| 134 |
0.004994 |
0.1313 |
b1518 |
lsrG |
-14.53 |
0.006358 |
14 -- 66 |
30 -- 79 |
autoinducer-2 (AI-2) degrading protein LsrG |
|
_____________13_______________________________________________________67\n_____________|________________________________________________________|\n5'-GAG...GGAAA____________GCUA____UC____CGCUUCU____UG_________________AUUUU...AAG-3'\n______________UGUGCUG_GCAG____UCGA__AGGG_______GGUG____GAUAUGGGGCGUAAU\n______________||||||:_||||____||:|__|:||_______:||:____:||||||:|||:||:\n______________ACACGAU_CGUC____AGUU__UUCC_______UCAU____UUAUACCUCGCGUUG\n3'-UUU...AGUUA_______A____AUUA____UU____U__________UCUG_______________CGGGU...ACG-5'\n_____________|________________________________________________________|\n_____________80_______________________________________________________29\n |
58 -- 64 |
32 -- 38 |
-43.6874 kcal/mol |
15.7058 kcal/mol |
13.4555 kcal/mol |
13 67@LB@ | |@LB@5'-GAG...GGAAA GCUA UC CGCUUCU UG AUUUU...AAG-3'@LB@ UGUGCUG GCAG UCGA AGGG GGUG GAUAUGGGGCGUAAU@LB@ ||||||: |||| ||:| |:|| :||: :||||||:|||:||:@LB@ ACACGAU CGUC AGUU UUCC UCAU UUAUACCUCGCGUUG@LB@3'-UUU...AGUUA A AUUA UU U UCUG CGGGU...ACG-5'@LB@ | |@LB@ 80 29@LB@@LB@@LB@Energy -14.53 kcal/mol@LB@Hybridization Energy -43.6874 kcal/mol@LB@Unfolding Energy - mRNA 15.7058 kcal/mol@LB@Unfolding Energy - sRNA 13.4555 kcal/mol@LB@@LB@Position - mRNA 14 -- 66@LB@Position - sRNA 30 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 63 |
0.00104 |
0.05816 |
b1856 |
mepM |
-14.49 |
0.006560 |
139 -- 249 |
1 -- 88 |
murein DD-endopeptidase space-maker hydrolase septation protein |
|
_____________138________________________________________________________________________________________________________________250\n_____________|__________________________________________________________________________________________________________________|\n5'-CAA...AUUCC__________A___CAACCAG______AGCUGCCU_________AU___U__G__A___AUUAC_______AGAUA____GCUCU_____CC_______UAAUA__________GACCA...UCG-3'\n______________UGAGUCAAUU__GC_______UAUGCG_________GAAAGGAG__UAA_GA_GA_GUG_____GUGCAAC_____GCCC_____GUCGC__UGGCGUU_____AUUUACC_GC\n______________:||:||||||__||_______|||||:_________:||||||:__|||_||_:|_:||_____|:|||||_____||||_____:||||__||:||||_____|||:|||_||\n______________GCUUAGUUAA__CG_______AUACGU_________UUUUCCUU__AUU_CU_UU_UAC_____CGCGUUG_____CGGG_____UAGCG__ACUGCAA_____UAAGUGG_CG\n3'-UUU...AGCAU__________CA_______________CAUUAAGUU________C_______G__A___CU_____________________________A________CG__________A__-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________89________________________________________________________________________________________________________________1\n |
241 -- 247 |
4 -- 10 |
-60.5282 kcal/mol |
25.2709 kcal/mol |
20.7761 kcal/mol |
