157 |
0.01768 |
0.3749 |
b1216 |
chaA |
-11.60 |
0.134178 |
242 -- 292 |
18 -- 65 |
calcium/sodium:proton antiporter |
|
_____________241_______________293\n_____________|_________________|\n5'-AUU...AAUGU_________C___A___UUUCU...GCC-3'\n______________UACCGAUAU_CAG_CAC\n______________:|||:|||:_|||_|||\n______________GUGGUUAUG_GUC_GUG\n3'-UUU...AAAAU_________A___A___UGUAC...UAG-5'\n_____________|_________________|\n_____________66________________17\n |
120 -- 126 |
178 -- 184 |
-16.2011 kcal/mol |
3.68451 kcal/mol |
4.86651 kcal/mol |
241 293@LB@ | |@LB@5'-AUU...AAUGU C A UUUCU...GCC-3'@LB@ UACCGAUAU CAG CAC@LB@ :|||:|||: ||| |||@LB@ GUGGUUAUG GUC GUG@LB@3'-UUU...AAAAU A A UGUAC...UAG-5'@LB@ | |@LB@ 66 17@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.2011 kcal/mol@LB@Unfolding Energy - mRNA 3.68451 kcal/mol@LB@Unfolding Energy - sRNA 4.86651 kcal/mol@LB@@LB@Position - mRNA 242 -- 292@LB@Position - sRNA 18 -- 65@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 178 -- 184@LB@ |
195 |
0.02319 |
0.3833 |
b1233 |
ychJ |
-7.86 |
0.620262 |
61 -- 80 |
1 -- 18 |
UPF0225 family protein |
|
_____________60____________________________________81\n_____________|_____________________________________|\n5'-CUU...GCUAC_______________A___CUACU_____________ACGCC...UCA-3'\n______________UGCUCGGUUA_ACAU_GUG_____CAGGC_GGUUAAU\n______________|:|||:||:|_||||_:||_____|||||_:||:||:\n______________AUGAGUCAGU_UGUA_UAC_____GUCCG_UCAGUUG\n3'-UUU...UGGUU__________G____C_____________U_______AAAGU...UAG-5'\n_____________|_____________________________________|\n_____________19____________________________________0\n |
139 -- 145 |
171 -- 177 |
-29.0991 kcal/mol |
9.80481 kcal/mol |
8.18679 kcal/mol |
60 81@LB@ | |@LB@5'-CUU...GCUAC A CUACU ACGCC...UCA-3'@LB@ UGCUCGGUUA ACAU GUG CAGGC GGUUAAU@LB@ |:|||:||:| |||| :|| ||||| :||:||:@LB@ AUGAGUCAGU UGUA UAC GUCCG UCAGUUG@LB@3'-UUU...UGGUU G C U AAAGU...UAG-5'@LB@ | |@LB@ 19 0@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -29.0991 kcal/mol@LB@Unfolding Energy - mRNA 9.80481 kcal/mol@LB@Unfolding Energy - sRNA 8.18679 kcal/mol@LB@@LB@Position - mRNA 61 -- 80@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 171 -- 177@LB@ |
74 |
0.007724 |
0.3458 |
b1261 |
trpB |
-16.40 |
0.014006 |
36 -- 47 |
195 -- 206 |
tryptophan synthase beta subunit |
|
_____________35___________48\n_____________|____________|\n5'-UGG...AACGU____________GGGCU...UCA-3'\n______________UCUGCUGGCGGG\n______________||||||||||||\n______________AGACGACCGCCC\n3'-UUU...AUAUU____________ACUAA...UAG-5'\n_____________|____________|\n_____________207__________194\n |
41 -- 47 |
195 -- 201 |
-26.9412 kcal/mol |
6.0368 kcal/mol |
9.05854 kcal/mol |
35 48@LB@ | |@LB@5'-UGG...AACGU GGGCU...UCA-3'@LB@ UCUGCUGGCGGG@LB@ ||||||||||||@LB@ AGACGACCGCCC@LB@3'-UUU...AUAUU ACUAA...UAG-5'@LB@ | |@LB@ 207 194@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -26.9412 kcal/mol@LB@Unfolding Energy - mRNA 6.0368 kcal/mol@LB@Unfolding Energy - sRNA 9.05854 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 195 -- 206@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 195 -- 201@LB@ |
49 |
0.004667 |
0.3205 |
b1277 |
ribA |
-9.86 |
0.291903 |
241 -- 249 |
