| 71 |
0.001933 |
0.09081 |
b2044 |
wcaL |
-10.40 |
0.140507 |
12 -- 21 |
24 -- 33 |
putative glycosyl transferase |
|
_____________11_________22\n_____________|__________|\n5'-GGG...AUGCA________G_CUACC...AGA-3'\n______________GCAGCUGG_A\n______________:|||||:|_|\n______________UGUCGAUC_U\n3'-UUU...GACCA________G_AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
13 -- 19 |
26 -- 32 |
-13.1871 kcal/mol |
1.35791 kcal/mol |
1.42716 kcal/mol |
11 22@LB@ | |@LB@5'-GGG...AUGCA G CUACC...AGA-3'@LB@ GCAGCUGG A@LB@ :|||||:| |@LB@ UGUCGAUC U@LB@3'-UUU...GACCA G AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -10.40 kcal/mol@LB@Hybridization Energy -13.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.35791 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 72 |
0.001945 |
0.09081 |
b3024 |
ygiW |
-9.51 |
0.204072 |
108 -- 126 |
18 -- 35 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________107_________________127\n_____________|___________________|\n5'-UGA...GCUCU_______ACUAA_______UUUUU...AAA-3'\n______________GUACAGC_____AUUUUAU\n______________|||||||_____|||||||\n______________CAUGUCG_____UAAAAUA\n3'-UUU...AGGAC_______AUCG________CCCAA...UCG-5'\n_____________|___________________|\n_____________36__________________17\n |
120 -- 126 |
18 -- 24 |
-13.5355 kcal/mol |
2.57979 kcal/mol |
1.44471 kcal/mol |
107 127@LB@ | |@LB@5'-UGA...GCUCU ACUAA UUUUU...AAA-3'@LB@ GUACAGC AUUUUAU@LB@ ||||||| |||||||@LB@ CAUGUCG UAAAAUA@LB@3'-UUU...AGGAC AUCG CCCAA...UCG-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.5355 kcal/mol@LB@Unfolding Energy - mRNA 2.57979 kcal/mol@LB@Unfolding Energy - sRNA 1.44471 kcal/mol@LB@@LB@Position - mRNA 108 -- 126@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 73 |
0.002141 |
0.09621 |
b0740 |
tolB |
-11.17 |
0.098836 |
117 -- 150 |
8 -- 46 |
periplasmic protein |
|
_____________116______________________________________151\n_____________|________________________________________|\n5'-UCC...GCCAC______________GUUUUGU___________________AACAU...CCG-3'\n______________GG_GGUU_CUGGUA_______GUAUUUUA___GUU_UGUU\n______________||_||||_||||||_______|:||||||___|||_||||\n______________CC_CCAA_GACCAU_______CGUAAAAU___CAA_ACAA\n3'-UUU...UUCCU__A____G______GUCGAU_________ACC___U____AAAGUCG-5'\n_____________|________________________________________|\n_____________47_______________________________________7\n |
137 -- 143 |
19 -- 25 |
-23.6895 kcal/mol |
7.90884 kcal/mol |
4.60831 kcal/mol |
116 151@LB@ | |@LB@5'-UCC...GCCAC GUUUUGU AACAU...CCG-3'@LB@ GG GGUU CUGGUA GUAUUUUA GUU UGUU@LB@ || |||| |||||| |:|||||| ||| ||||@LB@ CC CCAA GACCAU CGUAAAAU CAA ACAA@LB@3'-UUU...UUCCU A G GUCGAU ACC U AAAGUCG-5'@LB@ | |@LB@ 47 7@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.6895 kcal/mol@LB@Unfolding Energy - mRNA 7.90884 kcal/mol@LB@Unfolding Energy - sRNA 4.60831 kcal/mol@LB@@LB@Position - mRNA 117 -- 150@LB@Position - sRNA 8 -- 46@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 74 |
0.00218 |
0.09621 |
b2722 |
hycD |
-16.42 |
0.003958 |
87 -- 124 |
10 -- 46 |
hydrogenase 3 membrane subunit |
|
_____________86_______________________________________125\n_____________|________________________________________|\n5'-UCA...AAUCC________U_______CG________GUGCGA___GA___CGUUG...ACC-3'\n______________GGUG__UC_CUGGUGC__GGCUGGCA______GGG__GUG\n______________||||__||_|||||:|__:|||:|||______|||__:||\n______________CCAC__AG_GACCAUG__UCGAUCGU______CCC__UAC\n3'-UUU...UUCCU____CA____________________AAAAUA___AA___AAAAA...UCG-5'\n_____________|________________________________________|\n_____________47_______________________________________9\n |
104 -- 110 |
24 -- 30 |
-37.0223 kcal/mol |
15.9993 kcal/mol |
4.60552 kcal/mol |
86 125@LB@ | |@LB@5'-UCA...AAUCC U CG GUGCGA GA CGUUG...ACC-3'@LB@ GGUG UC CUGGUGC GGCUGGCA GGG GUG@LB@ |||| || |||||:| :|||:||| ||| :||@LB@ CCAC AG GACCAUG UCGAUCGU CCC UAC@LB@3'-UUU...UUCCU CA AAAAUA AA AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.0223 kcal/mol@LB@Unfolding Energy - mRNA 15.9993 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 87 -- 124@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 75 |
0.002192 |
0.09621 |
b3950 |
frwB |
-15.16 |
