| 171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 172 |
0.009254 |
0.1803 |
b1676 |
pykF |
-8.82 |
0.265733 |
268 -- 283 |
23 -- 40 |
pyruvate kinase I |
|
_____________267________________284\n_____________|__________________|\n5'-GGA...UAAAA_G________________GAACG...UGA-3'\n______________U_CUGG_AC_GCUGGCAU\n______________|_||||_||_|||:||||\n______________A_GACC_UG_CGAUCGUA\n3'-UUU...CACCA_G____A__U________AAAUA...UCG-5'\n_____________|__________________|\n_____________41_________________22\n |
277 -- 283 |
23 -- 29 |
-20.12 kcal/mol |
6.74388 kcal/mol |
4.55554 kcal/mol |
267 284@LB@ | |@LB@5'-GGA...UAAAA G GAACG...UGA-3'@LB@ U CUGG AC GCUGGCAU@LB@ | |||| || |||:||||@LB@ A GACC UG CGAUCGUA@LB@3'-UUU...CACCA G A U AAAUA...UCG-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -20.12 kcal/mol@LB@Unfolding Energy - mRNA 6.74388 kcal/mol@LB@Unfolding Energy - sRNA 4.55554 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 173 |
0.009278 |
0.1803 |
b3495 |
uspA |
-10.68 |
0.124344 |
253 -- 279 |
16 -- 40 |
universal stress global response regulator |
|
_____________252_________________________280\n_____________|___________________________|\n5'-GUC...CAAAG________G__AA____GUCUC_____CUCGC...AAG-3'\n______________UUCUGGUA_AG__AGCA_____UAUGG\n______________|:||||||_||__||||_____|||||\n______________AGGACCAU_UC__UCGU_____AUACC\n3'-UUU...CACCA________G__GA____AAA_______CAAUA...UCG-5'\n_____________|___________________________|\n_____________41__________________________15\n |
254 -- 260 |
33 -- 39 |
-24.2729 kcal/mol |
9.02768 kcal/mol |
4.56874 kcal/mol |
252 280@LB@ | |@LB@5'-GUC...CAAAG G AA GUCUC CUCGC...AAG-3'@LB@ UUCUGGUA AG AGCA UAUGG@LB@ |:|||||| || |||| |||||@LB@ AGGACCAU UC UCGU AUACC@LB@3'-UUU...CACCA G GA AAA CAAUA...UCG-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -24.2729 kcal/mol@LB@Unfolding Energy - mRNA 9.02768 kcal/mol@LB@Unfolding Energy - sRNA 4.56874 kcal/mol@LB@@LB@Position - mRNA 253 -- 279@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 174 |
0.009477 |
0.1831 |
b3186 |
rplU |
-11.27 |
0.094314 |
2 -- 27 |
9 -- 34 |
50S ribosomal subunit protein L21 |
|
_____________1____________________________28\n_____________|____________________________|\n__________5'-U_________G_A_____A____GAU___ACUGA...UUG-3'\n______________UAUGGUUAG_A___UAU_GGGU___UGU\n______________||::|:|||_|___|||_||||___|||\n______________AUGUCGAUC_U___AUA_CCCA___ACA\n3'-UUU...GGACC_________G_AAA________AU____AAAAGUCG-5'\n_____________|____________________________|\n_____________35___________________________8\n |
4 -- 10 |
26 -- 32 |
-16.432 kcal/mol |
3.67439 kcal/mol |
1.48697 kcal/mol |
1 28@LB@ | |@LB@ 5'-U G A A GAU ACUGA...UUG-3'@LB@ UAUGGUUAG A UAU GGGU UGU@LB@ ||::|:||| | ||| |||| |||@LB@ AUGUCGAUC U AUA CCCA ACA@LB@3'-UUU...GGACC G AAA AU AAAAGUCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -16.432 kcal/mol@LB@Unfolding Energy - mRNA 3.67439 kcal/mol@LB@Unfolding Energy - sRNA 1.48697 kcal/mol@LB@@LB@Position - mRNA 2 -- 27@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 175 |
