74 |
0.001232 |
0.05856 |
b3139 |
agaC |
-9.25 |
0.073815 |
213 -- 219 |
1 -- 7 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________212_____220\n_____________|_______|\n5'-AAC...AAAUA_______UUCAG...CGA-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
213 -- 219 |
1 -- 7 |
-11.8132 kcal/mol |
0.545455 kcal/mol |
2.03949 kcal/mol |
212 220@LB@ | |@LB@5'-AAC...AAAUA UUCAG...CGA-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -11.8132 kcal/mol@LB@Unfolding Energy - mRNA 0.545455 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 213 -- 219@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 1 -- 7@LB@ |
75 |
0.001328 |
0.06227 |
b1748 |
astC |
-8.39 |
0.124654 |
121 -- 127 |
1 -- 7 |
succinylornithine transaminase PLP-dependent |
|
_____________120_____128\n_____________|_______|\n5'-UCA...CACGA_______AAUCU...UGU-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.9071 kcal/mol |
1.50434 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UCA...CACGA AAUCU...UGU-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -11.9071 kcal/mol@LB@Unfolding Energy - mRNA 1.50434 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
76 |
0.001511 |
0.06993 |
b3465 |
rsmD |
-10.43 |
0.033857 |
227 -- 244 |
49 -- 65 |
16S rRNA m(2)G966 methyltransferase SAM-dependent |
|
_____________226________________245\n_____________|__________________|\n5'-UUG...GGCAG____________C_____UGGCG...GCC-3'\n______________CGGCCAAAUCCG_AUUAU\n______________|:||||||||||_||||:\n______________GUCGGUUUAGGC_UAAUG\n3'-AUU...UAUAA__________________CACUU...AUG-5'\n_____________|__________________|\n_____________66_________________48\n |
232 -- 238 |
54 -- 60 |
-22.129 kcal/mol |
5.5281 kcal/mol |
6.19707 kcal/mol |
226 245@LB@ | |@LB@5'-UUG...GGCAG C UGGCG...GCC-3'@LB@ CGGCCAAAUCCG AUUAU@LB@ |:|||||||||| ||||:@LB@ GUCGGUUUAGGC UAAUG@LB@3'-AUU...UAUAA CACUU...AUG-5'@LB@ | |@LB@ 66 48@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -22.129 kcal/mol@LB@Unfolding Energy - mRNA 5.5281 kcal/mol@LB@Unfolding Energy - sRNA 6.19707 kcal/mol@LB@@LB@Position - mRNA 227 -- 244@LB@Position - sRNA 49 -- 65@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 54 -- 60@LB@ |
77 |
0.00159 |
0.07263 |
b2159 |
nfo |
-11.23 |
0.018951 |
134 -- 154 |
4 -- 22 |
endonuclease IV with intrinsic 3'-5' exonuclease activity |
|
_____________133___________________155\n_____________|_____________________|\n5'-GAC...CCACU__________C____UA____GCUAU...CCA-3'\n______________ACAUCUUGCU_CUGU__ACCC\n______________|||||||:|:_||||__||||\n______________UGUAGAAUGG_GACA__UGGG\n3'-AUU...UAUCU__________A__________AUG-5'\n_____________|_____________________|\n_____________23____________________3\n |
134 -- 140 |
16 -- 22 |
-23.2044 kcal/mol |
4.007 kcal/mol |
7.98841 kcal/mol |
133 155@LB@ | |@LB@5'-GAC...CCACU C UA GCUAU...CCA-3'@LB@ ACAUCUUGCU CUGU ACCC@LB@ |||||||:|: |||| ||||@LB@ UGUAGAAUGG GACA UGGG@LB@3'-AUU...UAUCU A AUG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -23.2044 kcal/mol@LB@Unfolding Energy - mRNA 4.007 kcal/mol@LB@Unfolding Energy - sRNA 7.98841 kcal/mol@LB@@LB@Position - mRNA 134 -- 154@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 16 -- 22@LB@ |
78 |
0.001629 |
0.07345 |
b2624 |
alpA |
-3.42 |
0.861549 |
231 -- 237 |
49 -- 55 |
CP4-57 prophage; DNA-binding transcriptional activator |
|
_____________230_____238\n_____________|_______|\n5'-CGC...UACUA_______CAGCG...AAU-3'\n______________CGGUUAC\n______________||:||||\n______________GCUAAUG\n3'-AUU...UUUAG_______CACUU...AUG-5'\n_____________|_______|\n_____________56______48\n |
231 -- 237 |
49 -- 55 |
-7.04991 kcal/mol |
3.33366 kcal/mol |
0.311712 kcal/mol |
230 238@LB@ | |@LB@5'-CGC...UACUA CAGCG...AAU-3'@LB@ CGGUUAC@LB@ ||:||||@LB@ GCUAAUG@LB@3'-AUU...UUUAG CACUU...AUG-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -7.04991 kcal/mol@LB@Unfolding Energy - mRNA 3.33366 kcal/mol@LB@Unfolding Energy - sRNA 0.311712 kcal/mol@LB@@LB@Position - mRNA 231 -- 237@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
80 |
0.001713 |
0.07533 |
b1343 |
