| 155 |
0.006038 |
0.137 |
b4374 |
yjjG |
-10.88 |
0.067155 |
203 -- 266 |
1 -- 54 |
dUMP phosphatase |
|
_____________202_____________________________________________________________________267\n_____________|_______________________________________________________________________|\n5'-CUG...AUAAU__________________UUUUCUUU______G__GAAA____GUUUACCUU____U___________G__CUGCA...CCU-3'\n______________GAAGUGGGAC____UGGA________GAUGCC_AU____CGCU_________UGAC____CAUUCACC_GC\n______________|||||::|||____||||________:|:|||_||____||||_________||||____||||||||_||\n______________CUUCAUUCUG____ACCU________UUGCGG_UA____GCGA_________ACUG____GUAAGUGG_CG\n3'-UUU...UUUUC__________UUAU____CGCG__________G_______________________CAAC________A__-5'\n_____________|______________________________________________________________________|\n_____________55_____________________________________________________________________1\n |
257 -- 263 |
4 -- 10 |
-41.6423 kcal/mol |
13.9643 kcal/mol |
16.8 kcal/mol |
202 267@LB@ | |@LB@5'-CUG...AUAAU UUUUCUUU G GAAA GUUUACCUU U G CUGCA...CCU-3'@LB@ GAAGUGGGAC UGGA GAUGCC AU CGCU UGAC CAUUCACC GC@LB@ |||||::||| |||| :|:||| || |||| |||| |||||||| ||@LB@ CUUCAUUCUG ACCU UUGCGG UA GCGA ACUG GUAAGUGG CG@LB@3'-UUU...UUUUC UUAU CGCG G CAAC A -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -41.6423 kcal/mol@LB@Unfolding Energy - mRNA 13.9643 kcal/mol@LB@Unfolding Energy - sRNA 16.8 kcal/mol@LB@@LB@Position - mRNA 203 -- 266@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 32 |
0.0001844 |
0.0203 |
b0006 |
yaaA |
-10.88 |
0.067423 |
215 -- 223 |
1 -- 9 |
peroxide resistance protein lowers intracellular iron |
|
_____________214_______224\n_____________|_________|\n5'-UUC...CUUAU_________GAAAA...AGU-3'\n______________UUCACCUGC\n______________|||||||||\n______________AAGUGGACG\n3'-UUU...AACGU_________-5'\n_____________|________|\n_____________10_______1\n |
217 -- 223 |
1 -- 7 |
-15.2887 kcal/mol |
2.04449 kcal/mol |
2.37317 kcal/mol |
214 224@LB@ | |@LB@5'-UUC...CUUAU GAAAA...AGU-3'@LB@ UUCACCUGC@LB@ |||||||||@LB@ AAGUGGACG@LB@3'-UUU...AACGU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -15.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.04449 kcal/mol@LB@Unfolding Energy - sRNA 2.37317 kcal/mol@LB@@LB@Position - mRNA 215 -- 223@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 135 |
0.00505 |
0.1318 |
b0918 |
kdsB |
-10.75 |
0.072320 |
21 -- 54 |
1 -- 42 |
3-deoxy-manno-octulosonate cytidylyltransferase |
|
_____________20_________________________________________55\n_____________|__________________________________________|\n5'-CCC...GGAAC______U____U______________AAU_____________CCGGU...UUC-3'\n______________UAUGGA___CA_CGUC___UGCUUGA_____CAUU_GCCUGC\n______________||||||___||_||:|___:||||||_____||||_:|||||\n______________AUACCU___GU_GCGG___GCGAACU_____GUAA_UGGACG\n3'-UUU...CUGUU______CGC__U____GUA_______GCAAC____G______-5'\n_____________|_________________________________________|\n_____________43________________________________________1\n |
35 -- 41 |
17 -- 23 |
-30.6746 kcal/mol |
4.6323 kcal/mol |
15.293 kcal/mol |
20 55@LB@ | |@LB@5'-CCC...GGAAC U U AAU CCGGU...UUC-3'@LB@ UAUGGA CA CGUC UGCUUGA CAUU GCCUGC@LB@ |||||| || ||:| :|||||| |||| :|||||@LB@ AUACCU GU GCGG GCGAACU GUAA UGGACG@LB@3'-UUU...CUGUU CGC U GUA GCAAC G -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -30.6746 kcal/mol@LB@Unfolding Energy - mRNA 4.6323 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 21 -- 54@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 150 |
0.005897 |
0.1368 |
b0887 |
cydD |
-10.72 |
0.073556 |
183 -- 190 |
1 -- 8 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182______191\n_____________|________|\n5'-AUU...AUAAC________UAAGC...UGA-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
184 -- 190 |
1 -- 7 |
-15.001 kcal/mol |
1.91816 kcal/mol |
2.36381 kcal/mol |
182 191@LB@ | |@LB@5'-AUU...AUAAC UAAGC...UGA-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.001 kcal/mol@LB@Unfolding Energy - mRNA 1.91816 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 65 |
0.001098 |
0.05953 |
b1479 |
maeA |
-10.62 |
0.077885 |
180 -- 205 |
