153 |
0.016 |
0.3359 |
b2167 |
fruA |
-4.10 |
0.476180 |
191 -- 199 |
37 -- 45 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________190_______200\n_____________|_________|\n5'-CGC...AGCAG_________AAUGA...AAA-3'\n______________GAGAGGCAU\n______________:|||:|||:\n______________UUCUUCGUG\n3'-UUU...AUUCG_________AAUUU...CAA-5'\n_____________|_________|\n_____________46________36\n |
193 -- 199 |
37 -- 43 |
-10.9543 kcal/mol |
1.97714 kcal/mol |
4.8783 kcal/mol |
190 200@LB@ | |@LB@5'-CGC...AGCAG AAUGA...AAA-3'@LB@ GAGAGGCAU@LB@ :|||:|||:@LB@ UUCUUCGUG@LB@3'-UUU...AUUCG AAUUU...CAA-5'@LB@ | |@LB@ 46 36@LB@@LB@@LB@Energy -4.10 kcal/mol@LB@Hybridization Energy -10.9543 kcal/mol@LB@Unfolding Energy - mRNA 1.97714 kcal/mol@LB@Unfolding Energy - sRNA 4.8783 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 37 -- 45@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
58 |
0.002968 |
0.1645 |
b0421 |
ispA |
-9.70 |
0.019970 |
54 -- 76 |
25 -- 47 |
geranyltranstransferase |
|
_____________53______________________77\n_____________|_______________________|\n5'-CUG...CCGCU_G__________GAAC_______AACGC...UCG-3'\n______________G_AAGAGGCGCU____GAGUUCG\n______________|_||||:||:||____:|:||||\n______________C_UUCUUCGUGA____UUUAAGC\n3'-UUU...GAAUU_G__________AUUU_______AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
70 -- 76 |
25 -- 31 |
-22.3845 kcal/mol |
6.43631 kcal/mol |
6.25056 kcal/mol |
53 77@LB@ | |@LB@5'-CUG...CCGCU G GAAC AACGC...UCG-3'@LB@ G AAGAGGCGCU GAGUUCG@LB@ | ||||:||:|| :|:||||@LB@ C UUCUUCGUGA UUUAAGC@LB@3'-UUU...GAAUU G AUUU AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -22.3845 kcal/mol@LB@Unfolding Energy - mRNA 6.43631 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 54 -- 76@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 25 -- 31@LB@ |
2 |
4.936e-07 |
0.0007949 |
b1237 |
hns |
-13.24 |
0.001473 |
195 -- 222 |
26 -- 57 |
global DNA-binding transcriptional dual regulator H-NS |
|
_____________194______________________________223\n_____________|________________________________|\n5'-CUC...AGAUU___ACAA_________________________UGAAC...UAG-3'\n______________ACU____UGAGC__GAAGCACUUAAA__AUUC\n______________|||____|:|||__||||||||||||__||||\n______________UGA____AUUCG__CUUCGUGAAUUU__UAAG\n3'-UUU...UACUU___ACGA_____UU____________UU____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
212 -- 218 |
32 -- 38 |
-22.6274 kcal/mol |
3.10903 kcal/mol |
6.27605 kcal/mol |
194 223@LB@ | |@LB@5'-CUC...AGAUU ACAA UGAAC...UAG-3'@LB@ ACU UGAGC GAAGCACUUAAA AUUC@LB@ ||| |:||| |||||||||||| ||||@LB@ UGA AUUCG CUUCGUGAAUUU UAAG@LB@3'-UUU...UACUU ACGA UU UU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -22.6274 kcal/mol@LB@Unfolding Energy - mRNA 3.10903 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 195 -- 222@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 32 -- 38@LB@ |
94 |
0.006975 |
0.2379 |
b1284 |
yciT |
-8.66 |
0.039674 |
34 -- 64 |
15 -- 42 |
global regulator of transcription; DeoR family |
|
