22 |
0.0001652 |
0.02641 |
b3566 |
xylF |
-9.94 |
0.047349 |
202 -- 240 |
1 -- 33 |
D-xylose transporter subunit |
|
_____________201_____________________________________241\n_____________|_______________________________________|\n5'-CGA...CACCA_____AUAA________C__CUCAC______C____C__UCCUG...AUG-3'\n______________UGAAA____AGAACAUU_UA_____CCUUUG_ACCU_AC\n______________|||||____|||||||:_||_____|||:||_|||:_||\n______________ACUUU____UCUUGUAG_AU_____GGAGAC_UGGG_UG\n3'-AUU...UCCAG_____CUA_________A_____________A____A__-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
212 -- 218 |
18 -- 24 |
-22.447 kcal/mol |
3.48977 kcal/mol |
9.04529 kcal/mol |
201 241@LB@ | |@LB@5'-CGA...CACCA AUAA C CUCAC C C UCCUG...AUG-3'@LB@ UGAAA AGAACAUU UA CCUUUG ACCU AC@LB@ ||||| |||||||: || |||:|| |||: ||@LB@ ACUUU UCUUGUAG AU GGAGAC UGGG UG@LB@3'-AUU...UCCAG CUA A A A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -22.447 kcal/mol@LB@Unfolding Energy - mRNA 3.48977 kcal/mol@LB@Unfolding Energy - sRNA 9.04529 kcal/mol@LB@@LB@Position - mRNA 202 -- 240@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 18 -- 24@LB@ |
12 |
3.867e-05 |
0.01134 |
b0728 |
sucC |
-9.87 |
0.049323 |
145 -- 186 |
43 -- 73 |
succinyl-CoA synthetase beta subunit |
|
_____________144_________________________________________187\n_____________|___________________________________________|\n5'-CGC...GAUAC_____________UACGGUUUAAA____AA_____________GAUGG...AAG-3'\n______________GAAAUAUUCGGUC___________AGAU__CGAUUAC_UGAAG\n______________:||||||||:|:|___________|:||__|||||||_|||||\n______________UUUUAUAAGUCGG___________UUUA__GCUAAUG_ACUUC\n3'-AUU...GCCGA____________________________G________C_____AUUUU...AUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________42\n |
175 -- 181 |
49 -- 55 |
-26.5157 kcal/mol |
7.48621 kcal/mol |
9.17828 kcal/mol |
144 187@LB@ | |@LB@5'-CGC...GAUAC UACGGUUUAAA AA GAUGG...AAG-3'@LB@ GAAAUAUUCGGUC AGAU CGAUUAC UGAAG@LB@ :||||||||:|:| |:|| ||||||| |||||@LB@ UUUUAUAAGUCGG UUUA GCUAAUG ACUUC@LB@3'-AUU...GCCGA G C AUUUU...AUG-5'@LB@ | |@LB@ 74 42@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -26.5157 kcal/mol@LB@Unfolding Energy - mRNA 7.48621 kcal/mol@LB@Unfolding Energy - sRNA 9.17828 kcal/mol@LB@@LB@Position - mRNA 145 -- 186@LB@Position - sRNA 43 -- 73@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
127 |
0.004255 |
0.1179 |
b2838 |
lysA |
-9.87 |
0.049362 |
214 -- 233 |
52 -- 69 |
diaminopimelate decarboxylase PLP-binding |
|
_____________213__________________234\n_____________|____________________|\n5'-GGU...UUCAC________A_C___A_____CUCAC...CGC-3'\n______________UGUUCAGC_C_GAU_CCGAU\n______________|:||||||_|_:||_|||||\n______________AUAAGUCG_G_UUA_GGCUA\n3'-AUU...AUUUU__________U_________AUGCA...AUG-5'\n_____________|____________________|\n_____________70___________________51\n |
215 -- 221 |
62 -- 68 |
-18.1264 kcal/mol |
2.0842 kcal/mol |
6.19243 kcal/mol |
213 234@LB@ | |@LB@5'-GGU...UUCAC A C A CUCAC...CGC-3'@LB@ UGUUCAGC C GAU CCGAU@LB@ |:|||||| | :|| |||||@LB@ AUAAGUCG G UUA GGCUA@LB@3'-AUU...AUUUU U AUGCA...AUG-5'@LB@ | |@LB@ 70 51@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -18.1264 kcal/mol@LB@Unfolding Energy - mRNA 2.0842 kcal/mol@LB@Unfolding Energy - sRNA 6.19243 kcal/mol@LB@@LB@Position - mRNA 214 -- 233@LB@Position - sRNA 52 -- 69@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 62 -- 68@LB@ |
102 |
0.003218 |
0.1101 |
b3816 |
corA |
-9.85 |
0.049984 |
130 -- 160 |
4 -- 37 |
magnesium/nickel/cobalt transporter |
|
_____________129_________________________________161\n_____________|___________________________________|\n5'-ACC...UUAAU_________CCCA________GUU___G_______ACCGA...AAC-3'\n______________GGUCUGAAA________AUUU___UCU_UGUGCCC\n______________|||||||||________||:|___:||_|||:|||\n______________CCAGACUUU________UAGA___GGA_ACAUGGG\n3'-AUU...AUUUU_________CUAUCUUG____AU____G_______AUG-5'\n_____________|___________________________________|\n_____________38__________________________________3\n |
154 -- 160 |
4 -- 10 |
-28.4013 kcal/mol |
7.22925 kcal/mol |
11.3428 kcal/mol |
129 161@LB@ | |@LB@5'-ACC...UUAAU CCCA GUU G ACCGA...AAC-3'@LB@ GGUCUGAAA AUUU UCU UGUGCCC@LB@ ||||||||| ||:| :|| |||:|||@LB@ CCAGACUUU UAGA GGA ACAUGGG@LB@3'-AUU...AUUUU CUAUCUUG AU G AUG-5'@LB@ | |@LB@ 38 3@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -28.4013 kcal/mol@LB@Unfolding Energy - mRNA 7.22925 kcal/mol@LB@Unfolding Energy - sRNA 11.3428 kcal/mol@LB@@LB@Position - mRNA 130 -- 160@LB@Position - sRNA 4 -- 37@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 4 -- 10@LB@ |
