173 |
0.007216 |
0.1466 |
b3650 |
spoT |
-5.39 |
0.520602 |
11 -- 17 |
54 -- 60 |
bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|
_____________10______18\n_____________|_______|\n5'-UAG...GGAAA_______CUGGU...CUC-3'\n______________GGAUCCG\n______________::|||||\n______________UUUAGGC\n3'-AUU...GUCGG_______UAAUG...AUG-5'\n_____________|_______|\n_____________61______53\n |
11 -- 17 |
54 -- 60 |
-6.87427 kcal/mol |
1.21245 kcal/mol |
0.286889 kcal/mol |
10 18@LB@ | |@LB@5'-UAG...GGAAA CUGGU...CUC-3'@LB@ GGAUCCG@LB@ ::|||||@LB@ UUUAGGC@LB@3'-AUU...GUCGG UAAUG...AUG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -6.87427 kcal/mol@LB@Unfolding Energy - mRNA 1.21245 kcal/mol@LB@Unfolding Energy - sRNA 0.286889 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 54 -- 60@LB@ |
194 |
0.008663 |
0.1558 |
b0213 |
yafS |
-5.39 |
0.521143 |
17 -- 34 |
51 -- 73 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________16______________________35\n_____________|_______________________|\n5'-UGG...GGUGA_______________________GCCAG...UCA-3'\n______________GAAAUAU__GGCC___UCCGGUU\n______________:||||||__:|||___||||:||\n______________UUUUAUA__UCGG___AGGCUAA\n3'-AUU...GCCGA_______AG____UUU_______UGCAC...AUG-5'\n_____________|_______________________|\n_____________74______________________50\n |
28 -- 34 |
51 -- 57 |
-15.2768 kcal/mol |
3.69768 kcal/mol |
6.213 kcal/mol |
16 35@LB@ | |@LB@5'-UGG...GGUGA GCCAG...UCA-3'@LB@ GAAAUAU GGCC UCCGGUU@LB@ :|||||| :||| ||||:||@LB@ UUUUAUA UCGG AGGCUAA@LB@3'-AUU...GCCGA AG UUU UGCAC...AUG-5'@LB@ | |@LB@ 74 50@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.2768 kcal/mol@LB@Unfolding Energy - mRNA 3.69768 kcal/mol@LB@Unfolding Energy - sRNA 6.213 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 51 -- 73@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 51 -- 57@LB@ |
115 |
0.00375 |
0.1147 |
b1057 |
yceJ |
-5.38 |
0.522888 |
37 -- 59 |
1 -- 23 |
putative cytochrome b561 |
|
_____________36_______________________60\n_____________|________________________|\n5'-UGA...CACCA_______C__AUG___A_______UAAAC...UGU-3'\n______________GACAUCU_UG___CUG_ACCC_AC\n______________:||||||_|:___|||_||||_||\n______________UUGUAGA_AU___GAC_UGGG_UG\n3'-AUU...CUAUC__________GGA___A____A__-5'\n_____________|_______________________|\n_____________24______________________1\n |
37 -- 43 |
17 -- 23 |
-17.2281 kcal/mol |
3.85652 kcal/mol |
8.01506 kcal/mol |
36 60@LB@ | |@LB@5'-UGA...CACCA C AUG A UAAAC...UGU-3'@LB@ GACAUCU UG CUG ACCC AC@LB@ :|||||| |: ||| |||| ||@LB@ UUGUAGA AU GAC UGGG UG@LB@3'-AUU...CUAUC GGA A A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -17.2281 kcal/mol@LB@Unfolding Energy - mRNA 3.85652 kcal/mol@LB@Unfolding Energy - sRNA 8.01506 kcal/mol@LB@@LB@Position - mRNA 37 -- 59@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 17 -- 23@LB@ |
169 |
0.006985 |
0.1454 |
b0384 |
psiF |
-5.27 |
0.543574 |
221 -- 228 |
1 -- 8 |
PsiF family protein |
|
_____________220______229\n_____________|________|\n5'-CCC...CUGGU________UUUUC...UGA-3'\n______________UACCUUGC\n______________||||:|:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
222 -- 228 |
1 -- 7 |
-9.62499 kcal/mol |
2.26355 kcal/mol |
2.11603 kcal/mol |
220 229@LB@ | |@LB@5'-CCC...CUGGU UUUUC...UGA-3'@LB@ UACCUUGC@LB@ ||||:|:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -5.27 kcal/mol@LB@Hybridization Energy -9.62499 kcal/mol@LB@Unfolding Energy - mRNA 2.26355 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 221 -- 228@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
50 |
0.0006038 |
0.04249 |
b3755 |
yieP |
-5.20 |
0.556147 |
189 -- 196 |
25 -- 32 |
putative transcriptional regulator |
|
_____________188______197\n_____________|________|\n5'-UUC...AAAAA________AGUAA...CCG-3'\n______________GGAAGAUA\n______________|:||||||\n______________CUUUCUAU\n3'-AUU...CCAGA________CUUGU...AUG-5'\n_____________|________|\n_____________33_______24\n |
190 -- 196 |
25 -- 31 |
-8.32385 kcal/mol |
1.19727 kcal/mol |
1.85262 kcal/mol |
188 197@LB@ | |@LB@5'-UUC...AAAAA AGUAA...CCG-3'@LB@ GGAAGAUA@LB@ |:||||||@LB@ CUUUCUAU@LB@3'-AUU...CCAGA CUUGU...AUG-5'@LB@ | |@LB@ 33 24@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -8.32385 kcal/mol@LB@Unfolding Energy - mRNA 1.19727 kcal/mol@LB@Unfolding Energy - sRNA 1.85262 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 25 -- 32@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