_____________33_______________________________65\n_____________|________________________________|\n5'-GCA...AUCUC___A________GCA___C_____________UUGCU...CCA-3'\n______________GAG_UACUUAAA___GAA_UC_UUGCGCCAGG\n______________:||_:|||||||___:||_||_||:|:|||||\n______________UUC_GUGAAUUU___UUU_AG_AAUGUGGUCC\n3'-UUU...CGUUC__________________A__C__________UUUAG...CAA-5'\n_____________|________________________________|\n_____________43_______________________________14\n |
58 -- 64 |
15 -- 21 |
-23.4161 kcal/mol |
5.55126 kcal/mol |
9.20431 kcal/mol |
33 65@LB@ | |@LB@5'-GCA...AUCUC A GCA C UUGCU...CCA-3'@LB@ GAG UACUUAAA GAA UC UUGCGCCAGG@LB@ :|| :||||||| :|| || ||:|:|||||@LB@ UUC GUGAAUUU UUU AG AAUGUGGUCC@LB@3'-UUU...CGUUC A C UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -23.4161 kcal/mol@LB@Unfolding Energy - mRNA 5.55126 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 34 -- 64@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
162 |
0.01764 |
0.3508 |
b0654 |
gltJ |
-6.81 |
0.123116 |
18 -- 45 |
15 -- 42 |
glutamate/aspartate ABC transporter permease |
|
_____________17___________________________46\n_____________|____________________________|\n5'-CAA...UGACA_______GAACU____ACAAGA______GGCGG...UCG-3'\n______________AGGCACU_____AAUU______ACCAGG\n______________|:|||||_____||||______||||||\n______________UUCGUGA_____UUAA______UGGUCC\n3'-UUU...CGUUC_______AUUUU____GCAAUG______UUUAG...CAA-5'\n_____________|____________________________|\n_____________43___________________________14\n |
18 -- 24 |
36 -- 42 |
-19.3193 kcal/mol |
3.30421 kcal/mol |
9.20431 kcal/mol |
17 46@LB@ | |@LB@5'-CAA...UGACA GAACU ACAAGA GGCGG...UCG-3'@LB@ AGGCACU AAUU ACCAGG@LB@ |:||||| |||| ||||||@LB@ UUCGUGA UUAA UGGUCC@LB@3'-UUU...CGUUC AUUUU GCAAUG UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -19.3193 kcal/mol@LB@Unfolding Energy - mRNA 3.30421 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 18 -- 45@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
118 |
0.009927 |
0.271 |
b1654 |
grxD |
-11.37 |
0.006167 |
180 -- 241 |
7 -- 60 |
glutaredoxin-4 |
|
_____________179_______________________________________________________________242\n_____________|_________________________________________________________________|\n5'-AAA...GUAAA________AGG________CAAUG_____CACUAUCG_______C_A_________AUUG_____AAACC...CUG-3'\n______________GAAGUUUG___AAGCAAGA_____AGCAC________AAAAAAU_C___ACGCCAG_____CUGA\n______________|||::|||___||||||||_____|||||________|||||||_|___||:||||_____||||\n______________CUUUGAAC___UUCGUUCU_____UCGUG________UUUUUUA_G___UGUGGUC_____GACU\n3'-UUU...CCCUA________GAA__________________AA_____________A_CAA_______CUUUA____ACACAA-5'\n_____________|_________________________________________________________________|\n_____________61________________________________________________________________6\n |
227 -- 233 |
16 -- 22 |
-34.247 kcal/mol |
9.03509 kcal/mol |
13.8468 kcal/mol |
179 242@LB@ | |@LB@5'-AAA...GUAAA AGG CAAUG CACUAUCG C A AUUG AAACC...CUG-3'@LB@ GAAGUUUG AAGCAAGA AGCAC AAAAAAU C ACGCCAG CUGA@LB@ |||::||| |||||||| ||||| ||||||| | ||:|||| ||||@LB@ CUUUGAAC UUCGUUCU UCGUG UUUUUUA G UGUGGUC GACU@LB@3'-UUU...CCCUA GAA AA A CAA CUUUA ACACAA-5'@LB@ | |@LB@ 61 6@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -34.247 kcal/mol@LB@Unfolding Energy - mRNA 9.03509 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 180 -- 241@LB@Position - sRNA 7 -- 60@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 16 -- 22@LB@ |
