| 61 |
0.0009386 |
0.05413 |
b0574 |
cusB |
-12.39 |
0.007718 |
27 -- 84 |
1 -- 59 |
copper/silver efflux system membrane fusion protein |
|
_____________26_____________________________________________________________85\n_____________|______________________________________________________________|\n5'-AAA...AUCAC______________CC_____CU__C_G____U__CCAU___C______A_________C__AGACG...AAA-3'\n______________GAUCCGAUUGC_UG__GUGAA__GG_C_GAGA_GA____GCG_UUUACC_UC___ACCC_GC\n______________:||||||||:|_||__||:||__||_|_||:|_||____:|:_:|||||_||___||||_:|\n______________UUAGGCUAAUG_AC__CAUUU__CC_G_CUUU_CU____UGU_GAAUGG_AG___UGGG_UG\n3'-AUU...UCGGU___________C__UU_____U___A_A_______AUCU___A_________ACA____A__-5'\n_____________|_____________________________________________________________|\n_____________60____________________________________________________________1\n |
31 -- 37 |
49 -- 55 |
-39.7476 kcal/mol |
14.6812 kcal/mol |
12.7027 kcal/mol |
26 85@LB@ | |@LB@5'-AAA...AUCAC CC CU C G U CCAU C A C AGACG...AAA-3'@LB@ GAUCCGAUUGC UG GUGAA GG C GAGA GA GCG UUUACC UC ACCC GC@LB@ :||||||||:| || ||:|| || | ||:| || :|: :||||| || |||| :|@LB@ UUAGGCUAAUG AC CAUUU CC G CUUU CU UGU GAAUGG AG UGGG UG@LB@3'-AUU...UCGGU C UU U A A AUCU A ACA A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -39.7476 kcal/mol@LB@Unfolding Energy - mRNA 14.6812 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 27 -- 84@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 15 |
5.569e-05 |
0.01183 |
b1761 |
gdhA |
-12.26 |
0.008568 |
280 -- 294 |
40 -- 56 |
glutamate dehydrogenase NADP-specific |
|
_____________279_______________295\n_____________|_________________|\n5'-UAA...GCAAG___UU____________UGACCA-3'\n______________CCG____CGUGAAGUAA\n______________|||____||||||||||\n______________GGC____GCACUUCAUU\n3'-AUU...GUUUA___UAAU__________UUCCA...AUG-5'\n_____________|_________________|\n_____________57________________39\n |
288 -- 294 |
40 -- 46 |
-17.1153 kcal/mol |
1.5283 kcal/mol |
3.34823 kcal/mol |
279 295@LB@ | |@LB@5'-UAA...GCAAG UU UGACCA-3'@LB@ CCG CGUGAAGUAA@LB@ ||| ||||||||||@LB@ GGC GCACUUCAUU@LB@3'-AUU...GUUUA UAAU UUCCA...AUG-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -17.1153 kcal/mol@LB@Unfolding Energy - mRNA 1.5283 kcal/mol@LB@Unfolding Energy - sRNA 3.34823 kcal/mol@LB@@LB@Position - mRNA 280 -- 294@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 17 |
5.719e-05 |
0.01183 |
b3675 |
yidG |
-12.05 |
0.010096 |
82 -- 130 |
1 -- 56 |
inner membrane protein |
|
_____________81_____________________________________________________________131\n_____________|______________________________________________________________|\n5'-CGC...UUGCG_________CAAU_A_____CGAUGC__________GG________________________ACCAA...CGU-3'\n______________CUGGUUACG____G_AAAAG______GUCUGAAAGA___________ACCU____GCCCUAC\n______________|:|:|||||____|_|||||______||||||||||___________||||____:||||||\n______________GGCUAAUGC____C_UUUUC______CAGACUUUCU___________UGGA____UGGGAUG\n3'-AUU...GUUUA_________ACUU_A_____________________AUCUUGUAGAA____GACA_______-5'\n_____________|_____________________________________________________________|\n_____________57____________________________________________________________1\n |
124 -- 130 |
1 -- 7 |
-38.348 kcal/mol |
13.6157 kcal/mol |
12.7022 kcal/mol |
81 131@LB@ | |@LB@5'-CGC...UUGCG CAAU A CGAUGC GG ACCAA...CGU-3'@LB@ CUGGUUACG G AAAAG GUCUGAAAGA ACCU GCCCUAC@LB@ |:|:||||| | ||||| |||||||||| |||| :||||||@LB@ GGCUAAUGC C UUUUC CAGACUUUCU UGGA UGGGAUG@LB@3'-AUU...GUUUA ACUU A AUCUUGUAGAA GACA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -38.348 kcal/mol@LB@Unfolding Energy - mRNA 13.6157 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 82 -- 130@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 33 |
0.0003369 |
0.03519 |
b0523 |
purE |
-12.01 |
0.010423 |
150 -- 160 |
3 -- 13 |
N5-carboxyaminoimidazole ribonucleotide mutase |
|
_____________149__________161\n_____________|____________|\n5'-UGG...GCUAU____________CUAAA...UGA-3'\n______________UCUCUGUGCCCU\n______________:||||||:||||\n______________GGAGACAUGGGA\n3'-AUU...AGAAU____________UG-5'\n_____________|____________|\n_____________14___________2\n |
154 -- 160 |
3 -- 9 |
-20.2448 kcal/mol |
2.89849 kcal/mol |
5.35591 kcal/mol |
149 161@LB@ | |@LB@5'-UGG...GCUAU CUAAA...UGA-3'@LB@ UCUCUGUGCCCU@LB@ :||||||:||||@LB@ GGAGACAUGGGA@LB@3'-AUU...AGAAU UG-5'@LB@ | |@LB@ 14 2@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -20.2448 kcal/mol@LB@Unfolding Energy - mRNA 2.89849 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 150 -- 160@LB@Position - sRNA 3 -- 13@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 160 |
0.006479 |
0.1413 |
b0391 |
yaiE |
-12.00 |
0.010520 |
148 -- 162 |
1 -- 15 |
UPF0345 family protein |
|
_____________147_____________163\n_____________|_______________|\n5'-GAU...CCAGC_______GC______AGUGA...GCG-3'\n______________GCCUCUG__CCCUAU\n______________:||||||__|||||:\n______________UGGAGAC__GGGAUG\n3'-AUU...UAGAA_______AU______-5'\n_____________|______________|\n_____________16_____________1\n |
148 -- 154 |
9 -- 15 |
-21.6181 kcal/mol |
3.81195 kcal/mol |
5.82808 kcal/mol |
147 163@LB@ | |@LB@5'-GAU...CCAGC GC AGUGA...GCG-3'@LB@ GCCUCUG CCCUAU@LB@ :|||||| |||||:@LB@ UGGAGAC GGGAUG@LB@3'-AUU...UAGAA AU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.6181 kcal/mol@LB@Unfolding Energy - mRNA 3.81195 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 31 |
0.0003178 |
0.03519 |
b3588 |
aldB |
-11.98 |
0.010708 |
83 -- 100 |
1 -- 16 |
aldehyde dehydrogenase B |
|
_____________82_________________101\n_____________|__________________|\n5'-GAA...UCAAC__________A___U___CCGUA...GGG-3'\n______________UAUCUCUGUA_CCC_UGC\n______________||:|||||||_|||_|:|\n______________AUGGAGACAU_GGG_AUG\n3'-AUU...GUAGA__________________-5'\n_____________|_________________|\n_____________17________________1\n |
86 -- 92 |
7 -- 13 |
-19.6311 kcal/mol |
1.07825 kcal/mol |
6.59719 kcal/mol |
82 101@LB@ | |@LB@5'-GAA...UCAAC A U CCGUA...GGG-3'@LB@ UAUCUCUGUA CCC UGC@LB@ ||:||||||| ||| |:|@LB@ AUGGAGACAU GGG AUG@LB@3'-AUU...GUAGA -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.6311 kcal/mol@LB@Unfolding Energy - mRNA 1.07825 kcal/mol@LB@Unfolding Energy - sRNA 6.59719 kcal/mol@LB@@LB@Position - mRNA 83 -- 100@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 139 |
0.005017 |
0.127 |
b2603 |
yfiR |
-11.92 |
0.011246 |
223 -- 243 |
1 -- 19 |
putative periplasmic inhibitor of YfiN activity |
|
_____________222___________________244\n_____________|_____________________|\n5'-GUA...ACUGU___________AUUC______UGACG...GUA-3'\n______________UCUUACUUCUG____UCCUGC\n______________||||||:||||____:|||:|\n______________AGAAUGGAGAC____GGGAUG\n3'-AUU...CUUGU___________AU________-5'\n_____________|____________________|\n_____________20___________________1\n |
227 -- 233 |
9 -- 15 |
-21.8705 kcal/mol |
2.00959 kcal/mol |
7.96751 kcal/mol |
222 244@LB@ | |@LB@5'-GUA...ACUGU AUUC UGACG...GUA-3'@LB@ UCUUACUUCUG UCCUGC@LB@ ||||||:|||| :|||:|@LB@ AGAAUGGAGAC GGGAUG@LB@3'-AUU...CUUGU AU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -21.8705 kcal/mol@LB@Unfolding Energy - mRNA 2.00959 kcal/mol@LB@Unfolding Energy - sRNA 7.96751 kcal/mol@LB@@LB@Position - mRNA 223 -- 243@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 189 |