16 -- 24 |
GTP cyclohydrolase II |
|
_____________240________250\n_____________|__________|\n5'-CCA...AAUAC__________UUAUC...UCG-3'\n______________AGAACCAGCA\n______________|:||||||||\n______________UUUUGGUCGU\n_______3'-UUUU__________CCAUA...UAG-5'\n_____________|__________|\n_____________25_________15\n |
178 -- 184 |
214 -- 220 |
-13.9783 kcal/mol |
2.87719 kcal/mol |
5.75438 kcal/mol |
240 250@LB@ | |@LB@5'-CCA...AAUAC UUAUC...UCG-3'@LB@ AGAACCAGCA@LB@ |:||||||||@LB@ UUUUGGUCGU@LB@ 3'-UUUU CCAUA...UAG-5'@LB@ | |@LB@ 25 15@LB@@LB@@LB@Energy -9.86 kcal/mol@LB@Hybridization Energy -13.9783 kcal/mol@LB@Unfolding Energy - mRNA 2.87719 kcal/mol@LB@Unfolding Energy - sRNA 5.75438 kcal/mol@LB@@LB@Position - mRNA 241 -- 249@LB@Position - sRNA 16 -- 24@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 214 -- 220@LB@ |
39 |
0.003509 |
0.2912 |
b1293 |
sapB |
-10.75 |
0.197427 |
9 -- 16 |
196 -- 203 |
antimicrobial peptide transport ABC transporter permease |
|
_____________8____________17\n_____________|____________|\n5'-UCG...UAUUU_______CA___GC-3'\n______________CACCCCU__UGC\n______________||||||:__|||\n______________GUGGGGG__ACG\n3'-UUU...ACCCC_______A____AAGUAG-5'\n_____________|____________|\n_____________204__________195\n |
287 -- 293 |
11 -- 17 |
-15.5024 kcal/mol |
0.267702 kcal/mol |
6.55606 kcal/mol |
8 17@LB@ | |@LB@5'-UCG...UAUUU CA GC-3'@LB@ CACCCCU UGC@LB@ ||||||: |||@LB@ GUGGGGG ACG@LB@3'-UUU...ACCCC A AAGUAG-5'@LB@ | |@LB@ 204 195@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.5024 kcal/mol@LB@Unfolding Energy - mRNA 0.267702 kcal/mol@LB@Unfolding Energy - sRNA 6.55606 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 196 -- 203@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 11 -- 17@LB@ |
110 |
0.01217 |
0.3575 |
b1324 |
tpx |
-10.54 |
0.217228 |
251 -- 258 |
126 -- 133 |
lipid hydroperoxide peroxidase |
|
_____________250____________259\n_____________|______________|\n5'-GCG...ACUCC______________GUCUG...AAG-3'\n______________UUGUUGUCGCGGUG\n______________|:|:|||||||||:\n______________AGCGACAGCGCCAU\n3'-UUU...GUUGA______________UUUAU...UAG-5'\n_____________|______________|\n_____________134____________125\n |
99 -- 105 |
48 -- 54 |
-22.761 kcal/mol |
7.03952 kcal/mol |
5.88061 kcal/mol |
250 259@LB@ | |@LB@5'-GCG...ACUCC GUCUG...AAG-3'@LB@ UUGUUGUCGCGGUG@LB@ |:|:|||||||||:@LB@ AGCGACAGCGCCAU@LB@3'-UUU...GUUGA UUUAU...UAG-5'@LB@ | |@LB@ 134 125@LB@@LB@@LB@Energy -10.54 kcal/mol@LB@Hybridization Energy -22.761 kcal/mol@LB@Unfolding Energy - mRNA 7.03952 kcal/mol@LB@Unfolding Energy - sRNA 5.88061 kcal/mol@LB@@LB@Position - mRNA 251 -- 258@LB@Position - sRNA 126 -- 133@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 48 -- 54@LB@ |
112 |
0.01232 |
0.3575 |
b1540 |
rspR |
-15.19 |
0.024761 |
13 -- 44 |
171 -- 202 |
transcriptional repressor for rspAB |
|
_____________12_________________________________________________________45\n_____________|__________________________________________________________|\n5'-CAG...GCCGU__________UCA_______GCC______C___A____CAAUACCCUGGAA_______CGGUU...GCA-3'\n______________CUGGUGGGUG_____ACGCU___UGCUCA_GUC_AUAU_____________AUGAUGC\n______________||||:|||||_____||:|:___|:||||_|||_|:|:_____________|||||||\n______________GACCGCCCAC_____UGUGG___AUGAGU_CAG_UGUG_____________UACUACG\n3'-UUU...UAGAC__________UAAAA_____UU____________________________________UCCGU...UAG-5'\n_____________|__________________________________________________________|\n_____________203________________________________________________________170\n |
62 -- 68 |