90 |
0.006331 |
0.2266 |
b1710 |
btuE |
-7.57 |
0.078405 |
256 -- 270 |
25 -- 39 |
glutathione peroxidase |
|
_____________255_____________271\n_____________|_______________|\n5'-GCA...GACCA____G__________CCGGU...UCG-3'\n______________CGCU_GAGAAGUUCG\n______________|:||_:|:||:||||\n______________GUGA_UUUUUUAAGC\n3'-UUU...UCUUC____A__________AAUGU...CAA-5'\n_____________|_______________|\n_____________40______________24\n |
264 -- 270 |
25 -- 31 |
-13.949 kcal/mol |
4.72897 kcal/mol |
1.64678 kcal/mol |
255 271@LB@ | |@LB@5'-GCA...GACCA G CCGGU...UCG-3'@LB@ CGCU GAGAAGUUCG@LB@ |:|| :|:||:||||@LB@ GUGA UUUUUUAAGC@LB@3'-UUU...UCUUC A AAUGU...CAA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -13.949 kcal/mol@LB@Unfolding Energy - mRNA 4.72897 kcal/mol@LB@Unfolding Energy - sRNA 1.64678 kcal/mol@LB@@LB@Position - mRNA 256 -- 270@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 25 -- 31@LB@ |
182 |
0.02157 |
0.3768 |
b0887 |
cydD |
-7.84 |
0.066788 |
30 -- 38 |
33 -- 41 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________29________39\n_____________|_________|\n5'-AUU...AUGGC_________UGCGG...UGA-3'\n______________AGCACUUGA\n______________|||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
32 -- 38 |
33 -- 39 |
-10.6359 kcal/mol |
1.18174 kcal/mol |
1.6188 kcal/mol |
29 39@LB@ | |@LB@5'-AUU...AUGGC UGCGG...UGA-3'@LB@ AGCACUUGA@LB@ |||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -10.6359 kcal/mol@LB@Unfolding Energy - mRNA 1.18174 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 30 -- 38@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 33 -- 39@LB@ |
152 |
0.01589 |
0.3359 |
b3428 |
glgP |
-3.42 |
0.610648 |
252 -- 258 |
36 -- 42 |
glycogen phosphorylase |
|
_____________251_____259\n_____________|_______|\n5'-CCA...CUCUU_______CUAUC...CGG-3'\n______________AAGCACU\n______________|||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
252 -- 258 |
36 -- 42 |
-8.34293 kcal/mol |
3.32239 kcal/mol |
1.60154 kcal/mol |
251 259@LB@ | |@LB@5'-CCA...CUCUU CUAUC...CGG-3'@LB@ AAGCACU@LB@ |||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -8.34293 kcal/mol@LB@Unfolding Energy - mRNA 3.32239 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 36 -- 42@LB@ |
115 |
0.009659 |
0.2693 |
b0155 |
clcA |
-5.80 |
0.214551 |
108 -- 124 |
25 -- 40 |
H(+)/Cl(-) exchange transporter |
|
_____________107_______________125\n_____________|_________________|\n5'-AGU...UUUGU__________C___A__CUUUG...UAG-3'\n______________GCAUUUGAAA_AUU_CG\n______________|||:||:|||_|||_||\n______________CGUGAAUUUU_UAA_GC\n3'-UUU...UUCUU__________U______AAUGU...CAA-5'\n_____________|_________________|\n_____________41________________24\n |
109 -- 115 |
33 -- 39 |
-11.0899 kcal/mol |
3.63771 kcal/mol |
1.64821 kcal/mol |
107 125@LB@ | |@LB@5'-AGU...UUUGU C A CUUUG...UAG-3'@LB@ GCAUUUGAAA AUU CG@LB@ |||:||:||| ||| ||@LB@ CGUGAAUUUU UAA GC@LB@3'-UUU...UUCUU U AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -5.80 kcal/mol@LB@Hybridization Energy -11.0899 kcal/mol@LB@Unfolding Energy - mRNA 3.63771 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 108 -- 124@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 33 -- 39@LB@ |