137 |
0.004974 |
0.127 |
b0092 |
ddlB |
-6.99 |
0.263821 |
283 -- 297 |
43 -- 56 |
D-alanine:D-alanine ligase |
|
_____________282_____________298\n_____________|_______________|\n5'-UUC...GUUAG____AC_________GCG-3'\n______________CCGG__UGCGUGAAG\n______________|||:__|:|||||||\n______________GGCU__AUGCACUUC\n3'-AUU...GUUUA____A__________AUUUU...AUG-5'\n_____________|_______________|\n_____________57______________42\n |
291 -- 297 |
43 -- 49 |
-17.3937 kcal/mol |
7.14584 kcal/mol |
3.27327 kcal/mol |
282 298@LB@ | |@LB@5'-UUC...GUUAG AC GCG-3'@LB@ CCGG UGCGUGAAG@LB@ |||: |:|||||||@LB@ GGCU AUGCACUUC@LB@3'-AUU...GUUUA A AUUUU...AUG-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -17.3937 kcal/mol@LB@Unfolding Energy - mRNA 7.14584 kcal/mol@LB@Unfolding Energy - sRNA 3.27327 kcal/mol@LB@@LB@Position - mRNA 283 -- 297@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 43 -- 49@LB@ |
138 |
0.004994 |
0.127 |
b3633 |
waaA |
-9.37 |
0.068643 |
230 -- 259 |
48 -- 75 |
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) |
|
_____________229____________________________260\n_____________|______________________________|\n5'-UCG...CUUCU___CCU__________CU_______A____GCUCU...AAC-3'\n______________CUA___UAUUCAGCCG__GAUCUGG_UACG\n______________|||___|||||||||:__:|||:|:_||||\n______________GAU___AUAAGUCGGU__UUAGGCU_AUGC\n3'-AUU...CCGCC___UUU___________________A____ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
248 -- 254 |
53 -- 59 |
-25.3567 kcal/mol |
8.33931 kcal/mol |
7.67232 kcal/mol |
229 260@LB@ | |@LB@5'-UCG...CUUCU CCU CU A GCUCU...AAC-3'@LB@ CUA UAUUCAGCCG GAUCUGG UACG@LB@ ||| |||||||||: :|||:|: ||||@LB@ GAU AUAAGUCGGU UUAGGCU AUGC@LB@3'-AUU...CCGCC UUU A ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -25.3567 kcal/mol@LB@Unfolding Energy - mRNA 8.33931 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 230 -- 259@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 53 -- 59@LB@ |
139 |
0.005017 |
0.127 |
b2603 |
yfiR |
-11.92 |
0.011246 |
223 -- 243 |
1 -- 19 |
putative periplasmic inhibitor of YfiN activity |
|
_____________222___________________244\n_____________|_____________________|\n5'-GUA...ACUGU___________AUUC______UGACG...GUA-3'\n______________UCUUACUUCUG____UCCUGC\n______________||||||:||||____:|||:|\n______________AGAAUGGAGAC____GGGAUG\n3'-AUU...CUUGU___________AU________-5'\n_____________|____________________|\n_____________20___________________1\n |
227 -- 233 |
9 -- 15 |
-21.8705 kcal/mol |
2.00959 kcal/mol |
7.96751 kcal/mol |
222 244@LB@ | |@LB@5'-GUA...ACUGU AUUC UGACG...GUA-3'@LB@ UCUUACUUCUG UCCUGC@LB@ ||||||:|||| :|||:|@LB@ AGAAUGGAGAC GGGAUG@LB@3'-AUU...CUUGU AU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -21.8705 kcal/mol@LB@Unfolding Energy - mRNA 2.00959 kcal/mol@LB@Unfolding Energy - sRNA 7.96751 kcal/mol@LB@@LB@Position - mRNA 223 -- 243@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 9 -- 15@LB@ |
140 |
0.005114 |
0.1284 |
b3993 |
thiE |
-7.64 |
0.188958 |
243 -- 250 |
4 -- 11 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________242______251\n_____________|________|\n5'-CAC...CAGGA________GGUGG...UAC-3'\n______________CUGUACCC\n______________||||||||\n______________GACAUGGG\n3'-AUU...AUGGA________AUG-5'\n_____________|________|\n_____________12_______3\n |
244 -- 250 |
4 -- 10 |
-13.9053 kcal/mol |
2.83489 kcal/mol |
3.45361 kcal/mol |
242 251@LB@ | |@LB@5'-CAC...CAGGA GGUGG...UAC-3'@LB@ CUGUACCC@LB@ ||||||||@LB@ GACAUGGG@LB@3'-AUU...AUGGA AUG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -13.9053 kcal/mol@LB@Unfolding Energy - mRNA 2.83489 kcal/mol@LB@Unfolding Energy - sRNA 3.45361 kcal/mol@LB@@LB@Position - mRNA 243 -- 250@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 4 -- 10@LB@ |
141 |
0.00519 |
0.1284 |
b3550 |
yiaC |
-7.29 |
0.227336 |
55 -- 76 |
1 -- 22 |
GNAT family putative N-acetyltransferase |
|
_____________54______________________77\n_____________|_______________________|\n5'-AAU...CAUCU_____C______CGAC_______CUAAG...GGC-3'\n______________ACGUC__GCCUC____GCCCUAU\n______________||:||__:||||____:|||||:\n______________UGUAG__UGGAG____UGGGAUG\n3'-AUU...UAUCU_____AA_____ACA________-5'\n_____________|______________________|\n_____________23_____________________1\n |
70 -- 76 |
1 -- 7 |
-20.6815 kcal/mol |
5.4259 kcal/mol |
7.99236 kcal/mol |
54 77@LB@ | |@LB@5'-AAU...CAUCU C CGAC CUAAG...GGC-3'@LB@ ACGUC GCCUC GCCCUAU@LB@ ||:|| :|||| :|||||:@LB@ UGUAG UGGAG UGGGAUG@LB@3'-AUU...UAUCU AA ACA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -20.6815 kcal/mol@LB@Unfolding Energy - mRNA 5.4259 kcal/mol@LB@Unfolding Energy - sRNA 7.99236 kcal/mol@LB@@LB@Position - mRNA 55 -- 76@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 1 -- 7@LB@ |
142 |
0.005204 |
0.1284 |
b3931 |
hslU |
-6.88 |
0.277791 |
3 -- 17 |
52 -- 65 |
molecular chaperone and ATPase component of HslUV protease |
|
_____________2_______________18\n_____________|_______________|\n_________5'-UG________AAA____CUUAU...ACC-3'\n______________CAGCCAGA___CGAU\n______________||||||:|___||||\n______________GUCGGUUU___GCUA\n3'-AUU...UAUAA________AG_____AUGCA...AUG-5'\n_____________|_______________|\n_____________66______________51\n |
4 -- 10 |
58 -- 64 |
-14.8174 kcal/mol |
1.78514 kcal/mol |
6.17277 kcal/mol |
2 18@LB@ | |@LB@ 5'-UG AAA CUUAU...ACC-3'@LB@ CAGCCAGA CGAU@LB@ ||||||:| ||||@LB@ GUCGGUUU GCUA@LB@3'-AUU...UAUAA AG AUGCA...AUG-5'@LB@ | |@LB@ 66 51@LB@@LB@@LB@Energy -6.88 kcal/mol@LB@Hybridization Energy -14.8174 kcal/mol@LB@Unfolding Energy - mRNA 1.78514 kcal/mol@LB@Unfolding Energy - sRNA 6.17277 kcal/mol@LB@@LB@Position - mRNA 3 -- 17@LB@Position - sRNA 52 -- 65@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 58 -- 64@LB@ |
143 |
0.005218 |
0.1284 |
b1922 |
fliA |
-8.86 |
0.094137 |
133 -- 141 |
50 -- 58 |
RNA polymerase sigma 28 (sigma F) factor |
|
_____________132_______142\n_____________|_________|\n5'-AGG...UAAUC_________AAAAC...UUC-3'\n______________GUCCGAUUA\n______________:||||||||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
135 -- 141 |
50 -- 56 |
-11.3914 kcal/mol |
2.23267 kcal/mol |
0.317553 kcal/mol |
132 142@LB@ | |@LB@5'-AGG...UAAUC AAAAC...UUC-3'@LB@ GUCCGAUUA@LB@ :||||||||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -11.3914 kcal/mol@LB@Unfolding Energy - mRNA 2.23267 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 133 -- 141@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 50 -- 56@LB@ |
144 |
0.005273 |
0.1288 |
b1652 |
rnt |
-8.26 |
0.134019 |
203 -- 213 |
48 -- 58 |
RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
|
