| 38 |
0.00143 |
0.1212 |
b3315 |
rplV |
-7.95 |
0.062235 |
2 -- 19 |
23 -- 40 |
50S ribosomal subunit protein L22 |
|
_____________1__________________20\n_____________|__________________|\n__________5'-C________UCCCG_____CAACG...UGG-3'\n______________GCACUUGG_____UCGUU\n______________||||||::_____|||||\n______________CGUGAAUU_____AGCAA\n3'-UUU...UUCUU________UUUUA_____UGUGG...CAA-5'\n_____________|__________________|\n_____________41_________________22\n |
3 -- 9 |
33 -- 39 |
-14.4443 kcal/mol |
4.84591 kcal/mol |
1.64885 kcal/mol |
1 20@LB@ | |@LB@ 5'-C UCCCG CAACG...UGG-3'@LB@ GCACUUGG UCGUU@LB@ ||||||:: |||||@LB@ CGUGAAUU AGCAA@LB@3'-UUU...UUCUU UUUUA UGUGG...CAA-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -14.4443 kcal/mol@LB@Unfolding Energy - mRNA 4.84591 kcal/mol@LB@Unfolding Energy - sRNA 1.64885 kcal/mol@LB@@LB@Position - mRNA 2 -- 19@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 128 |
0.01225 |
0.3033 |
b3299 |
rpmJ |
-5.94 |
0.199813 |
193 -- 212 |
24 -- 42 |
50S ribosomal subunit protein L36 |
|
_____________192__________________213\n_____________|____________________|\n5'-GGA...ACGGA_____AAAAU__________GCUUC...AUA-3'\n______________GAGUA_____GAAAGUUCGU\n______________:||:|_____:|||:|||||\n______________UUCGU_____UUUUUAAGCA\n3'-UUU...CGUUC_____GAAU___________AUGUG...CAA-5'\n_____________|____________________|\n_____________43___________________23\n |
206 -- 212 |
24 -- 30 |
-12.4383 kcal/mol |
4.85088 kcal/mol |
1.64896 kcal/mol |
192 213@LB@ | |@LB@5'-GGA...ACGGA AAAAU GCUUC...AUA-3'@LB@ GAGUA GAAAGUUCGU@LB@ :||:| :|||:|||||@LB@ UUCGU UUUUUAAGCA@LB@3'-UUU...CGUUC GAAU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -12.4383 kcal/mol@LB@Unfolding Energy - mRNA 4.85088 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 193 -- 212@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 141 |
0.01363 |
0.3114 |
b0767 |
pgl |
-6.62 |
0.137481 |
178 -- 199 |
36 -- 55 |
6-phosphogluconolactonase |
|
_____________177____________________200\n_____________|______________________|\n5'-UCA...GUCAG_____A__U__A__________CAUGA...AUG-3'\n______________UUGCU_AA_GC_AAGGAGCAUU\n______________|||||_||_||_|||:||||:|\n______________AACGA_UU_CG_UUCUUCGUGA\n3'-UUU...CUUUG_____A________________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
193 -- 199 |
36 -- 42 |
-19.0667 kcal/mol |
6.27112 kcal/mol |
6.17795 kcal/mol |
177 200@LB@ | |@LB@5'-UCA...GUCAG A U A CAUGA...AUG-3'@LB@ UUGCU AA GC AAGGAGCAUU@LB@ ||||| || || |||:||||:|@LB@ AACGA UU CG UUCUUCGUGA@LB@3'-UUU...CUUUG A AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.62 kcal/mol@LB@Hybridization Energy -19.0667 kcal/mol@LB@Unfolding Energy - mRNA 6.27112 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 178 -- 199@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 41 |
0.001644 |
0.1292 |
b1918 |
yecS |
-7.37 |
0.088723 |
192 -- 214 |
37 -- 60 |
ABC family putative inner membrane permease |
|
_____________191_______________________215\n_____________|_________________________|\n5'-GGC...CUCCG__________CAU_______A____ACAAC...GCU-3'\n______________GAAAC__GCU___GCAAGAA_GUAU\n______________|||||__|||___|||||||_|:|:\n______________CUUUG__CGA___CGUUCUU_CGUG\n3'-UUU...CCCUA_____AA___AUU____________AAUUU...CAA-5'\n_____________|_________________________|\n_____________61________________________36\n |
203 -- 209 |
41 -- 47 |
-18.5053 kcal/mol |
