132 |
0.0212 |
0.526 |
b2455 |
eutE |
-9.17 |
0.140915 |
224 -- 235 |
1 -- 12 |
aldehyde oxidoreductase ethanolamine utilization protein |
|
_____________223__________236\n_____________|____________|\n5'-GGU...GAACA________A___GGUAC...UCG-3'\n______________GGUGGUGA_AGC\n______________::||:|||_|||\n______________UUACUACU_UCG\n3'-UUU...UUCAA________A___-5'\n_____________|___________|\n_____________13__________1\n |
225 -- 231 |
5 -- 11 |
-12.5804 kcal/mol |
3.3751 kcal/mol |
0.0394463 kcal/mol |
223 236@LB@ | |@LB@5'-GGU...GAACA A GGUAC...UCG-3'@LB@ GGUGGUGA AGC@LB@ ::||:||| |||@LB@ UUACUACU UCG@LB@3'-UUU...UUCAA A -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -12.5804 kcal/mol@LB@Unfolding Energy - mRNA 3.3751 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 224 -- 235@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
134 |
0.02184 |
0.526 |
b0034 |
caiF |
-11.03 |
0.059446 |
251 -- 259 |
1 -- 9 |
cai operon transcriptional activator |
|
_____________250_______260\n_____________|_________|\n5'-UGA...GAAUG_________UGAAA...AUU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
253 -- 259 |
1 -- 7 |
-13.9707 kcal/mol |
2.91573 kcal/mol |
0.0200155 kcal/mol |
250 260@LB@ | |@LB@5'-UGA...GAAUG UGAAA...AUU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.9707 kcal/mol@LB@Unfolding Energy - mRNA 2.91573 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 251 -- 259@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 1 -- 7@LB@ |
135 |
0.02191 |
0.526 |
b1342 |
ydaN |
-17.19 |
0.001818 |
129 -- 197 |
1 -- 58 |
putative Zn(II) transporter |
|
_____________128______________________________________________________________________198\n_____________|________________________________________________________________________|\n5'-CGU...GUAAU_______UG_______GCGUAACAGGGC______GCUA____UACA________UGC___________A___ACUGU...AUG-3'\n______________GGGGUGA__AGAUGUU____________CAGAAG_____GAC______AAAUAA___GUUGAUGAUGG_GGC\n______________|||||:|__|||::||____________|||||:_____|||______||||||___|||:||||||:_:||\n______________CCCCAUU__UCUGUAA____________GUCUUU_____CUG______UUUAUU___CAAUUACUACU_UCG\n3'-UUU...UUUAU_______UG_________________________ACUUA___CCAUUA______U_____________A___-5'\n_____________|_______________________________________________________________________|\n_____________59______________________________________________________________________1\n |
187 -- 193 |
5 -- 11 |
-40.4273 kcal/mol |
16.9018 kcal/mol |
6.33758 kcal/mol |
128 198@LB@ | |@LB@5'-CGU...GUAAU UG GCGUAACAGGGC GCUA UACA UGC A ACUGU...AUG-3'@LB@ GGGGUGA AGAUGUU CAGAAG GAC AAAUAA GUUGAUGAUGG GGC@LB@ |||||:| |||::|| |||||: ||| |||||| |||:||||||: :||@LB@ CCCCAUU UCUGUAA GUCUUU CUG UUUAUU CAAUUACUACU UCG@LB@3'-UUU...UUUAU UG ACUUA CCAUUA U A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -17.19 kcal/mol@LB@Hybridization Energy -40.4273 kcal/mol@LB@Unfolding Energy - mRNA 16.9018 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 129 -- 197@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 5 -- 11@LB@ |
136 |
0.02238 |
0.526 |
b1883 |
cheB |
-10.46 |
0.078180 |
185 -- 206 |
1 -- 23 |
fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA |
|