0.008373 |
0.1558 |
b1559 |
quuQ |
-11.90 |
0.011421 |
197 -- 219 |
1 -- 24 |
Qin prophage; putative antitermination protein Q |
|
_____________196______________________220\n_____________|________________________|\n5'-UCU...AGAAC______GA______GAA_______CAAAA...AUG-3'\n______________GAGCAU___ACCUU___GCCUUAC\n______________||:|||___||||:___:||:|||\n______________CUUGUA___UGGAG___UGGGAUG\n3'-AUU...UCUAU______GAA_____ACA_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
213 -- 219 |
1 -- 7 |
-21.9861 kcal/mol |
2.0909 kcal/mol |
8.02158 kcal/mol |
196 220@LB@ | |@LB@5'-UCU...AGAAC GA GAA CAAAA...AUG-3'@LB@ GAGCAU ACCUU GCCUUAC@LB@ ||:||| ||||: :||:|||@LB@ CUUGUA UGGAG UGGGAUG@LB@3'-AUU...UCUAU GAA ACA -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -21.9861 kcal/mol@LB@Unfolding Energy - mRNA 2.0909 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 197 -- 219@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 63 |
0.001074 |
0.05856 |
b0448 |
mdlA |
-11.87 |
0.011698 |
129 -- 162 |
4 -- 28 |
putative multidrug ABC transporter ATPase |
|
_____________128________________________________163\n_____________|__________________________________|\n5'-UGG...UUCGC_________GA__AAAUACACC______U_____AUCGA...UGG-3'\n______________GAUGGAACA__UU_________ACUUCU_UACCC\n______________|||:|||||__||_________||:|||_|||||\n______________CUAUCUUGU__AA_________UGGAGA_AUGGG\n3'-AUU...ACUUU_________AG_________________C_____AUG-5'\n_____________|__________________________________|\n_____________29_________________________________3\n |
131 -- 137 |
20 -- 26 |
-24.4185 kcal/mol |
4.52675 kcal/mol |
8.04825 kcal/mol |
128 163@LB@ | |@LB@5'-UGG...UUCGC GA AAAUACACC U AUCGA...UGG-3'@LB@ GAUGGAACA UU ACUUCU UACCC@LB@ |||:||||| || ||:||| |||||@LB@ CUAUCUUGU AA UGGAGA AUGGG@LB@3'-AUU...ACUUU AG C AUG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -24.4185 kcal/mol@LB@Unfolding Energy - mRNA 4.52675 kcal/mol@LB@Unfolding Energy - sRNA 8.04825 kcal/mol@LB@@LB@Position - mRNA 129 -- 162@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 65 |
0.001093 |
0.05856 |
b1519 |
tam |
-11.83 |
0.011992 |
187 -- 231 |
1 -- 50 |
trans-aconitate methyltransferase |
|
_____________186____________________________________________________232\n_____________|______________________________________________________|\n5'-UUU...CGCUG_____________AAAU______C_________C__________U___A_____ACUUU...AAU-3'\n______________ACG_GGAGUAAAA____GUCUGA____UGGAAC______CCUCU_UAU_UCUAC\n______________|||_|:|||||||____||||||____|:||||______|||||_||:_:||||\n______________UGC_CUUCAUUUU____CAGACU____AUCUUG______GGAGA_AUG_GGAUG\n3'-AUU...GCUAA___A_________C_________UUCU______UAGAAU_____C_________-5'\n_____________|_____________________________________________________|\n_____________51____________________________________________________1\n |
191 -- 197 |
39 -- 45 |
-32.7669 kcal/mol |
8.27841 kcal/mol |
12.6772 kcal/mol |
186 232@LB@ | |@LB@5'-UUU...CGCUG AAAU C C U A ACUUU...AAU-3'@LB@ ACG GGAGUAAAA GUCUGA UGGAAC CCUCU UAU UCUAC@LB@ ||| |:||||||| |||||| |:|||| ||||| ||: :||||@LB@ UGC CUUCAUUUU CAGACU AUCUUG GGAGA AUG GGAUG@LB@3'-AUU...GCUAA A C UUCU UAGAAU C -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -32.7669 kcal/mol@LB@Unfolding Energy - mRNA 8.27841 kcal/mol@LB@Unfolding Energy - sRNA 12.6772 kcal/mol@LB@@LB@Position - mRNA 187 -- 231@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