0.010002 |
30 -- 54 |
11 -- 46 |
putative enzyme IIB component of PTS |
b3899 |
_____________29___________________________________55\n_____________|____________________________________|\n5'-GCA...CUGCC_______GAA________A_________________AUCGC...GGG-3'\n______________GGUGGUU________GGC_AGC______UGGGUUAU\n______________|||||||________:||_|||______||||||||\n______________CCACCAA________UCG_UCG______ACCCAAUA\n3'-UUU...UUCCU_______GGACCAUG___A___UAAAAU________CAAAA...UCG-5'\n_____________|____________________________________|\n_____________47___________________________________10\n |
48 -- 54 |
11 -- 17 |
-24.5661 kcal/mol |
4.81447 kcal/mol |
4.59143 kcal/mol |
29 55@LB@ | |@LB@5'-GCA...CUGCC GAA A AUCGC...GGG-3'@LB@ GGUGGUU GGC AGC UGGGUUAU@LB@ ||||||| :|| ||| ||||||||@LB@ CCACCAA UCG UCG ACCCAAUA@LB@3'-UUU...UUCCU GGACCAUG A UAAAAU CAAAA...UCG-5'@LB@ | |@LB@ 47 10@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -24.5661 kcal/mol@LB@Unfolding Energy - mRNA 4.81447 kcal/mol@LB@Unfolding Energy - sRNA 4.59143 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 11 -- 46@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 76 |
0.002251 |
0.09621 |
b0020 |
nhaR |
-13.73 |
0.025158 |
90 -- 112 |
25 -- 46 |
transcriptional activator of nhaA |
|
_____________89______________________113\n_____________|_______________________|\n5'-AUC...UCUUC__C___AA____A__________UACGC...CUC-3'\n______________GG_GGU__UUGG_UACAGCUGGU\n______________||_|||__:|||_|||||||:|:\n______________CC_CCA__GACC_AUGUCGAUCG\n3'-UUU...UUCCU__A___AG_______________UAAAA...UCG-5'\n_____________|_______________________|\n_____________47______________________24\n |
106 -- 112 |
25 -- 31 |
-27.2836 kcal/mol |
8.99906 kcal/mol |
4.55673 kcal/mol |
89 113@LB@ | |@LB@5'-AUC...UCUUC C AA A UACGC...CUC-3'@LB@ GG GGU UUGG UACAGCUGGU@LB@ || ||| :||| |||||||:|:@LB@ CC CCA GACC AUGUCGAUCG@LB@3'-UUU...UUCCU A AG UAAAA...UCG-5'@LB@ | |@LB@ 47 24@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -27.2836 kcal/mol@LB@Unfolding Energy - mRNA 8.99906 kcal/mol@LB@Unfolding Energy - sRNA 4.55673 kcal/mol@LB@@LB@Position - mRNA 90 -- 112@LB@Position - sRNA 25 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 79 |
0.002261 |
0.09621 |
b2556 |
glrK |
-15.72 |
0.006745 |
240 -- 258 |
20 -- 38 |
sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR |
|
_____________239_________________259\n_____________|___________________|\n5'-CUA...GACAA______AU___________UGCUG...CCU-3'\n______________CUGGUA__GCUGGCAUUUU\n______________||||||__|||:|||||||\n______________GACCAU__CGAUCGUAAAA\n3'-UUU...CCAAG______GU___________UACCC...UCG-5'\n_____________|___________________|\n_____________39__________________19\n |
252 -- 258 |
20 -- 26 |
-25.6316 kcal/mol |
5.4283 kcal/mol |
4.48821 kcal/mol |
239 259@LB@ | |@LB@5'-CUA...GACAA AU UGCUG...CCU-3'@LB@ CUGGUA GCUGGCAUUUU@LB@ |||||| |||:|||||||@LB@ GACCAU CGAUCGUAAAA@LB@3'-UUU...CCAAG GU UACCC...UCG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -25.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.4283 kcal/mol@LB@Unfolding Energy - sRNA 4.48821 kcal/mol@LB@@LB@Position - mRNA 240 -- 258@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 80 |
0.002475 |
0.104 |
b2468 |
aegA |
-11.19 |
0.098238 |
223 -- 245 |
11 -- 33 |
putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit |
|
_____________222_____________________246\n_____________|_______________________|\n5'-UCU...GGCCA_____C____AUGUC________CAUGC...UGA-3'\n______________ACAGU_AGCA_____UGGGUUGU\n______________||||:_||||_____||||||:|\n______________UGUCG_UCGU_____ACCCAAUA\n3'-UUU...GACCA_____A____AAAAU________CAAAA...UCG-5'\n_____________|_______________________|\n_____________34______________________10\n |
239 -- 245 |
11 -- 17 |
-21.0997 kcal/mol |
8.44489 kcal/mol |
1.46958 kcal/mol |
222 246@LB@ | |@LB@5'-UCU...GGCCA C AUGUC CAUGC...UGA-3'@LB@ ACAGU AGCA UGGGUUGU@LB@ ||||: |||| ||||||:|@LB@ UGUCG UCGU ACCCAAUA@LB@3'-UUU...GACCA A AAAAU CAAAA...UCG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.0997 kcal/mol@LB@Unfolding Energy - mRNA 8.44489 kcal/mol@LB@Unfolding Energy - sRNA 1.46958 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 11 -- 17@LB@ |