_____________184______________________207\n_____________|________________________|\n5'-GGG...UGCGC_________A____C_________AAAAU...CGA-3'\n______________UAAGUAAGG_UUAA_GAUGA__GC\n______________|||:|||:|_||||_|||||__||\n______________AUUUAUUUC_AAUU_CUACU__CG\n3'-UUU...CCAUU______________A_____AU__-5'\n_____________|_______________________|\n_____________24______________________1\n |
187 -- 193 |
15 -- 21 |
-15.1436 kcal/mol |
4.57462 kcal/mol |
0.105066 kcal/mol |
184 207@LB@ | |@LB@5'-GGG...UGCGC A C AAAAU...CGA-3'@LB@ UAAGUAAGG UUAA GAUGA GC@LB@ |||:|||:| |||| ||||| ||@LB@ AUUUAUUUC AAUU CUACU CG@LB@3'-UUU...CCAUU A AU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -15.1436 kcal/mol@LB@Unfolding Energy - mRNA 4.57462 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 185 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 15 -- 21@LB@ |
140 |
0.02319 |
0.526 |
b3615 |
waaH |
-10.58 |
0.073933 |
178 -- 212 |
1 -- 47 |
LPS(HepIII)-glucuronic acid glycosyltransferase |
|
_____________177______________________________________________213\n_____________|________________________________________________|\n5'-GAU...GGAUA____________C____U_______UU________________AC___ACCAA...GGA-3'\n______________AC_UUCAGAGGU____G_CGGUAAU___________AUGAUGA__AGC\n______________||_||||||::|____|_|||||||___________|||||||__|||\n______________UG_AAGUCUUUA____C_GCCAUUA___________UACUACU__UCG\n3'-UUU...UUGUC__U_________CUUA_U_______UUUAUUUCAAU_______A____-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
201 -- 207 |
5 -- 11 |
-24.9941 kcal/mol |
8.09222 kcal/mol |
6.32011 kcal/mol |
177 213@LB@ | |@LB@5'-GAU...GGAUA C U UU AC ACCAA...GGA-3'@LB@ AC UUCAGAGGU G CGGUAAU AUGAUGA AGC@LB@ || ||||||::| | ||||||| ||||||| |||@LB@ UG AAGUCUUUA C GCCAUUA UACUACU UCG@LB@3'-UUU...UUGUC U CUUA U UUUAUUUCAAU A -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -24.9941 kcal/mol@LB@Unfolding Energy - mRNA 8.09222 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 178 -- 212@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 5 -- 11@LB@ |
141 |
0.0236 |
0.526 |
b3339 |
tufA |
-10.69 |
0.070202 |
69 -- 84 |
1 -- 19 |
translation elongation factor EF-Tu 1 |
b3980 |
_____________68__________________85\n_____________|___________________|\n5'-AAU...AUUCC___________________GCCGA...CCA-3'\n______________UGAAGU__AUGAUGA_AGC\n______________|:||||__|||||||_|||\n______________AUUUCA__UACUACU_UCG\n3'-UUU...UAUUU______AU_______A___-5'\n_____________|__________________|\n_____________20_________________1\n |
75 -- 81 |
5 -- 11 |
-13.5879 kcal/mol |
2.83361 kcal/mol |
0.0638423 kcal/mol |
68 85@LB@ | |@LB@5'-AAU...AUUCC GCCGA...CCA-3'@LB@ UGAAGU AUGAUGA AGC@LB@ |:|||| ||||||| |||@LB@ AUUUCA UACUACU UCG@LB@3'-UUU...UAUUU AU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -13.5879 kcal/mol@LB@Unfolding Energy - mRNA 2.83361 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 5 -- 11@LB@ |
142 |
0.02395 |
0.526 |
b0192 |
nlpE |
-14.44 |
0.009771 |
167 -- 226 |
1 -- 55 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-UCA...GCAAA___C_______G________AAAAAGAAG____G________AA_______C____A____C___GAUGG...CGC-3'\n______________GUG_GCAG_CG_UCGGGAAU_________GAAU_GAUGGUGA_____AAAG__GAU_GUGA_AGC\n______________||:_:|||_|:_||:|:|||_________||||_||:|||:|_____||||__:||_:|||_|||\n______________CAU_UGUC_GU_AGUCUUUA_________CUUA_CUGCCAUU_____UUUC__UUA_UACU_UCG\n3'-UUU...AUCCC___U____U__A______________________________AUUUA____AA___C____A___-5'\n_____________|________________________________________________________________|\n_____________56_______________________________________________________________1\n |