3 |
0 |
0 |
b2564 |
pdxJ |
-5.03 |
0.588876 |
273 -- 283 |
52 -- 62 |
pyridoxine 5'-phosphate synthase |
|
_____________272_________284\n_____________|___________|\n5'-AAA...CUUAC___________GCAGG...UUG-3'\n______________CCGGAUCCGGU\n______________||::|||||:|\n______________GGUUUAGGCUA\n3'-AUU...AAGUC___________AUGCA...AUG-5'\n_____________|___________|\n_____________63__________51\n |
277 -- 283 |
52 -- 58 |
-14.6263 kcal/mol |
4.30712 kcal/mol |
5.31395 kcal/mol |
272 284@LB@ | |@LB@5'-AAA...CUUAC GCAGG...UUG-3'@LB@ CCGGAUCCGGU@LB@ ||::|||||:|@LB@ GGUUUAGGCUA@LB@3'-AUU...AAGUC AUGCA...AUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -14.6263 kcal/mol@LB@Unfolding Energy - mRNA 4.30712 kcal/mol@LB@Unfolding Energy - sRNA 5.31395 kcal/mol@LB@@LB@Position - mRNA 273 -- 283@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 52 -- 58@LB@ |
66 |
0.001146 |
0.05856 |
b1657 |
ydhP |
-3.95 |
0.782289 |
131 -- 139 |
49 -- 57 |
putative MFS transporter inner membrane protein |
|
_____________130_______140\n_____________|_________|\n5'-UCG...UUUUU_G_______UGUCA...GCG-3'\n______________U_UGAUUGC\n______________|_:||||:|\n______________A_GCUAAUG\n3'-AUU...GGUUU_G_______CACUU...AUG-5'\n_____________|_________|\n_____________58________48\n |
133 -- 139 |
49 -- 55 |
-6.30818 kcal/mol |
2.04371 kcal/mol |
0.318327 kcal/mol |
130 140@LB@ | |@LB@5'-UCG...UUUUU G UGUCA...GCG-3'@LB@ U UGAUUGC@LB@ | :||||:|@LB@ A GCUAAUG@LB@3'-AUU...GGUUU G CACUU...AUG-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -3.95 kcal/mol@LB@Hybridization Energy -6.30818 kcal/mol@LB@Unfolding Energy - mRNA 2.04371 kcal/mol@LB@Unfolding Energy - sRNA 0.318327 kcal/mol@LB@@LB@Position - mRNA 131 -- 139@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 49 -- 55@LB@ |
112 |
0.003594 |
0.1129 |
b3866 |
yihI |
-3.87 |
0.795256 |
171 -- 194 |
53 -- 75 |
activator of Der GTPase |
|
_____________170______________________195\n_____________|________________________|\n5'-GAA...CUAUA_____UAAAA________AGA___ACCAU...GUC-3'\n______________CUGAA_____CGGCUAAA___CGA\n______________||:||_____|:||:|||___|||\n______________GAUUU_____GUCGGUUU___GCU\n3'-AUU...CCGCC_____UAUAA________AG____AAUGC...AUG-5'\n_____________|________________________|\n_____________76_______________________52\n |
181 -- 187 |
59 -- 65 |
-14.4152 kcal/mol |
4.20142 kcal/mol |
6.36326 kcal/mol |
170 195@LB@ | |@LB@5'-GAA...CUAUA UAAAA AGA ACCAU...GUC-3'@LB@ CUGAA CGGCUAAA CGA@LB@ ||:|| |:||:||| |||@LB@ GAUUU GUCGGUUU GCU@LB@3'-AUU...CCGCC UAUAA AG AAUGC...AUG-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -3.87 kcal/mol@LB@Hybridization Energy -14.4152 kcal/mol@LB@Unfolding Energy - mRNA 4.20142 kcal/mol@LB@Unfolding Energy - sRNA 6.36326 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 59 -- 65@LB@ |
78 |
0.001629 |
0.07345 |
b2624 |
alpA |
-3.42 |
0.861549 |
231 -- 237 |
49 -- 55 |
CP4-57 prophage; DNA-binding transcriptional activator |
|
_____________230_____238\n_____________|_______|\n5'-CGC...UACUA_______CAGCG...AAU-3'\n______________CGGUUAC\n______________||:||||\n______________GCUAAUG\n3'-AUU...UUUAG_______CACUU...AUG-5'\n_____________|_______|\n_____________56______48\n |
231 -- 237 |
49 -- 55 |
-7.04991 kcal/mol |
3.33366 kcal/mol |
0.311712 kcal/mol |
230 238@LB@ | |@LB@5'-CGC...UACUA CAGCG...AAU-3'@LB@ CGGUUAC@LB@ ||:||||@LB@ GCUAAUG@LB@3'-AUU...UUUAG CACUU...AUG-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -7.04991 kcal/mol@LB@Unfolding Energy - mRNA 3.33366 kcal/mol@LB@Unfolding Energy - sRNA 0.311712 kcal/mol@LB@@LB@Position - mRNA 231 -- 237@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
113 |
0.003703 |
0.1147 |
b1728 |
ydjM |
-2.69 |
0.937889 |
161 -- 167 |
1 -- 7 |
inner membrane protein regulated by LexA |
|
_____________160_____168\n_____________|_______|\n5'-CGC...UAAAA_______ACUGU...AUA-3'\n______________AUCCUAU\n______________|:||||:\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-7.15055 kcal/mol |
2.44298 kcal/mol |
2.03949 kcal/mol |
160 168@LB@ | |@LB@5'-CGC...UAAAA ACUGU...AUA-3'@LB@ AUCCUAU@LB@ |:||||:@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -2.69 kcal/mol@LB@Hybridization Energy -7.15055 kcal/mol@LB@Unfolding Energy - mRNA 2.44298 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |