169 |
0.006985 |
0.1454 |
b0384 |
psiF |
-5.27 |
0.543574 |
221 -- 228 |
1 -- 8 |
PsiF family protein |
|
_____________220______229\n_____________|________|\n5'-CCC...CUGGU________UUUUC...UGA-3'\n______________UACCUUGC\n______________||||:|:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
222 -- 228 |
1 -- 7 |
-9.62499 kcal/mol |
2.26355 kcal/mol |
2.11603 kcal/mol |
220 229@LB@ | |@LB@5'-CCC...CUGGU UUUUC...UGA-3'@LB@ UACCUUGC@LB@ ||||:|:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -5.27 kcal/mol@LB@Hybridization Energy -9.62499 kcal/mol@LB@Unfolding Energy - mRNA 2.26355 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 221 -- 228@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
170 |
0.007042 |
0.1457 |
b3110 |
yhaO |
-10.02 |
0.044877 |
174 -- 180 |
1 -- 7 |
putative transporter |
|
_____________173_____181\n_____________|_______|\n5'-AAU...AAUAA_______AAAAU...UCG-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
174 -- 180 |
1 -- 7 |
-12.6531 kcal/mol |
0.621925 kcal/mol |
2.03949 kcal/mol |
173 181@LB@ | |@LB@5'-AAU...AAUAA AAAAU...UCG-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.6531 kcal/mol@LB@Unfolding Energy - mRNA 0.621925 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 174 -- 180@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
171 |
0.00718 |
0.1466 |
b1708 |
nlpC |
-9.44 |
0.065343 |
288 -- 298 |
49 -- 59 |
putative C40 clan peptidase lipoprotein |
|
_____________287_________299\n_____________|___________|\n5'-AAA...UUUCU___________CG-3'\n______________GAUUCGAUUAC\n______________:||:|||||||\n______________UUAGGCUAAUG\n3'-AUU...UCGGU___________CACUU...AUG-5'\n_____________|___________|\n_____________60__________48\n |
292 -- 298 |
49 -- 55 |
-11.5278 kcal/mol |
1.77565 kcal/mol |
0.318405 kcal/mol |
287 299@LB@ | |@LB@5'-AAA...UUUCU CG-3'@LB@ GAUUCGAUUAC@LB@ :||:|||||||@LB@ UUAGGCUAAUG@LB@3'-AUU...UCGGU CACUU...AUG-5'@LB@ | |@LB@ 60 48@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -11.5278 kcal/mol@LB@Unfolding Energy - mRNA 1.77565 kcal/mol@LB@Unfolding Energy - sRNA 0.318405 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 49 -- 59@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
172 |
0.007198 |
0.1466 |
b2395 |
yfeA |
-7.88 |
0.166321 |
272 -- 292 |
49 -- 69 |
putative diguanylate cyclase |
|
_____________271____________________293\n_____________|______________________|\n5'-ACC...GUACU__________UC____UU____UUCGCCAC-3'\n______________UAUUCAGCUA___CCG__UUAU\n______________||||||||:|___|||__|||:\n______________AUAAGUCGGU___GGC__AAUG\n3'-AUU...AUUUU__________UUA___U_____CACUU...AUG-5'\n_____________|______________________|\n_____________70_____________________48\n |
275 -- 281 |
60 -- 66 |
-16.2546 kcal/mol |
2.18624 kcal/mol |
6.21499 kcal/mol |
271 293@LB@ | |@LB@5'-ACC...GUACU UC UU UUCGCCAC-3'@LB@ UAUUCAGCUA CCG UUAU@LB@ ||||||||:| ||| |||:@LB@ AUAAGUCGGU GGC AAUG@LB@3'-AUU...AUUUU UUA U CACUU...AUG-5'@LB@ | |@LB@ 70 48@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -16.2546 kcal/mol@LB@Unfolding Energy - mRNA 2.18624 kcal/mol@LB@Unfolding Energy - sRNA 6.21499 kcal/mol@LB@@LB@Position - mRNA 272 -- 292@LB@Position - sRNA 49 -- 69@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 60 -- 66@LB@ |
173 |
0.007216 |
0.1466 |
b3650 |
spoT |
-5.39 |
0.520602 |
11 -- 17 |
54 -- 60 |
bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|
_____________10______18\n_____________|_______|\n5'-UAG...GGAAA_______CUGGU...CUC-3'\n______________GGAUCCG\n______________::|||||\n______________UUUAGGC\n3'-AUU...GUCGG_______UAAUG...AUG-5'\n_____________|_______|\n_____________61______53\n |
11 -- 17 |
54 -- 60 |
-6.87427 kcal/mol |
1.21245 kcal/mol |
0.286889 kcal/mol |
10 18@LB@ | |@LB@5'-UAG...GGAAA CUGGU...CUC-3'@LB@ GGAUCCG@LB@ ::|||||@LB@ UUUAGGC@LB@3'-AUU...GUCGG UAAUG...AUG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -6.87427 kcal/mol@LB@Unfolding Energy - mRNA 1.21245 kcal/mol@LB@Unfolding Energy - sRNA 0.286889 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 54 -- 60@LB@ |
174 |
0.007262 |
0.1466 |
b0473 |
htpG |
-8.02 |
0.153160 |
10 -- 17 |
50 -- 57 |
protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase |
|
_____________9________18\n_____________|________|\n5'-UCA...GGCGU________GCGGC...GUG-3'\n______________UCCGGUUG\n______________||||:||:\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
11 -- 17 |
50 -- 56 |
-9.07782 kcal/mol |
0.753256 kcal/mol |
0.317388 kcal/mol |
9 18@LB@ | |@LB@5'-UCA...GGCGU GCGGC...GUG-3'@LB@ UCCGGUUG@LB@ ||||:||:@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -9.07782 kcal/mol@LB@Unfolding Energy - mRNA 0.753256 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 10 -- 17@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 50 -- 56@LB@ |
176 |
0.007357 |
0.147 |
b2905 |
gcvT |
-7.40 |
0.214118 |
198 -- 224 |
6 -- 30 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________197__________________________225\n_____________|____________________________|\n5'-CUG...AGGAC_______CAC____GACU__________GAACA...AAA-3'\n______________AAGAUGG___AACA_____CCUUUGUAC\n______________|||||:|___||||_____|||:|||||\n______________UUCUAUC___UUGU_____GGAGACAUG\n3'-AUU...AGACU______________AGAAU_________GGAUG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
218 -- 224 |
6 -- 12 |
-21.3805 kcal/mol |
5.97871 kcal/mol |
8.02863 kcal/mol |
197 225@LB@ | |@LB@5'-CUG...AGGAC CAC GACU GAACA...AAA-3'@LB@ AAGAUGG AACA CCUUUGUAC@LB@ |||||:| |||| |||:|||||@LB@ UUCUAUC UUGU GGAGACAUG@LB@3'-AUU...AGACU AGAAU GGAUG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 5.97871 kcal/mol@LB@Unfolding Energy - sRNA 8.02863 kcal/mol@LB@@LB@Position - mRNA 198 -- 224@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 6 -- 12@LB@ |
177 |
0.007672 |
0.1511 |
b2307 |
hisM |
-10.48 |
0.032509 |
175 -- 237 |
1 -- 57 |
histidine ABC transporter permease |
|
_____________174__________________________________________________________________238\n_____________|____________________________________________________________________|\n5'-CUC...GCUAC____UGGG___________________CCUGU___C___________AUGAAUA___GAA___G____UGUGG...CGG-3'\n______________UCCG____UGUGAAG___AGGG_CUGA_____GAU_GAA_AUCUUAC_______CUG___ACC_CUGC\n______________||||____:||||||___|:||_||||_____|||_|||_|||||||_______|||___|||_||:|\n______________AGGC____GCACUUC___UUCC_GACU_____CUA_CUU_UAGAAUG_______GAC___UGG_GAUG\n3'-AUU...GGUUU____UAAU_______AUU____A____UU______U___G_______GA________A__________-5'\n_____________|___________________________________________________________________|\n_____________58__________________________________________________________________1\n |
210 -- 216 |
14 -- 20 |
-38.5224 kcal/mol |
15.358 kcal/mol |
12.7026 kcal/mol |
174 238@LB@ | |@LB@5'-CUC...GCUAC UGGG CCUGU C AUGAAUA GAA G UGUGG...CGG-3'@LB@ UCCG UGUGAAG AGGG CUGA GAU GAA AUCUUAC CUG ACC CUGC@LB@ |||| :|||||| |:|| |||| ||| ||| ||||||| ||| ||| ||:|@LB@ AGGC GCACUUC UUCC GACU CUA CUU UAGAAUG GAC UGG GAUG@LB@3'-AUU...GGUUU UAAU AUU A UU U G GA A -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -38.5224 kcal/mol@LB@Unfolding Energy - mRNA 15.358 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 175 -- 237@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 14 -- 20@LB@ |
178 |
0.007695 |
0.1511 |
b4567 |
yjjZ |
-7.25 |
0.231371 |
185 -- 218 |
2 -- 33 |
uncharacterized protein |
|
_____________184_________________________________219\n_____________|___________________________________|\n5'-CGG...AUCAA_______GAU___AU___G____AA______G___GGCAG...GGA-3'\n______________UGAAAGA___GAA__CAU_UUGC__C_GUAC_CUG\n______________|||||||___|||__|||_||:|__|_||||_||:\n______________ACUUUCU___CUU__GUA_AAUG__G_CAUG_GAU\n3'-AUU...UCCAG_______AU_________G____GA_A____G___G-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
185 -- 191 |
27 -- 33 |
-22.8177 kcal/mol |
6.54395 kcal/mol |
9.04499 kcal/mol |
184 219@LB@ | |@LB@5'-CGG...AUCAA GAU AU G AA G GGCAG...GGA-3'@LB@ UGAAAGA GAA CAU UUGC C GUAC CUG@LB@ ||||||| ||| ||| ||:| | |||| ||:@LB@ ACUUUCU CUU GUA AAUG G CAUG GAU@LB@3'-AUU...UCCAG AU G GA A G G-5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -7.25 kcal/mol@LB@Hybridization Energy -22.8177 kcal/mol@LB@Unfolding Energy - mRNA 6.54395 kcal/mol@LB@Unfolding Energy - sRNA 9.04499 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 2 -- 33@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 27 -- 33@LB@ |
179 |
0.007709 |
0.1511 |
b4111 |
proP |
-8.76 |
0.100034 |
225 -- 232 |
49 -- 56 |
proline/glycine betaine transporter |
|
_____________224______233\n_____________|________|\n5'-CAC...UAAAA________CCUUC...GUA-3'\n______________CCGAUUAC\n______________||||||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
226 -- 232 |
49 -- 55 |
-10.6643 kcal/mol |
1.60159 kcal/mol |
0.317884 kcal/mol |
224 233@LB@ | |@LB@5'-CAC...UAAAA CCUUC...GUA-3'@LB@ CCGAUUAC@LB@ ||||||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -10.6643 kcal/mol@LB@Unfolding Energy - mRNA 1.60159 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 225 -- 232@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 49 -- 55@LB@ |