dbpA |
-13.62 |
0.002663 |
221 -- 243 |
1 -- 24 |
ATP-dependent RNA helicase specific for 23S rRNA |
|
_____________220______________________244\n_____________|________________________|\n5'-ACG...ACCCU______________CC_____A__UCACG...CGC-3'\n______________GAAUGUUUUGCCUC___GCCC_AC\n______________|||::|:||:||||___:|||_||\n______________CUUGUAGAAUGGAG___UGGG_UG\n3'-AUU...UCUAU______________ACA____A__-5'\n_____________|_______________________|\n_____________25______________________1\n |
228 -- 234 |
11 -- 17 |
-24.5457 kcal/mol |
2.92371 kcal/mol |
8.02158 kcal/mol |
220 244@LB@ | |@LB@5'-ACG...ACCCU CC A UCACG...CGC-3'@LB@ GAAUGUUUUGCCUC GCCC AC@LB@ |||::|:||:|||| :||| ||@LB@ CUUGUAGAAUGGAG UGGG UG@LB@3'-AUU...UCUAU ACA A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -24.5457 kcal/mol@LB@Unfolding Energy - mRNA 2.92371 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 221 -- 243@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 11 -- 17@LB@ |
81 |
0.001761 |
0.07647 |
b3311 |
rpsQ |
-9.62 |
0.058411 |
217 -- 225 |
1 -- 9 |
30S ribosomal subunit protein S17 |
|
_____________216_______226\n_____________|_________|\n5'-GGU...AAUCC_________AAGGU...UCU-3'\n______________GUACUCUGC\n______________||||:||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
219 -- 225 |
1 -- 7 |
-13.7932 kcal/mol |
2.07071 kcal/mol |
2.12872 kcal/mol |
216 226@LB@ | |@LB@5'-GGU...AAUCC AAGGU...UCU-3'@LB@ GUACUCUGC@LB@ ||||:||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -13.7932 kcal/mol@LB@Unfolding Energy - mRNA 2.07071 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 217 -- 225@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 1 -- 7@LB@ |
82 |
0.001877 |
0.08053 |
b3199 |
lptC |
-13.73 |
0.002422 |
95 -- 106 |
45 -- 56 |
periplasmic membrane-anchored LPS-binding protein; LPS export protein |
|
_____________94___________107\n_____________|____________|\n5'-UAU...GCGCG____________CGCGC...UGG-3'\n______________CCGAUUACGUGA\n______________||||||||||||\n______________GGCUAAUGCACU\n3'-AUU...GUUUA____________UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
100 -- 106 |
45 -- 51 |
-18.6784 kcal/mol |
2.68909 kcal/mol |
2.27945 kcal/mol |
94 107@LB@ | |@LB@5'-UAU...GCGCG CGCGC...UGG-3'@LB@ CCGAUUACGUGA@LB@ ||||||||||||@LB@ GGCUAAUGCACU@LB@3'-AUU...GUUUA UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -18.6784 kcal/mol@LB@Unfolding Energy - mRNA 2.68909 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 95 -- 106@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 45 -- 51@LB@ |
83 |
0.001985 |
0.08414 |
b1901 |
araF |
-10.36 |
0.035498 |
164 -- 171 |
1 -- 8 |
L-arabinose ABC transporter periplasmic binding protein |
|
_____________163______172\n_____________|________|\n5'-UCC...GUUUU________ACAAA...AGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
165 -- 171 |
1 -- 7 |
-13.292 kcal/mol |
0.840759 kcal/mol |
2.11603 kcal/mol |
163 172@LB@ | |@LB@5'-UCC...GUUUU ACAAA...AGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -13.292 kcal/mol@LB@Unfolding Energy - mRNA 0.840759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 164 -- 171@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 1 -- 7@LB@ |
84 |
0.002084 |
0.08729 |
b2067 |
yegE |
-5.99 |
0.414041 |
137 -- 150 |
1 -- 15 |
putative diguanylate cyclase |
|
_____________136_____________151\n_____________|_______________|\n5'-AGU...GUAAA___________A___AUAAA...CGC-3'\n______________ACUUUUGUACU__GC\n______________||:|:|||||:__:|\n______________UGGAGACAUGG__UG\n3'-AUU...UAGAA___________GA__-5'\n_____________|______________|\n_____________16_____________1\n |
141 -- 147 |
5 -- 11 |
-13.6769 kcal/mol |
1.88278 kcal/mol |
5.82808 kcal/mol |
136 151@LB@ | |@LB@5'-AGU...GUAAA A AUAAA...CGC-3'@LB@ ACUUUUGUACU GC@LB@ ||:|:|||||: :|@LB@ UGGAGACAUGG UG@LB@3'-AUU...UAGAA GA -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -13.6769 kcal/mol@LB@Unfolding Energy - mRNA 1.88278 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 137 -- 150@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 5 -- 11@LB@ |