_____________202_________214\n_____________|___________|\n5'-AAG...CAGAU_______A___CUCAA...CCG-3'\n______________GUCCGAU_ACG\n______________:||||||_|||\n______________UAGGCUA_UGC\n3'-AUU...CGGUU_______A___ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
203 -- 209 |
52 -- 58 |
-12.2442 kcal/mol |
2.4043 kcal/mol |
1.55987 kcal/mol |
202 214@LB@ | |@LB@5'-AAG...CAGAU A CUCAA...CCG-3'@LB@ GUCCGAU ACG@LB@ :|||||| |||@LB@ UAGGCUA UGC@LB@3'-AUU...CGGUU A ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -12.2442 kcal/mol@LB@Unfolding Energy - mRNA 2.4043 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 203 -- 213@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 52 -- 58@LB@ |
145 |
0.005462 |
0.1325 |
b3239 |
yhcO |
-10.93 |
0.023720 |
179 -- 225 |
2 -- 55 |
putative barnase inhibitor |
|
_____________178______________________________________________________226\n_____________|________________________________________________________|\n5'-CUA...CGCCG___A_______C___________AAC______________A_______________AUGAG...GCG-3'\n______________CGA__ACGUGA_GGU____GG_C____AGAU_GAAUAUUU_UACCUUUG_AUUUUG\n______________|||__||||||_:||____||_|____||||_|||:||:|_|||||:||_|:::|:\n______________GCU__UGCACU_UCA____CC_G____UCUA_CUUGUAGA_AUGGAGAC_UGGGAU\n3'-AUU...UUUAG___AA__________UUUU__A_ACUU____U_________________A______G-5'\n_____________|________________________________________________________|\n_____________56_______________________________________________________1\n |
213 -- 219 |
9 -- 15 |
-30.2735 kcal/mol |
6.67064 kcal/mol |
12.6986 kcal/mol |
178 226@LB@ | |@LB@5'-CUA...CGCCG A C AAC A AUGAG...GCG-3'@LB@ CGA ACGUGA GGU GG C AGAU GAAUAUUU UACCUUUG AUUUUG@LB@ ||| |||||| :|| || | |||| |||:||:| |||||:|| |:::|:@LB@ GCU UGCACU UCA CC G UCUA CUUGUAGA AUGGAGAC UGGGAU@LB@3'-AUU...UUUAG AA UUUU A ACUU U A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -30.2735 kcal/mol@LB@Unfolding Energy - mRNA 6.67064 kcal/mol@LB@Unfolding Energy - sRNA 12.6986 kcal/mol@LB@@LB@Position - mRNA 179 -- 225@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 9 -- 15@LB@ |
146 |
0.005604 |
0.1342 |
b1637 |
tyrS |
-10.18 |
0.040102 |
30 -- 71 |
2 -- 50 |
tyrosyl-tRNA synthetase |
|
_____________29________________________________________________72\n_____________|_________________________________________________|\n5'-CAU...UACCA_______AAU___U_CG________U__U____________________AAAAG...CGA-3'\n______________GCGUGAA____GA_G__UGGAAGAU_GA_CGUCUUGC______ACCCUG\n______________:||||||____:|_|__||:|||||_||_|:||||:|______|||||:\n______________UGCACUU____UU_C__ACUUUCUA_CU_GUAGAAUG______UGGGAU\n3'-AUU...GCUAA_______CAUU__C_AG________U__U________GAGACA______G-5'\n_____________|_________________________________________________|\n_____________51________________________________________________1\n |
30 -- 36 |
44 -- 50 |
-35.883 kcal/mol |
13.0482 kcal/mol |
12.6769 kcal/mol |
29 72@LB@ | |@LB@5'-CAU...UACCA AAU U CG U U AAAAG...CGA-3'@LB@ GCGUGAA GA G UGGAAGAU GA CGUCUUGC ACCCUG@LB@ :|||||| :| | ||:||||| || |:||||:| |||||:@LB@ UGCACUU UU C ACUUUCUA CU GUAGAAUG UGGGAU@LB@3'-AUU...GCUAA CAUU C AG U U GAGACA G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -35.883 kcal/mol@LB@Unfolding Energy - mRNA 13.0482 kcal/mol@LB@Unfolding Energy - sRNA 12.6769 kcal/mol@LB@@LB@Position - mRNA 30 -- 71@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 44 -- 50@LB@ |