107 |
0.003396 |
0.1101 |
b3871 |
typA |
-9.79 |
0.052081 |
283 -- 294 |
47 -- 59 |
GTP-binding protein |
|
_____________282___________295\n_____________|_____________|\n5'-UGC...CCAAC_____________UCGACU-3'\n______________AAUCCGGU_ACGU\n______________||||||:|_||||\n______________UUAGGCUA_UGCA\n3'-AUU...UCGGU________A____CUUCA...AUG-5'\n_____________|_____________|\n_____________60____________46\n |
284 -- 290 |
52 -- 58 |
-13.0383 kcal/mol |
1.68034 kcal/mol |
1.56852 kcal/mol |
282 295@LB@ | |@LB@5'-UGC...CCAAC UCGACU-3'@LB@ AAUCCGGU ACGU@LB@ ||||||:| ||||@LB@ UUAGGCUA UGCA@LB@3'-AUU...UCGGU A CUUCA...AUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -13.0383 kcal/mol@LB@Unfolding Energy - mRNA 1.68034 kcal/mol@LB@Unfolding Energy - sRNA 1.56852 kcal/mol@LB@@LB@Position - mRNA 283 -- 294@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 52 -- 58@LB@ |
14 |
5.486e-05 |
0.01183 |
b0420 |
dxs |
-9.76 |
0.053178 |
24 -- 31 |
1 -- 8 |
1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring |
|
_____________23_______32\n_____________|________|\n5'-ACC...GUACC________ACUUC...ACG-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
25 -- 31 |
1 -- 7 |
-13.3609 kcal/mol |
1.5078 kcal/mol |
2.11603 kcal/mol |
23 32@LB@ | |@LB@5'-ACC...GUACC ACUUC...ACG-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -13.3609 kcal/mol@LB@Unfolding Energy - mRNA 1.5078 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 24 -- 31@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 1 -- 7@LB@ |
152 |
0.006159 |
0.1406 |
b2467 |
nudK |
-9.74 |
0.053801 |
255 -- 261 |
1 -- 7 |
GDP-mannose pyrophosphatase |
|
_____________254_____262\n_____________|_______|\n5'-CAA...AUUUC_______ACAAC...AAG-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
255 -- 261 |
1 -- 7 |
-11.9691 kcal/mol |
0.21022 kcal/mol |
2.03949 kcal/mol |
254 262@LB@ | |@LB@5'-CAA...AUUUC ACAAC...AAG-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -11.9691 kcal/mol@LB@Unfolding Energy - mRNA 0.21022 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
134 |
0.004727 |
0.1241 |
b1655 |
mepH |
-9.70 |
0.055155 |
231 -- 243 |
1 -- 13 |
murein DD-endopeptidase space-maker hydrolase |
|
_____________230___________244\n_____________|_____________|\n5'-CGU...UCACG_____________UUUUU...AGA-3'\n______________CUCUGUGCUUUAC\n______________||||||:|::|||\n______________GAGACAUGGGAUG\n3'-AUU...GAAUG_____________-5'\n_____________|____________|\n_____________14___________1\n |
237 -- 243 |
1 -- 7 |
-18.9465 kcal/mol |
4.13106 kcal/mol |
5.13393 kcal/mol |
230 244@LB@ | |@LB@5'-CGU...UCACG UUUUU...AGA-3'@LB@ CUCUGUGCUUUAC@LB@ ||||||:|::|||@LB@ GAGACAUGGGAUG@LB@3'-AUU...GAAUG -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -18.9465 kcal/mol@LB@Unfolding Energy - mRNA 4.13106 kcal/mol@LB@Unfolding Energy - sRNA 5.13393 kcal/mol@LB@@LB@Position - mRNA 231 -- 243@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 1 -- 7@LB@ |
81 |
0.001761 |
0.07647 |
b3311 |
rpsQ |
-9.62 |
0.058411 |
217 -- 225 |
1 -- 9 |
30S ribosomal subunit protein S17 |
|
_____________216_______226\n_____________|_________|\n5'-GGU...AAUCC_________AAGGU...UCU-3'\n______________GUACUCUGC\n______________||||:||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
219 -- 225 |
1 -- 7 |
-13.7932 kcal/mol |
2.07071 kcal/mol |
2.12872 kcal/mol |
216 226@LB@ | |@LB@5'-GGU...AAUCC AAGGU...UCU-3'@LB@ GUACUCUGC@LB@ ||||:||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -13.7932 kcal/mol@LB@Unfolding Energy - mRNA 2.07071 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 217 -- 225@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 1 -- 7@LB@ |
49 |
0.0005477 |
0.03933 |
b2715 |
ascF |
-9.59 |
0.059292 |
173 -- 180 |
1 -- 8 |
cellobiose/arbutin/salicin-specific PTS enzymes IIB and IC components |
|
_____________172______181\n_____________|________|\n5'-UGC...ACAUC________UGAUA...GCU-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
174 -- 180 |
1 -- 7 |
-12.1729 kcal/mol |
0.486168 kcal/mol |
2.11603 kcal/mol |
172 181@LB@ | |@LB@5'-UGC...ACAUC UGAUA...GCU-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -12.1729 kcal/mol@LB@Unfolding Energy - mRNA 0.486168 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 173 -- 180@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |