| 56 |
0.0007477 |
0.04704 |
b2777 |
queE |
-11.99 |
0.034574 |
197 -- 232 |
45 -- 77 |
7-carboxy-7-deazaguanine synthase; queosine biosynthesis |
|
_____________196___________________________________233\n_____________|_____________________________________|\n5'-AAU...GAGAA____________CC____UU__C_A__U__UCC____CCUGC...UUG-3'\n______________UGCUAUGCAGUA___CGA__AA_G_GA_GU___AGAC\n______________||||||||||||___|:|__||_|_||_||___||||\n______________ACGAUACGUCAU___GUU__UU_C_CU_CA___UCUG\n3'-UUU...UUAAC____________UAA___UU_______U__U______UUAUA...ACG-5'\n_____________|_____________________________________|\n_____________78____________________________________44\n |
202 -- 208 |
66 -- 72 |
-23.7263 kcal/mol |
6.13303 kcal/mol |
5.60521 kcal/mol |
196 233@LB@ | |@LB@5'-AAU...GAGAA CC UU C A U UCC CCUGC...UUG-3'@LB@ UGCUAUGCAGUA CGA AA G GA GU AGAC@LB@ |||||||||||| |:| || | || || ||||@LB@ ACGAUACGUCAU GUU UU C CU CA UCUG@LB@3'-UUU...UUAAC UAA UU U U UUAUA...ACG-5'@LB@ | |@LB@ 78 44@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -23.7263 kcal/mol@LB@Unfolding Energy - mRNA 6.13303 kcal/mol@LB@Unfolding Energy - sRNA 5.60521 kcal/mol@LB@@LB@Position - mRNA 197 -- 232@LB@Position - sRNA 45 -- 77@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 195 |
0.008697 |
0.1548 |
b0192 |
nlpE |
-11.98 |
0.034903 |
167 -- 206 |
41 -- 78 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166________________________________________207\n_____________|__________________________________________|\n5'-UCA...GCAAA____GCA_____CGGG___AA__________U__________AAAAA...CGC-3'\n______________GUGC___GCGGU____AAU__AAAGAAGGAA___GGAUGGUG\n______________||||___||:||____|||__|||:||||||___:||:::|:\n______________CACG___CGUCA____UUA__UUUUUUCCUU___UCUGUUAU\n3'-UUU...GUUAA____AUA____________AG__________CAU________ACCUC...ACG-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
200 -- 206 |
41 -- 47 |
-26.7874 kcal/mol |
9.04038 kcal/mol |
5.77415 kcal/mol |
166 207@LB@ | |@LB@5'-UCA...GCAAA GCA CGGG AA U AAAAA...CGC-3'@LB@ GUGC GCGGU AAU AAAGAAGGAA GGAUGGUG@LB@ |||| ||:|| ||| |||:|||||| :||:::|:@LB@ CACG CGUCA UUA UUUUUUCCUU UCUGUUAU@LB@3'-UUU...GUUAA AUA AG CAU ACCUC...ACG-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -26.7874 kcal/mol@LB@Unfolding Energy - mRNA 9.04038 kcal/mol@LB@Unfolding Energy - sRNA 5.77415 kcal/mol@LB@@LB@Position - mRNA 167 -- 206@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 3 |
7.57e-07 |
0.0008889 |
b1763 |
topB |
-11.97 |
0.035059 |
233 -- 258 |
1 -- 37 |
DNA topoisomerase III |
|
_____________232___________________________________259\n_____________|_____________________________________|\n5'-UCU...AGUCU_____________________________________CCAAA...GUA-3'\n______________GGCGC_GCG_CCAUUGCU_GAUGU________CCUGC\n______________:||||_:||_||||:|||_||:||________|||||\n______________UCGCG_UGC_GGUAGCGA_CUGCA________GGACG\n3'-UUU...AUACC_____U___G________A_____ACGUAAGU_____-5'\n_____________|____________________________________|\n_____________38___________________________________1\n |
242 -- 248 |
20 -- 26 |
-35.9728 kcal/mol |
8.72127 kcal/mol |
15.288 kcal/mol |
232 259@LB@ | |@LB@5'-UCU...AGUCU CCAAA...GUA-3'@LB@ GGCGC GCG CCAUUGCU GAUGU CCUGC@LB@ :|||| :|| ||||:||| ||:|| |||||@LB@ UCGCG UGC GGUAGCGA CUGCA GGACG@LB@3'-UUU...AUACC U G A ACGUAAGU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -35.9728 kcal/mol@LB@Unfolding Energy - mRNA 8.72127 kcal/mol@LB@Unfolding Energy - sRNA 15.288 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 176 |
0.007245 |
0.145 |
b0397 |
sbcC |
-11.91 |
0.036282 |
117 -- 185 |
1 -- 55 |
exonuclease dsDNA ATP-dependent |
|
_____________116____________________________________________________________________186\n_____________|______________________________________________________________________|\n5'-GAA...GCACU_____AACU______AUCGC___A__________CA__AUCUUUUCACCAC__________A_____C__CGGAG...UUG-3'\n______________GGAAG____GGAUGA_____AGC_GCAACGUCUG__GC_____________GACGUUGCAU_C_CCU_GC\n______________|||||____:||::|_____|||_||||||:|::__||_____________||||||||||_|_|||_||\n______________CCUUC____UCUGUU_____UCG_CGUUGCGGGU__CG_____________CUGCAACGUA_G_GGA_CG\n3'-UUU...UUUUU_____AU________AUACC______________AG__AA_____________________A_U______-5'\n_____________|_____________________________________________________________________|\n_____________56____________________________________________________________________1\n |
170 -- 176 |
10 -- 16 |
-47.2501 kcal/mol |
18.5328 kcal/mol |
16.8092 kcal/mol |
116 186@LB@ | |@LB@5'-GAA...GCACU AACU AUCGC A CA AUCUUUUCACCAC A C CGGAG...UUG-3'@LB@ GGAAG GGAUGA AGC GCAACGUCUG GC GACGUUGCAU C CCU GC@LB@ ||||| :||::| ||| ||||||:|:: || |||||||||| | ||| ||@LB@ CCUUC UCUGUU UCG CGUUGCGGGU CG CUGCAACGUA G GGA CG@LB@3'-UUU...UUUUU AU AUACC AG AA A U -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -47.2501 kcal/mol@LB@Unfolding Energy - mRNA 18.5328 kcal/mol@LB@Unfolding Energy - sRNA 16.8092 kcal/mol@LB@@LB@Position - mRNA 117 -- 185@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 199 |
0.008927 |
0.1548 |
b1019 |
efeB |
-11.91 |
0.036296 |
188 -- 218 |
52 -- 88 |
deferrrochelatase periplasmic |
|
_____________187___________________________________219\n_____________|_____________________________________|\n5'-GCC...GGGAC________GC______________________U____AACGG...CUC-3'\n______________UGGAUUAA____GUUAUGCAGUA___UAAAGA__GAA\n______________:|:||:||____|:|||||||||___:|||:|__|||\n______________GCUUAGUU____CGAUACGUCAU___GUUUUU__CUU\n3'-UUU...AGCAU________AACA___________UAA______UC___CAUUC...ACG-5'\n_____________|_____________________________________|\n_____________89____________________________________51\n |
202 -- 208 |
66 -- 72 |
-22.4719 kcal/mol |
5.89402 kcal/mol |
4.66982 kcal/mol |
187 219@LB@ | |@LB@5'-GCC...GGGAC GC U AACGG...CUC-3'@LB@ UGGAUUAA GUUAUGCAGUA UAAAGA GAA@LB@ :|:||:|| |:||||||||| :|||:| |||@LB@ GCUUAGUU CGAUACGUCAU GUUUUU CUU@LB@3'-UUU...AGCAU AACA UAA UC CAUUC...ACG-5'@LB@ | |@LB@ 89 51@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -22.4719 kcal/mol@LB@Unfolding Energy - mRNA 5.89402 kcal/mol@LB@Unfolding Energy - sRNA 4.66982 kcal/mol@LB@@LB@Position - mRNA 188 -- 218@LB@Position - sRNA 52 -- 88@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 153 |
0.00596 |
0.1368 |
b3892 |
fdoI |
-11.89 |
0.036676 |
181 -- 200 |
31 -- 53 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________180_____________________201\n_____________|_______________________|\n5'-CCA...ACGAA___A___________________AUGAA...UGG-3'\n______________GAG_AAGACGA___GGAGCGCAA\n______________:||_|||||:|___|||||||||\n______________UUC_UUCUGUU___CCUCGCGUU\n3'-UUU...UUUCC___A_______AUA_________GCGGG...ACG-5'\n_____________|_______________________|\n_____________54______________________30\n |
194 -- 200 |
31 -- 37 |
-24.6235 kcal/mol |
2.95491 kcal/mol |