138 250@LB@ | |@LB@5'-CAA...AUUCC A CAACCAG AGCUGCCU AU U G A AUUAC AGAUA GCUCU CC UAAUA GACCA...UCG-3'@LB@ UGAGUCAAUU GC UAUGCG GAAAGGAG UAA GA GA GUG GUGCAAC GCCC GUCGC UGGCGUU AUUUACC GC@LB@ :||:|||||| || |||||: :||||||: ||| || :| :|| |:||||| |||| :|||| ||:|||| |||:||| ||@LB@ GCUUAGUUAA CG AUACGU UUUUCCUU AUU CU UU UAC CGCGUUG CGGG UAGCG ACUGCAA UAAGUGG CG@LB@3'-UUU...AGCAU CA CAUUAAGUU C G A CU A CG A -5'@LB@ | |@LB@ 89 1@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -60.5282 kcal/mol@LB@Unfolding Energy - mRNA 25.2709 kcal/mol@LB@Unfolding Energy - sRNA 20.7761 kcal/mol@LB@@LB@Position - mRNA 139 -- 249@LB@Position - sRNA 1 -- 88@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 12 |
2.043e-05 |
0.005627 |
b3935 |
priA |
-14.36 |
0.007166 |
198 -- 229 |
1 -- 34 |
Primosome factor n' (replication factor Y) |
|
_____________197________________________________230\n_____________|__________________________________|\n5'-GAA...AUGAU__U___________CC________C______C__UCCGC...GCG-3'\n______________GC_AUGCCCGUUGC___ACGUUGC__UUGCC_GU\n______________||_|:||||:|:||___|||||||__|::||_|:\n______________CG_UGCGGGUAGCG___UGCAACG__AGUGG_CG\n3'-UUU...CCUCG__U___________AAC_______UA_____A__-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
214 -- 220 |
11 -- 17 |
-36.548 kcal/mol |
6.92453 kcal/mol |
15.2664 kcal/mol |
197 230@LB@ | |@LB@5'-GAA...AUGAU U CC C C UCCGC...GCG-3'@LB@ GC AUGCCCGUUGC ACGUUGC UUGCC GU@LB@ || |:||||:|:|| ||||||| |::|| |:@LB@ CG UGCGGGUAGCG UGCAACG AGUGG CG@LB@3'-UUU...CCUCG U AAC UA A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.548 kcal/mol@LB@Unfolding Energy - mRNA 6.92453 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 198 -- 229@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 47 |
0.0004845 |
0.03632 |
b0102 |
zapD |
-14.30 |
0.007459 |
100 -- 148 |
1 -- 47 |
FtsZ stabilizer |
|
_____________99____________________________________________________149\n_____________|_____________________________________________________|\n5'-ACC...UCAUU_______AC_______CCGG___________AUCG________C_________ACGCA...CCA-3'\n______________GAUAAUA___GGCGCA____AUG_CUAUCGC____GAUGUUGC___CGCCUGC\n______________||:||||___:|||||____|:|_|:|||||____||:|||||___|:|||||\n______________CUGUUAU___UCGCGU____UGC_GGUAGCG____CUGCAACG___GUGGACG\n3'-UUU...UCAUU_______ACC_____________G_______AA__________UAA_______-5'\n_____________|____________________________________________________|\n_____________48___________________________________________________1\n |
142 -- 148 |
1 -- 7 |
-50.0565 kcal/mol |
18.9794 kcal/mol |
16.7767 kcal/mol |
99 149@LB@ | |@LB@5'-ACC...UCAUU AC CCGG AUCG C ACGCA...CCA-3'@LB@ GAUAAUA GGCGCA AUG CUAUCGC GAUGUUGC CGCCUGC@LB@ ||:|||| :||||| |:| |:||||| ||:||||| |:|||||@LB@ CUGUUAU UCGCGU UGC GGUAGCG CUGCAACG GUGGACG@LB@3'-UUU...UCAUU ACC G AA UAA -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -50.0565 kcal/mol@LB@Unfolding Energy - mRNA 18.9794 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 100 -- 148@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 11 |
1.858e-05 |
0.005627 |
b4015 |
aceA |
-14.28 |
0.007567 |
72 -- 114 |
4 -- 39 |
isocitrate lyase |
|
_____________71___________________________________________115\n_____________|____________________________________________|\n5'-UUG...UCCCA_______UUUGAC______G____________GAA__GA_____ACUUC...UGA-3'\n______________GGGGCGU______GAUGCC_CA_CGCUUGAUG___CA__UCACC\n______________||:|||:______:|:|||_||_|||||||:|___||__|||||\n______________CCUCGCG______UUGCGG_GU_GCGAACUGC___GU__AGUGG\n3'-UUU...UUAUA______________________A_________AAC__A______ACG-5'\n_____________|____________________________________________|\n_____________40___________________________________________3\n |
96 -- 102 |
15 -- 21 |
-43.7402 kcal/mol |
14.1704 kcal/mol |
15.29 kcal/mol |
71 115@LB@ | |@LB@5'-UUG...UCCCA UUUGAC G GAA GA ACUUC...UGA-3'@LB@ GGGGCGU GAUGCC CA CGCUUGAUG CA UCACC@LB@ ||:|||: :|:||| || |||||||:| || |||||@LB@ CCUCGCG UUGCGG GU GCGAACUGC GU AGUGG@LB@3'-UUU...UUAUA A AAC A ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -43.7402 kcal/mol@LB@Unfolding Energy - mRNA 14.1704 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 72 -- 114@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 92 |
0.002723 |
0.1042 |
b1413 |
hrpA |
-14.20 |
0.008055 |
24 -- 69 |
1 -- 41 |
putative ATP-dependent helicase |
|
_____________23_______________________________________________70\n_____________|________________________________________________|\n5'-GGU...UUUGA________AU____________UGU____ACUU______CAAU_____CACAG...GCG-3'\n______________AUGG_GCG__GC_CCCGUUGCU___UGAC____UAUUCA____CCUGC\n______________||||_|||__:|_|||:|:|||___||||____:|||||____|||||\n______________UACC_CGC__UG_GGGUAGCGA___ACUG____GUAAGU____GGACG\n3'-UUU...UGUUA____U___GU__C________________CAAC_______________-5'\n_____________|_______________________________________________|\n_____________42______________________________________________1\n |
37 -- 43 |
20 -- 26 |
-41.3168 kcal/mol |
11.8333 kcal/mol |
15.2922 kcal/mol |
23 70@LB@ | |@LB@5'-GGU...UUUGA AU UGU ACUU CAAU CACAG...GCG-3'@LB@ AUGG GCG GC CCCGUUGCU UGAC UAUUCA CCUGC@LB@ |||| ||| :| |||:|:||| |||| :||||| |||||@LB@ UACC CGC UG GGGUAGCGA ACUG GUAAGU GGACG@LB@3'-UUU...UGUUA U GU C CAAC -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -41.3168 kcal/mol@LB@Unfolding Energy - mRNA 11.8333 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 24 -- 69@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 55 |
0.0007336 |
0.04699 |
b0585 |
fes |
-14.13 |
0.008457 |
197 -- 228 |
46 -- 77 |
enterobactin/ferrienterobactin esterase |
|
_____________196________________________________229\n_____________|__________________________________|\n5'-CAU...GGUUA__G____A___CG_________U___________GCUGG...GGU-3'\n______________UG_UGUG_CGG____UUAAAAG_AGGAAGUGAGA\n______________||_|:||_|:|____|:||||:_|||||||:|||\n______________AC_AUAC_GUC____AGUUUUU_UCCUUCAUUCU\n3'-UUU...UUAAC__G________AUUA___________________GUUAU...ACG-5'\n_____________|__________________________________|\n_____________78_________________________________45\n |
222 -- 228 |
46 -- 52 |
-26.4508 kcal/mol |
7.03406 kcal/mol |
5.29333 kcal/mol |
196 229@LB@ | |@LB@5'-CAU...GGUUA G A CG U GCUGG...GGU-3'@LB@ UG UGUG CGG UUAAAAG AGGAAGUGAGA@LB@ || |:|| |:| |:||||: |||||||:|||@LB@ AC AUAC GUC AGUUUUU UCCUUCAUUCU@LB@3'-UUU...UUAAC G AUUA GUUAU...ACG-5'@LB@ | |@LB@ 78 45@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -26.4508 kcal/mol@LB@Unfolding Energy - mRNA 7.03406 kcal/mol@LB@Unfolding Energy - sRNA 5.29333 kcal/mol@LB@@LB@Position - mRNA 197 -- 228@LB@Position - sRNA 46 -- 77@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 46 |
0.0004731 |
0.03623 |
b2279 |
nuoK |
-14.07 |
0.008802 |
136 -- 157 |
69 -- 92 |
NADH:ubiquinone oxidoreductase membrane subunit K |
|
_____________135______________________158\n_____________|________________________|\n5'-GGU...AAGAG_________G__________A___AUCGU...UUG-3'\n______________CGUGCGGGU_AA__GUGCUG_GCA\n______________|||:||::|_||__|||||:_|||\n______________GCAUGCUUA_UU__CACGAU_CGU\n3'-UUU...CCGCA_________G__AA______A___CAUUA...ACG-5'\n_____________|________________________|\n_____________93_______________________68\n |
138 -- 144 |
84 -- 90 |
-25.4547 kcal/mol |
6.72556 kcal/mol |
4.66371 kcal/mol |
135 158@LB@ | |@LB@5'-GGU...AAGAG G A AUCGU...UUG-3'@LB@ CGUGCGGGU AA GUGCUG GCA@LB@ |||:||::| || |||||: |||@LB@ GCAUGCUUA UU CACGAU CGU@LB@3'-UUU...CCGCA G AA A CAUUA...ACG-5'@LB@ | |@LB@ 93 68@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -25.4547 kcal/mol@LB@Unfolding Energy - mRNA 6.72556 kcal/mol@LB@Unfolding Energy - sRNA 4.66371 kcal/mol@LB@@LB@Position - mRNA 136 -- 157@LB@Position - sRNA 69 -- 92@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 59 |
0.0009764 |
0.05816 |
b0593 |
entC |
-14.06 |
0.008887 |
219 -- 262 |
19 -- 57 |
isochorismate synthase 1 |
|
_____________218____________________________________________263\n_____________|______________________________________________|\n5'-GGC...UGGCU_________CAGC____C______CAACACUU______A_______UUUCU...CAG-3'\n______________GAGGAAGUA____AGAC___AUGG________GCGCCC_AUCGCUU\n______________:||||||||____||||___||||________:|||||_|||||||\n______________UUCCUUCAU____UCUG___UACC________UGCGGG_UAGCGAA\n3'-UUU...GUUUU_________________UUA____UCGCGU________________CUGCA...ACG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________18\n |
256 -- 262 |
19 -- 25 |
-38.3486 kcal/mol |
10.4998 kcal/mol |
13.7965 kcal/mol |
218 263@LB@ | |@LB@5'-GGC...UGGCU CAGC C CAACACUU A UUUCU...CAG-3'@LB@ GAGGAAGUA AGAC AUGG GCGCCC AUCGCUU@LB@ :|||||||| |||| |||| :||||| |||||||@LB@ UUCCUUCAU UCUG UACC UGCGGG UAGCGAA@LB@3'-UUU...GUUUU UUA UCGCGU CUGCA...ACG-5'@LB@ | |@LB@ 58 18@LB@@LB@@LB@Energy -14.06 kcal/mol@LB@Hybridization Energy -38.3486 kcal/mol@LB@Unfolding Energy - mRNA 10.4998 kcal/mol@LB@Unfolding Energy - sRNA 13.7965 kcal/mol@LB@@LB@Position - mRNA 219 -- 262@LB@Position - sRNA 19 -- 57@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 19 -- 25@LB@ |