0.009651 |
0.1848 |
b2016 |
yeeZ |
-14.25 |
0.018278 |
222 -- 265 |
1 -- 50 |
putative epimerase |
|
_____________221_______________________________________________________266\n_____________|_________________________________________________________|\n5'-ACC...UUGUC___UUA________A____CA___C______________________CAC_______GCGAG...CAC-3'\n______________GGG___GGGUGGUU___GG__UGC_GCUGGCG___________AUGU___UUUCAGC\n______________:||___:|||||||___||__|:|_|||:||:___________||||___|||||||\n______________UCC___UCCACCAA___CC__AUG_CGAUCGU___________UACA___AAAGUCG\n3'-UUU...CCGAU______________GGA_______U_______AAAAUACCCAA____A_________-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
259 -- 265 |
1 -- 7 |
-34.6896 kcal/mol |
15.7797 kcal/mol |
4.6634 kcal/mol |
221 266@LB@ | |@LB@5'-ACC...UUGUC UUA A CA C CAC GCGAG...CAC-3'@LB@ GGG GGGUGGUU GG UGC GCUGGCG AUGU UUUCAGC@LB@ :|| :||||||| || |:| |||:||: |||| |||||||@LB@ UCC UCCACCAA CC AUG CGAUCGU UACA AAAGUCG@LB@3'-UUU...CCGAU GGA U AAAAUACCCAA A -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -34.6896 kcal/mol@LB@Unfolding Energy - mRNA 15.7797 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 176 |
0.009679 |
0.1848 |
b4348 |
hsdS |
-12.85 |
0.041875 |
168 -- 192 |
15 -- 42 |
specificity determinant for hsdM and hsdR |
|
_____________167__________________________193\n_____________|____________________________|\n5'-CUG...CGUCA___G____A____A________G_____GUGAA...UAA-3'\n______________GUU_CUGG___AG__AGCGUUU_GUGGG\n______________|||_||||___||__|||:|||_:||||\n______________CAA_GACC___UC__UCGUAAA_UACCC\n3'-UUU...UCCAC___G____AUG__GA_______A_____AAUAC...UCG-5'\n_____________|____________________________|\n_____________43___________________________14\n |
180 -- 186 |
21 -- 27 |
-24.8178 kcal/mol |
7.40251 kcal/mol |
4.57031 kcal/mol |
167 193@LB@ | |@LB@5'-CUG...CGUCA G A A G GUGAA...UAA-3'@LB@ GUU CUGG AG AGCGUUU GUGGG@LB@ ||| |||| || |||:||| :||||@LB@ CAA GACC UC UCGUAAA UACCC@LB@3'-UUU...UCCAC G AUG GA A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -24.8178 kcal/mol@LB@Unfolding Energy - mRNA 7.40251 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 177 |
0.009845 |
0.1869 |
b3241 |
aaeA |
-6.34 |
0.565531 |
229 -- 235 |
29 -- 35 |
p-hydroxybenzoic acid efflux system component |
|
_____________228_____236\n_____________|_______|\n5'-UCC...CUCCC_______CAUCA...CCG-3'\n______________GUACGGC\n______________||||:||\n______________CAUGUCG\n3'-UUU...AGGAC_______AUCGU...UCG-5'\n_____________|_______|\n_____________36______28\n |
229 -- 235 |
29 -- 35 |
-10.2139 kcal/mol |
2.71034 kcal/mol |
1.16584 kcal/mol |
228 236@LB@ | |@LB@5'-UCC...CUCCC CAUCA...CCG-3'@LB@ GUACGGC@LB@ ||||:||@LB@ CAUGUCG@LB@3'-UUU...AGGAC AUCGU...UCG-5'@LB@ | |@LB@ 36 28@LB@@LB@@LB@Energy -6.34 kcal/mol@LB@Hybridization Energy -10.2139 kcal/mol@LB@Unfolding Energy - mRNA 2.71034 kcal/mol@LB@Unfolding Energy - sRNA 1.16584 kcal/mol@LB@@LB@Position - mRNA 229 -- 235@LB@Position - sRNA 29 -- 35@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 178 |