201 -- 207 |
24 -- 30 |
-31.0616 kcal/mol |
10.2836 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-UCA...GCAAA C G AAAAAGAAG G AA C A C GAUGG...CGC-3'@LB@ GUG GCAG CG UCGGGAAU GAAU GAUGGUGA AAAG GAU GUGA AGC@LB@ ||: :||| |: ||:|:||| |||| ||:|||:| |||| :|| :||| |||@LB@ CAU UGUC GU AGUCUUUA CUUA CUGCCAUU UUUC UUA UACU UCG@LB@3'-UUU...AUCCC U U A AUUUA AA C A -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -31.0616 kcal/mol@LB@Unfolding Energy - mRNA 10.2836 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
143 |
0.02405 |
0.526 |
b3292 |
zntR |
-11.17 |
0.055543 |
275 -- 285 |
1 -- 12 |
zntA gene transcriptional activator |
|
_____________274__________286\n_____________|____________|\n5'-UGA...CAGCA____________AUGAA...CUG-3'\n______________GAUGAUGG_AGC\n______________:||||||:_|||\n______________UUACUACU_UCG\n3'-UUU...UUCAA________A___-5'\n_____________|___________|\n_____________13__________1\n |
276 -- 282 |
5 -- 11 |
-12.3439 kcal/mol |
1.13072 kcal/mol |
0.0394463 kcal/mol |
274 286@LB@ | |@LB@5'-UGA...CAGCA AUGAA...CUG-3'@LB@ GAUGAUGG AGC@LB@ :||||||: |||@LB@ UUACUACU UCG@LB@3'-UUU...UUCAA A -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -12.3439 kcal/mol@LB@Unfolding Energy - mRNA 1.13072 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 5 -- 11@LB@ |
147 |
0.02463 |
0.526 |
b2830 |
rppH |
-8.72 |
0.170707 |
205 -- 218 |
1 -- 14 |
RNA pyrophosphohydrolase |
|
_____________204____________219\n_____________|______________|\n5'-UUC...GGUGA_______C______UACCG...GGC-3'\n______________UUGAUGA_GAUGGC\n______________||:||||_|||:||\n______________AAUUACU_CUAUCG\n3'-UUU...AUUUC_______A______-5'\n_____________|_____________|\n_____________15____________1\n |
205 -- 211 |
8 -- 14 |
-13.7427 kcal/mol |
4.97796 kcal/mol |
0.0473494 kcal/mol |
204 219@LB@ | |@LB@5'-UUC...GGUGA C UACCG...GGC-3'@LB@ UUGAUGA GAUGGC@LB@ ||:|||| |||:||@LB@ AAUUACU CUAUCG@LB@3'-UUU...AUUUC A -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -13.7427 kcal/mol@LB@Unfolding Energy - mRNA 4.97796 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 205 -- 218@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 8 -- 14@LB@ |
149 |
0.02481 |
0.526 |
b2108 |
yehA |
-13.80 |
0.014025 |
228 -- 241 |
1 -- 14 |
putative fimbrial-like adhesin protein |
|
_____________227____________242\n_____________|______________|\n5'-GUU...UUAUA______________UAUGC...UUG-3'\n______________UUAAUGAUGAUGGU\n______________|||||||||||:|:\n______________AAUUACUACUAUCG\n3'-UUU...AUUUC______________-5'\n_____________|_____________|\n_____________15____________1\n |
235 -- 241 |
1 -- 7 |
-16.5389 kcal/mol |
2.69058 kcal/mol |
0.0473494 kcal/mol |
227 242@LB@ | |@LB@5'-GUU...UUAUA UAUGC...UUG-3'@LB@ UUAAUGAUGAUGGU@LB@ |||||||||||:|:@LB@ AAUUACUACUAUCG@LB@3'-UUU...AUUUC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -16.5389 kcal/mol@LB@Unfolding Energy - mRNA 2.69058 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 228 -- 241@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |