27 |
0.001735 |
0.211 |
b3052 |
hldE |
-15.91 |
0.004078 |
227 -- 261 |
1 -- 47 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________226______________________________________________262\n_____________|________________________________________________|\n5'-GCG...UUUGA____G_____________________________________UGAU__UGGAU...CGC-3'\n______________ACGU_CAG____GAGUGAUGGU_________GGUUGGUGAUG____GC\n______________||:|_|||____||:|||:|||_________:|||::|||||____||\n______________UGUA_GUC____CUUACUGCCA_________UCAAUUACUAC____CG\n3'-UUU...UUGUC____A___UUUA__________UUAUUUAUU___________UAU___-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
249 -- 255 |
6 -- 12 |
-30.7414 kcal/mol |
8.50852 kcal/mol |
6.32011 kcal/mol |
226 262@LB@ | |@LB@5'-GCG...UUUGA G UGAU UGGAU...CGC-3'@LB@ ACGU CAG GAGUGAUGGU GGUUGGUGAUG GC@LB@ ||:| ||| ||:|||:||| :|||::||||| ||@LB@ UGUA GUC CUUACUGCCA UCAAUUACUAC CG@LB@3'-UUU...UUGUC A UUUA UUAUUUAUU UAU -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -30.7414 kcal/mol@LB@Unfolding Energy - mRNA 8.50852 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 227 -- 261@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
38 |
0.003831 |
0.3287 |
b3739 |
atpI |
-13.67 |
0.015109 |
253 -- 271 |
1 -- 16 |
ATP synthase membrane-bound accessory factor |
|
_____________252_________________272\n_____________|___________________|\n5'-GAA...CGUUC_____CUG___________AAGUG...ACC-3'\n______________AGUUA___GUGGUGAUAGC\n______________|||||___:||:|||||||\n______________UCAAU___UACUACUAUCG\n3'-UUU...UUAUU___________________-5'\n_____________|__________________|\n_____________17_________________1\n |
265 -- 271 |
1 -- 7 |
-18.239 kcal/mol |
4.52285 kcal/mol |
0.0492804 kcal/mol |
252 272@LB@ | |@LB@5'-GAA...CGUUC CUG AAGUG...ACC-3'@LB@ AGUUA GUGGUGAUAGC@LB@ ||||| :||:|||||||@LB@ UCAAU UACUACUAUCG@LB@3'-UUU...UUAUU -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -13.67 kcal/mol@LB@Hybridization Energy -18.239 kcal/mol@LB@Unfolding Energy - mRNA 4.52285 kcal/mol@LB@Unfolding Energy - sRNA 0.0492804 kcal/mol@LB@@LB@Position - mRNA 253 -- 271@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 1 -- 7@LB@ |
40 |
0.004127 |
0.3349 |
b1659 |
ydhB |
-12.78 |
0.024485 |
130 -- 177 |
1 -- 61 |
LysR family putative transcriptional regulator |
|
_____________129_______________________________________________________________178\n_____________|_________________________________________________________________|\n5'-CGA...AAAGU______A_____AU_____________________________UU_______________C____UUCAA...UCA-3'\n______________GUAGGG_GUGAA__UAG_UGUU_____GUGAA__ACGGUAAUA___________UGAUGA_UGGU\n______________:|||||_||:||__:||_::||_____:||||__|||||||||___________||||||_|:|:\n______________UAUCCC_CAUUU__GUC_GUAA_____UACUU__UGCCAUUAU___________ACUACU_AUCG\n3'-UUU...AACUU_________________U____GUCUU_____AC_________UUAUUUCAAUU___________-5'\n_____________|________________________________________________________________|\n_____________62_______________________________________________________________1\n |
158 -- 164 |
22 -- 28 |
-31.01 kcal/mol |
11.8895 kcal/mol |
6.344 kcal/mol |
129 178@LB@ | |@LB@5'-CGA...AAAGU A AU UU C UUCAA...UCA-3'@LB@ GUAGGG GUGAA UAG UGUU GUGAA ACGGUAAUA UGAUGA UGGU@LB@ :||||| ||:|| :|| ::|| :|||| ||||||||| |||||| |:|:@LB@ UAUCCC CAUUU GUC GUAA UACUU UGCCAUUAU ACUACU AUCG@LB@3'-UUU...AACUU U GUCUU AC UUAUUUCAAUU -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -31.01 kcal/mol@LB@Unfolding Energy - mRNA 11.8895 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 130 -- 177@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 22 -- 28@LB@ |
44 |
0.004782 |
0.3568 |
b3243 |
aaeR |
-11.65 |
0.043804 |
4 -- 44 |
1 -- 57 |
transcriptional regulator for aaeXAB operon |
|
_____________3_________________________________________________________45\n_____________|_________________________________________________________|\n________5'-AAC_________________UGU____CCU_____U_____G__________________AGGCG...UCA-3'\n______________GGG_AAACAGAC__UCA____UGA____UGGU_GUAAA_AGAG___________AGC\n______________|||_||||||||__|||____|||____:|||_:||||_|:||___________|||\n______________CCC_UUUGUCUG__AGU____ACU____GCCA_UAUUU_UUUC___________UCG\n3'-UUU...UUAUC___A________UA___CUUU___UACU____U_____A____AAUUACUACUA___-5'\n_____________|________________________________________________________|\n_____________58_______________________________________________________1\n |
8 -- 14 |
46 -- 52 |
-26.9604 kcal/mol |
8.9713 kcal/mol |
6.33758 kcal/mol |
3 45@LB@ | |@LB@ 5'-AAC UGU CCU U G AGGCG...UCA-3'@LB@ GGG AAACAGAC UCA UGA UGGU GUAAA AGAG AGC@LB@ ||| |||||||| ||| ||| :||| :|||| |:|| |||@LB@ CCC UUUGUCUG AGU ACU GCCA UAUUU UUUC UCG@LB@3'-UUU...UUAUC A UA CUUU UACU U A AAUUACUACUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -26.9604 kcal/mol@LB@Unfolding Energy - mRNA 8.9713 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 46 -- 52@LB@ |
47 |
0.005156 |
0.3601 |
b2614 |
grpE |
-12.03 |
0.036099 |
152 -- 179 |
1 -- 26 |
heat shock protein |
|
_____________151__________________________180\n_____________|____________________________|\n5'-GAG...CCCCA_______C________CGA_____AU__GAAAA...CUG-3'\n______________UAAUAAG_GAAGUUAG___GAUGA__GC\n______________||||||:_:||||||:___|||||__||\n______________AUUAUUU_UUUCAAUU___CUACU__CG\n3'-UUU...CUGCC_______A________A_______AU__-5'\n_____________|___________________________|\n_____________27__________________________1\n |
161 -- 167 |
11 -- 17 |
-17.6467 kcal/mol |
5.03361 kcal/mol |
0.580494 kcal/mol |
151 180@LB@ | |@LB@5'-GAG...CCCCA C CGA AU GAAAA...CUG-3'@LB@ UAAUAAG GAAGUUAG GAUGA GC@LB@ ||||||: :||||||: ||||| ||@LB@ AUUAUUU UUUCAAUU CUACU CG@LB@3'-UUU...CUGCC A A AU -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -17.6467 kcal/mol@LB@Unfolding Energy - mRNA 5.03361 kcal/mol@LB@Unfolding Energy - sRNA 0.580494 kcal/mol@LB@@LB@Position - mRNA 152 -- 179@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 11 -- 17@LB@ |
48 |
0.005342 |
0.3653 |
b3380 |
yhfW |
-15.20 |
0.006283 |
218 -- 233 |
1 -- 15 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________217______________234\n_____________|________________|\n5'-CUC...GUGGU________U_______UUUGG...GUG-3'\n______________GUUAGUGA_UGAUAGC\n______________||||:|||_|||||||\n______________CAAUUACU_ACUAUCG\n3'-UUU...UAUUU________________-5'\n_____________|_______________|\n_____________16______________1\n |
227 -- 233 |
1 -- 7 |
-17.7091 kcal/mol |
2.46465 kcal/mol |
0.0474282 kcal/mol |