9.77014 kcal/mol |
180 201@LB@ | |@LB@5'-CCA...ACGAA A AUGAA...UGG-3'@LB@ GAG AAGACGA GGAGCGCAA@LB@ :|| |||||:| |||||||||@LB@ UUC UUCUGUU CCUCGCGUU@LB@3'-UUU...UUUCC A AUA GCGGG...ACG-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -24.6235 kcal/mol@LB@Unfolding Energy - mRNA 2.95491 kcal/mol@LB@Unfolding Energy - sRNA 9.77014 kcal/mol@LB@@LB@Position - mRNA 181 -- 200@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 163 |
0.006379 |
0.1377 |
b2210 |
mqo |
-11.85 |
0.037664 |
161 -- 168 |
1 -- 8 |
malate dehydrogenase FAD/NAD(P)-binding domain |
|
_____________160______169\n_____________|________|\n5'-GGC...AAAUC________AAUAA...AUG-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
162 -- 168 |
1 -- 7 |
-15.6271 kcal/mol |
1.41654 kcal/mol |
2.36381 kcal/mol |
160 169@LB@ | |@LB@5'-GGC...AAAUC AAUAA...AUG-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -15.6271 kcal/mol@LB@Unfolding Energy - mRNA 1.41654 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 161 -- 168@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 182 |
0.007798 |
0.1509 |
b3523 |
yhjE |
-11.78 |
0.039321 |
145 -- 165 |
64 -- 85 |
putative MFS transporter; membrane protein |
|
_____________144____________________166\n_____________|______________________|\n5'-AAC...GAAAU____C__U______________AUGGC...UUG-3'\n______________AUCA_UU_UGCUGUGC_GUAAU\n______________||||_||_||||:|||_|||||\n______________UAGU_AA_ACGAUACG_CAUUA\n3'-UUU...AUGCU____U__C________U_____AGUUU...ACG-5'\n_____________|______________________|\n_____________86_____________________63\n |
154 -- 160 |
70 -- 76 |
-18.5967 kcal/mol |
3.10692 kcal/mol |
3.70798 kcal/mol |
144 166@LB@ | |@LB@5'-AAC...GAAAU C U AUGGC...UUG-3'@LB@ AUCA UU UGCUGUGC GUAAU@LB@ |||| || ||||:||| |||||@LB@ UAGU AA ACGAUACG CAUUA@LB@3'-UUU...AUGCU U C U AGUUU...ACG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -18.5967 kcal/mol@LB@Unfolding Energy - mRNA 3.10692 kcal/mol@LB@Unfolding Energy - sRNA 3.70798 kcal/mol@LB@@LB@Position - mRNA 145 -- 165@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 166 |
0.006486 |
0.1377 |
b0440 |
hupB |
-11.63 |
0.043010 |
149 -- 200 |
46 -- 93 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________148______________________________________________________201\n_____________|________________________________________________________|\n5'-CGC...CGCGU______CUUGAAG__U__________GAUAUA______AU__________AG____GUGAA...CUG-3'\n______________UCGUAC_______GA_UCAA__GUGC________AAUU__AAAGAGGAAG__AAGA\n______________||||||_______||_||||__||||________||||__|||:||||||__||||\n______________AGCAUG_______CU_AGUU__CACG________UUAA__UUUUUCCUUC__UUCU\n3'-UUU...GCCGC_______________U____AA____AUACGUCA____GU__________A_____GUUAU...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________45\n |
188 -- 194 |
51 -- 57 |
-29.0191 kcal/mol |
11.8112 kcal/mol |
5.57675 kcal/mol |
148 201@LB@ | |@LB@5'-CGC...CGCGU CUUGAAG U GAUAUA AU AG GUGAA...CUG-3'@LB@ UCGUAC GA UCAA GUGC AAUU AAAGAGGAAG AAGA@LB@ |||||| || |||| |||| |||| |||:|||||| ||||@LB@ AGCAUG CU AGUU CACG UUAA UUUUUCCUUC UUCU@LB@3'-UUU...GCCGC U AA AUACGUCA GU A GUUAU...ACG-5'@LB@ | |@LB@ 94 45@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -29.0191 kcal/mol@LB@Unfolding Energy - mRNA 11.8112 kcal/mol@LB@Unfolding Energy - sRNA 5.57675 kcal/mol@LB@@LB@Position - mRNA 149 -- 200@LB@Position - sRNA 46 -- 93@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