0.009929 |
0.1875 |
b1278 |
pgpB |
-11.49 |
0.084643 |
145 -- 171 |
10 -- 41 |
phosphatidylglycerophosphatase B |
|
_____________144______________________________172\n_____________|________________________________|\n5'-GUU...AAUUU_______AA_____________CA________AUUGU...AAC-3'\n______________UUCCUGG_____CUGGCGUUUU____GUUAUG\n______________|||||||_____||:||:||||____||||||\n______________AAGGACC_____GAUCGUAAAA____CAAUAC\n3'-UUU...CCACC_______AUGUC__________UACC______AAAAA...UCG-5'\n_____________|________________________________|\n_____________42_______________________________9\n |
157 -- 163 |
20 -- 26 |
-25.137 kcal/mol |
9.03979 kcal/mol |
4.60294 kcal/mol |
144 172@LB@ | |@LB@5'-GUU...AAUUU AA CA AUUGU...AAC-3'@LB@ UUCCUGG CUGGCGUUUU GUUAUG@LB@ ||||||| ||:||:|||| ||||||@LB@ AAGGACC GAUCGUAAAA CAAUAC@LB@3'-UUU...CCACC AUGUC UACC AAAAA...UCG-5'@LB@ | |@LB@ 42 9@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -25.137 kcal/mol@LB@Unfolding Energy - mRNA 9.03979 kcal/mol@LB@Unfolding Energy - sRNA 4.60294 kcal/mol@LB@@LB@Position - mRNA 145 -- 171@LB@Position - sRNA 10 -- 41@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 179 |
0.01003 |
0.1882 |
b0619 |
citA |
-9.15 |
0.235039 |
224 -- 237 |
20 -- 33 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________223____________238\n_____________|______________|\n5'-CAU...AAUAA______U_______UCCAA...UCA-3'\n______________ACAGUU_GCAUUUU\n______________||||:|_|||||||\n______________UGUCGA_CGUAAAA\n3'-UUU...GACCA______U_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
231 -- 237 |
20 -- 26 |
-13.7934 kcal/mol |
3.21006 kcal/mol |
1.43447 kcal/mol |
223 238@LB@ | |@LB@5'-CAU...AAUAA U UCCAA...UCA-3'@LB@ ACAGUU GCAUUUU@LB@ ||||:| |||||||@LB@ UGUCGA CGUAAAA@LB@3'-UUU...GACCA U UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -13.7934 kcal/mol@LB@Unfolding Energy - mRNA 3.21006 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 224 -- 237@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 180 |
0.01039 |
0.1919 |
b1778 |
msrB |
-9.69 |
0.189810 |
88 -- 95 |
29 -- 36 |
methionine sulfoxide reductase B |
|
_____________87_______96\n_____________|________|\n5'-CUU...AUUUA________CAUUU...GUC-3'\n______________GGUGCAGC\n______________|||:||||\n______________CCAUGUCG\n3'-UUU...AAGGA________AUCGU...UCG-5'\n_____________|________|\n_____________37_______28\n |
89 -- 95 |
29 -- 35 |
-13.558 kcal/mol |
2.69806 kcal/mol |
1.16901 kcal/mol |
87 96@LB@ | |@LB@5'-CUU...AUUUA CAUUU...GUC-3'@LB@ GGUGCAGC@LB@ |||:||||@LB@ CCAUGUCG@LB@3'-UUU...AAGGA AUCGU...UCG-5'@LB@ | |@LB@ 37 28@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -13.558 kcal/mol@LB@Unfolding Energy - mRNA 2.69806 kcal/mol@LB@Unfolding Energy - sRNA 1.16901 kcal/mol@LB@@LB@Position - mRNA 88 -- 95@LB@Position - sRNA 29 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 29 -- 35@LB@ |