217 234@LB@ | |@LB@5'-CUC...GUGGU U UUUGG...GUG-3'@LB@ GUUAGUGA UGAUAGC@LB@ ||||:||| |||||||@LB@ CAAUUACU ACUAUCG@LB@3'-UUU...UAUUU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -17.7091 kcal/mol@LB@Unfolding Energy - mRNA 2.46465 kcal/mol@LB@Unfolding Energy - sRNA 0.0474282 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 1 -- 7@LB@ |
49 |
0.00563 |
0.3739 |
b2239 |
glpQ |
-9.17 |
0.140723 |
61 -- 103 |
1 -- 49 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________60__________________________________________________104\n_____________|___________________________________________________|\n5'-CGG...ACCGU____UUC_____CUG__________CUU______U________________GGCAG...UCA-3'\n______________GGAC___UUCGG____GGAUGGCGG_______UA_GG_UAAUGAU__UGGC\n______________:|||___|||:|____|:|||:|||_______||_:|_|||||||__|:||\n______________UCUG___AAGUC____CUUACUGCC_______AU_UC_AUUACUA__AUCG\n3'-UUU...AUUUG____U_______UUUA_________AUUAUUU__U__A_______CU____-5'\n_____________|__________________________________________________|\n_____________50_________________________________________________1\n |
93 -- 99 |
7 -- 13 |
-28.1898 kcal/mol |
12.697 kcal/mol |
6.32371 kcal/mol |
60 104@LB@ | |@LB@5'-CGG...ACCGU UUC CUG CUU U GGCAG...UCA-3'@LB@ GGAC UUCGG GGAUGGCGG UA GG UAAUGAU UGGC@LB@ :||| |||:| |:|||:||| || :| ||||||| |:||@LB@ UCUG AAGUC CUUACUGCC AU UC AUUACUA AUCG@LB@3'-UUU...AUUUG U UUUA AUUAUUU U A CU -5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -28.1898 kcal/mol@LB@Unfolding Energy - mRNA 12.697 kcal/mol@LB@Unfolding Energy - sRNA 6.32371 kcal/mol@LB@@LB@Position - mRNA 61 -- 103@LB@Position - sRNA 1 -- 49@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 7 -- 13@LB@ |
53 |
0.006355 |
0.3902 |
b2916 |
argP |
-17.11 |
0.001913 |
217 -- 267 |
1 -- 51 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________216____________________________________________________268\n_____________|______________________________________________________|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________||||_|||||_|||:___||:|||_||||:|||_:|:||______|||___|||\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
242 -- 248 |
22 -- 28 |
-33.3201 kcal/mol |
9.87503 kcal/mol |
6.33528 kcal/mol |
216 268@LB@ | |@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ |||| ||||| |||: ||:||| ||||:||| :|:|| ||| |||@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@ |
55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |
56 |
0.007094 |
0.4159 |
b1242 |
ychE |
-10.14 |
0.091024 |
67 -- 90 |
1 -- 23 |
UPF0056 family inner membrane protein |
|
_____________66_______________________91\n_____________|________________________|\n5'-CAU...ACAAC_______CAA___C_A________AAUUU...GCA-3'\n______________UAGAUAA___UAA_G_AUGAUAGC\n______________||:||||___|||_|_||||||||\n______________AUUUAUU___AUU_C_UACUAUCG\n3'-UUU...CCAUU_______UCA___A__________-5'\n_____________|_______________________|\n_____________24______________________1\n |
84 -- 90 |
1 -- 7 |
-13.9916 kcal/mol |
3.74778 kcal/mol |
0.105066 kcal/mol |
66 91@LB@ | |@LB@5'-CAU...ACAAC CAA C A AAUUU...GCA-3'@LB@ UAGAUAA UAA G AUGAUAGC@LB@ ||:|||| ||| | ||||||||@LB@ AUUUAUU AUU C UACUAUCG@LB@3'-UUU...CCAUU UCA A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.9916 kcal/mol@LB@Unfolding Energy - mRNA 3.74778 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 1 -- 7@LB@ |