37 -- 65 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________179___________________________206\n_____________|_____________________________|\n5'-UAG...UGGAU_______________________C_____ACCAA...GCA-3'\n______________AUUCAAAAAAG__AGUGAG_UGA_AUGGA\n______________|||||||||||__|||:||_::|_|||||\n______________UAAGUUUUUUC__UCAUUC_GUU_UACCU\n3'-UUU...GUCAU___________CU______U___A_____CGCGU...ACG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
184 -- 190 |
55 -- 61 |
-21.4117 kcal/mol |
4.89609 kcal/mol |
5.88101 kcal/mol |
179 206@LB@ | |@LB@5'-UAG...UGGAU C ACCAA...GCA-3'@LB@ AUUCAAAAAAG AGUGAG UGA AUGGA@LB@ ||||||||||| |||:|| ::| |||||@LB@ UAAGUUUUUUC UCAUUC GUU UACCU@LB@3'-UUU...GUCAU CU U A CGCGU...ACG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.4117 kcal/mol@LB@Unfolding Energy - mRNA 4.89609 kcal/mol@LB@Unfolding Energy - sRNA 5.88101 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 17 |
4.003e-05 |
0.007917 |
b1066 |
rimJ |
-10.62 |
0.078044 |
194 -- 220 |
65 -- 91 |
ribosomal-protein-S5-alanine N-acetyltransferase |
|
_____________193___________________________221\n_____________|_____________________________|\n5'-AUU...AGUAG____A____GU__________C_______CGUGC...AUU-3'\n______________GUAU_GAAU___UUG_GCUAU_GCAGUAA\n______________|||:_||||___|||_|||||_|||||||\n______________CAUG_CUUA___AAC_CGAUA_CGUCAUU\n3'-UUU...CGCAG_________GUU___A_____________AAGUU...ACG-5'\n_____________|_____________________________|\n_____________92____________________________64\n |
214 -- 220 |
65 -- 71 |
-21.0331 kcal/mol |
5.8812 kcal/mol |
4.53558 kcal/mol |
193 221@LB@ | |@LB@5'-AUU...AGUAG A GU C CGUGC...AUU-3'@LB@ GUAU GAAU UUG GCUAU GCAGUAA@LB@ |||: |||| ||| ||||| |||||||@LB@ CAUG CUUA AAC CGAUA CGUCAUU@LB@3'-UUU...CGCAG GUU A AAGUU...ACG-5'@LB@ | |@LB@ 92 64@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.8812 kcal/mol@LB@Unfolding Energy - sRNA 4.53558 kcal/mol@LB@@LB@Position - mRNA 194 -- 220@LB@Position - sRNA 65 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 43 |
0.0004177 |
0.03347 |
b3652 |
recG |
-10.52 |
0.082371 |
49 -- 71 |
17 -- 38 |
ATP-dependent DNA helicase |
|
_____________48______________________72\n_____________|_______________________|\n5'-CAA...AAGCA____AA_________________AGGCG...UGC-3'\n______________GAGC__CAACGCCUGUUGUUUGA\n______________||||__|||||||::|:|:||||\n______________CUCG__GUUGCGGGUAGCGAACU\n3'-UUU...UAUAC____C__________________GCAAC...ACG-5'\n_____________|_______________________|\n_____________39______________________16\n |
63 -- 69 |
19 -- 25 |
-31.2627 kcal/mol |
8.52631 kcal/mol |
12.2147 kcal/mol |
48 72@LB@ | |@LB@5'-CAA...AAGCA AA AGGCG...UGC-3'@LB@ GAGC CAACGCCUGUUGUUUGA@LB@ |||| |||||||::|:|:||||@LB@ CUCG GUUGCGGGUAGCGAACU@LB@3'-UUU...UAUAC C GCAAC...ACG-5'@LB@ | |@LB@ 39 16@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -31.2627 kcal/mol@LB@Unfolding Energy - mRNA 8.52631 kcal/mol@LB@Unfolding Energy - sRNA 12.2147 kcal/mol@LB@@LB@Position - mRNA 49 -- 71@LB@Position - sRNA 17 -- 38@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 109 |
0.003466 |
0.1114 |
b4485 |
ytfR |
-10.51 |
0.083206 |
29 -- 56 |
35 -- 61 |
putative sugar ABC transporter ATPase |
|
_____________28____________________________57\n_____________|_____________________________|\n5'-CCU...AAGAA___UU__A_________AA__________AUUGA...GCC-3'\n______________GAA__AG_GAAG_AAGA__AAUAUGGGGU\n______________:||__||_||||_||||__|||||||:|:\n______________UUU__UC_CUUC_UUCU__UUAUACCUCG\n3'-UUU...UUAAG___UU_______A____G___________CGUUG...ACG-5'\n_____________|_____________________________|\n_____________62____________________________34\n |
50 -- 56 |
35 -- 41 |
-20.6661 kcal/mol |
5.51365 kcal/mol |
4.61294 kcal/mol |
28 57@LB@ | |@LB@5'-CCU...AAGAA UU A AA AUUGA...GCC-3'@LB@ GAA AG GAAG AAGA AAUAUGGGGU@LB@ :|| || |||| |||| |||||||:|:@LB@ UUU UC CUUC UUCU UUAUACCUCG@LB@3'-UUU...UUAAG UU A G CGUUG...ACG-5'@LB@ | |@LB@ 62 34@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -20.6661 kcal/mol@LB@Unfolding Energy - mRNA 5.51365 kcal/mol@LB@Unfolding Energy - sRNA 4.61294 kcal/mol@LB@@LB@Position - mRNA 29 -- 56@LB@Position - sRNA 35 -- 61@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
