kcal/mol@LB@Unfolding Energy - mRNA 2.7283 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 195 |
0.02349 |
0.3864 |
b3982 |
nusG |
-7.66 |
0.074558 |
21 -- 55 |
24 -- 55 |
transcription termination factor |
|
_____________20__________________________________56\n_____________|___________________________________|\n5'-GAC...UACCG______UU__CCGU_______GUACC_____C___AAGGU...ACA-3'\n______________UUGCUU__GC____GAAGCGC_____GAAGU_CGU\n______________||||||__||____|||||:|_____:||:|_|||\n______________AACGAA__CG____CUUCGUG_____UUUUA_GCA\n3'-UUU...CUUUG______UU__UU_________AAUU______A___AUGUG...CAA-5'\n_____________|___________________________________|\n_____________56__________________________________23\n |
35 -- 41 |
37 -- 43 |
-23.8738 kcal/mol |
9.94572 kcal/mol |
6.27216 kcal/mol |
20 56@LB@ | |@LB@5'-GAC...UACCG UU CCGU GUACC C AAGGU...ACA-3'@LB@ UUGCUU GC GAAGCGC GAAGU CGU@LB@ |||||| || |||||:| :||:| |||@LB@ AACGAA CG CUUCGUG UUUUA GCA@LB@3'-UUU...CUUUG UU UU AAUU A AUGUG...CAA-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -23.8738 kcal/mol@LB@Unfolding Energy - mRNA 9.94572 kcal/mol@LB@Unfolding Energy - sRNA 6.27216 kcal/mol@LB@@LB@Position - mRNA 21 -- 55@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 37 -- 43@LB@ |