4.89056 kcal/mol |
6.24651 kcal/mol |
191 215@LB@ | |@LB@5'-GGC...CUCCG CAU A ACAAC...GCU-3'@LB@ GAAAC GCU GCAAGAA GUAU@LB@ ||||| ||| ||||||| |:|:@LB@ CUUUG CGA CGUUCUU CGUG@LB@3'-UUU...CCCUA AA AUU AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -18.5053 kcal/mol@LB@Unfolding Energy - mRNA 4.89056 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 192 -- 214@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 19 |
0.0004926 |
0.08107 |
b0820 |
ybiT |
-10.62 |
0.010514 |
37 -- 84 |
2 -- 44 |
ABC-F family putative regulatory ATPase |
|
_____________36________________________________________________85\n_____________|_________________________________________________|\n5'-CCU...GUAUU________A___U_______A__CCA__U_A___U______A_______ACGAA...UUG-3'\n______________GGAAGCGC_UUA__AAGUUC_UU___GC_C_CAG_GAAAUC_GAUGUGU\n______________:|||||:|_|||__||:|||_||___:|_|_|||_||||||_|||||||\n______________UCUUCGUG_AAU__UUUAAG_AA___UG_G_GUC_CUUUAG_CUACACA\n3'-UUU...UUCGU____________UU______C_______U____________A_______A-5'\n_____________|_________________________________________________|\n_____________45________________________________________________1\n |
38 -- 44 |
37 -- 43 |
-34.6599 kcal/mol |
11.843 kcal/mol |
12.1934 kcal/mol |
36 85@LB@ | |@LB@5'-CCU...GUAUU A U A CCA U A U A ACGAA...UUG-3'@LB@ GGAAGCGC UUA AAGUUC UU GC C CAG GAAAUC GAUGUGU@LB@ :|||||:| ||| ||:||| || :| | ||| |||||| |||||||@LB@ UCUUCGUG AAU UUUAAG AA UG G GUC CUUUAG CUACACA@LB@3'-UUU...UUCGU UU C U A A-5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -34.6599 kcal/mol@LB@Unfolding Energy - mRNA 11.843 kcal/mol@LB@Unfolding Energy - sRNA 12.1934 kcal/mol@LB@@LB@Position - mRNA 37 -- 84@LB@Position - sRNA 2 -- 44@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 5 |
2.271e-05 |
0.01463 |
b0476 |
aes |
-9.47 |
0.023317 |
2 -- 45 |
10 -- 53 |
acetyl esterase |
|
_____________1______________________________________________46\n_____________|______________________________________________|\n__________5'-C_____CG_________AUGUUU_____UA_________________UCAUG...CAA-3'\n______________GUUUA___GGGAAGUA______GGAUU__CGUU_UACCGGGAAAUU\n______________|:|||___::||||:|______::|||__||||_:|||:||||||:\n______________CGAAU___UUCUUCGU______UUUAA__GCAA_GUGGUCCUUUAG\n3'-UUU...UUGAA_____UCG________GAAUUU___________U____________ACUAC...CAA-5'\n_____________|______________________________________________|\n_____________54_____________________________________________9\n |
39 -- 45 |
10 -- 16 |
-31.5647 kcal/mol |
8.26599 kcal/mol |
13.8307 kcal/mol |
1 46@LB@ | |@LB@ 5'-C CG AUGUUU UA UCAUG...CAA-3'@LB@ GUUUA GGGAAGUA GGAUU CGUU UACCGGGAAAUU@LB@ |:||| ::||||:| ::||| |||| :|||:||||||:@LB@ CGAAU UUCUUCGU UUUAA GCAA GUGGUCCUUUAG@LB@3'-UUU...UUGAA UCG GAAUUU U ACUAC...CAA-5'@LB@ | |@LB@ 54 9@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -31.5647 kcal/mol@LB@Unfolding Energy - mRNA 8.26599 kcal/mol@LB@Unfolding Energy - sRNA 13.8307 kcal/mol@LB@@LB@Position - mRNA 2 -- 45@LB@Position - sRNA 10 -- 53@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 37 |
0.00139 |
0.121 |
b2222 |
atoA |
-4.53 |
0.397320 |
265 -- 276 |
25 -- 38 |
acetyl-CoA:acetoacetyl-CoA transferase beta subunit |
|
_____________264____________277\n_____________|______________|\n5'-CGC...CGUUA______________GUUUA...AUU-3'\n______________ACUUAGGGA__UCG\n______________|||||:::|__|||\n______________UGAAUUUUU__AGC\n3'-UUU...CUUCG_________UA___AAUGU...CAA-5'\n_____________|______________|\n_____________39_____________24\n |
266 -- 272 |
31 -- 37 |
-7.73128 kcal/mol |
1.76584 kcal/mol |
1.4343 kcal/mol |
264 277@LB@ | |@LB@5'-CGC...CGUUA GUUUA...AUU-3'@LB@ ACUUAGGGA UCG@LB@ |||||:::| |||@LB@ UGAAUUUUU AGC@LB@3'-UUU...CUUCG UA AAUGU...CAA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -4.53 kcal/mol@LB@Hybridization Energy -7.73128 kcal/mol@LB@Unfolding Energy - mRNA 1.76584 kcal/mol@LB@Unfolding Energy - sRNA 1.4343 kcal/mol@LB@@LB@Position - mRNA 265 -- 276@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 76 |
0.004539 |
0.1924 |
b1722 |
ydiY |
-10.86 |
0.008894 |
80 -- 126 |
13 -- 55 |
acid-inducible putative outer membrane protein |
|
_____________79_______________________________________________127\n_____________|________________________________________________|\n5'-UAA...AUACA__________UAUUC___C___UUUAU__________CUUU_______CGCUA...UGG-3'\n______________UUGC_UAAGU_____GCG_CUU_____AAUUCGUUAC____CCAGGGA\n______________||||_||||:_____||:_|||_____||||||||||____|||||:|\n______________AACG_AUUCG_____CGU_GAA_____UUAAGCAAUG____GGUCCUU\n3'-UUU...CUUUG____A_____UUCUU_______UUUU___________U__________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________56_______________________________________________12\n |
109 -- 115 |
21 -- 27 |
-32.5898 kcal/mol |
7.90727 kcal/mol |
13.8238 kcal/mol |
79 127@LB@ | |@LB@5'-UAA...AUACA UAUUC C UUUAU CUUU CGCUA...UGG-3'@LB@ UUGC UAAGU GCG CUU AAUUCGUUAC CCAGGGA@LB@ |||| ||||: ||: ||| |||||||||| |||||:|@LB@ AACG AUUCG CGU GAA UUAAGCAAUG GGUCCUU@LB@3'-UUU...CUUUG A UUCUU UUUU U UAGAC...CAA-5'@LB@ | |@LB@ 56 12@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -32.5898 kcal/mol@LB@Unfolding Energy - mRNA 7.90727 kcal/mol@LB@Unfolding Energy - sRNA 13.8238 kcal/mol@LB@@LB@Position - mRNA 80 -- 126@LB@Position - sRNA 13 -- 55@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 83 |
0.005546 |
0.2146 |
b0221 |
fadE |
-11.24 |
0.006780 |
20 -- 32 |
37 -- 49 |
acyl coenzyme A dehydrogenase |
|
_____________19____________33\n_____________|_____________|\n5'-GUG...GCCAA_____________GGGCA...GGA-3'\n______________AAGCGAGAAGUAC\n______________||||:|||||:||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
26 -- 32 |
37 -- 43 |
-19.9972 kcal/mol |
2.7283 kcal/mol |
6.03369 kcal/mol |
19 33@LB@ | |@LB@5'-GUG...GCCAA GGGCA...GGA-3'@LB@ AAGCGAGAAGUAC@LB@ ||||:|||||:||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.9972 kcal/mol@LB@Unfolding Energy - mRNA 2.7283 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 121 |
0.01057 |
0.2813 |
b0452 |
tesB |
-8.75 |
0.037433 |
210 -- 223 |
26 -- 40 |
acyl-CoA thioesterase 2 |
|
_____________209_____________224\n_____________|_______________|\n5'-CAA...GUCAG_______________ACUGA...AGG-3'\n______________GCGC_UAAAAAAUUU\n______________||:|_|||||||||:\n______________CGUG_AUUUUUUAAG\n3'-UUU...UUCUU____A__________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
217 -- 223 |
26 -- 32 |
-10.9054 kcal/mol |
0.50684 kcal/mol |
1.64811 kcal/mol |
209 224@LB@ | |@LB@5'-CAA...GUCAG ACUGA...AGG-3'@LB@ GCGC UAAAAAAUUU@LB@ ||:| |||||||||:@LB@ CGUG AUUUUUUAAG@LB@3'-UUU...UUCUU A CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -10.9054 kcal/mol@LB@Unfolding Energy - mRNA 0.50684 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 26 -- 32@LB@ |