161 -- 167 |
-40.6001 kcal/mol |
15.8189 kcal/mol |
17.3482 kcal/mol |
12 45@LB@ | |@LB@5'-CAG...GCCGU UCA GCC C A CAAUACCCUGGAA CGGUU...GCA-3'@LB@ CUGGUGGGUG ACGCU UGCUCA GUC AUAU AUGAUGC@LB@ ||||:||||| ||:|: |:|||| ||| |:|: |||||||@LB@ GACCGCCCAC UGUGG AUGAGU CAG UGUG UACUACG@LB@3'-UUU...UAGAC UAAAA UU UCCGU...UAG-5'@LB@ | |@LB@ 203 170@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -40.6001 kcal/mol@LB@Unfolding Energy - mRNA 15.8189 kcal/mol@LB@Unfolding Energy - sRNA 17.3482 kcal/mol@LB@@LB@Position - mRNA 13 -- 44@LB@Position - sRNA 171 -- 202@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 161 -- 167@LB@ |
118 |
0.01293 |
0.3575 |
b1598 |
ydgD |
-17.08 |
0.010207 |
53 -- 140 |
115 -- 186 |
putative peptidase |
|
_____________52______________________________________________________________________141\n_____________|_______________________________________________________________________|\n5'-CUU...AUCCU_____UAUG__________UACC__CC___UUUAU_____CU______A____UCUGAUUUUAC_______UUCAU...AGG-3'\n______________UAUUU____CGCAC_UGAU____GC__GUU_____CUUUC__GAUUGU_GUUA___________UCCCACU\n______________||:|:____|:|||_||||____||__||:_____|||||__:||||:_||:|___________|||||||\n______________AUGAG____GUGUG_ACUA____CG__CAG_____GAAAG__UUAACG_CAGU___________AGGGUGA\n3'-UUU...UGGUU_____UCA______U____CGUC__UU___UU________UC______C______________________CGUAG...UAG-5'\n_____________|_______________________________________________________________________|\n_____________187_____________________________________________________________________114\n |
122 -- 128 |
125 -- 131 |
-34.2678 kcal/mol |
6.55961 kcal/mol |
16.6417 kcal/mol |
52 141@LB@ | |@LB@5'-CUU...AUCCU UAUG UACC CC UUUAU CU A UCUGAUUUUAC UUCAU...AGG-3'@LB@ UAUUU CGCAC UGAU GC GUU CUUUC GAUUGU GUUA UCCCACU@LB@ ||:|: |:||| |||| || ||: ||||| :||||: ||:| |||||||@LB@ AUGAG GUGUG ACUA CG CAG GAAAG UUAACG CAGU AGGGUGA@LB@3'-UUU...UGGUU UCA U CGUC UU UU UC C CGUAG...UAG-5'@LB@ | |@LB@ 187 114@LB@@LB@@LB@Energy -17.08 kcal/mol@LB@Hybridization Energy -34.2678 kcal/mol@LB@Unfolding Energy - mRNA 6.55961 kcal/mol@LB@Unfolding Energy - sRNA 16.6417 kcal/mol@LB@@LB@Position - mRNA 53 -- 140@LB@Position - sRNA 115 -- 186@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 125 -- 131@LB@ |
143 |
0.01531 |
0.3575 |
b1641 |
slyB |
-10.83 |
0.190300 |
158 -- 167 |
83 -- 92 |
outer membrane lipoprotein |
|
_____________157____________________________168\n_____________|______________________________|\n5'-CCG...UCACA_______U______UGAC____AGG_____UUGCG...AAG-3'\n______________UAUGCCA_AUACUU____CAUG___GAUGC\n______________||::|||_|||||:____||::___|||||\n______________AUGUGGU_UAUGAG____GUGU___CUACG\n3'-UUU...CUAAA______________UCA_____GUA_____UCCGU...UAG-5'\n_____________|______________________________|\n_____________93_____________________________82\n |
135 -- 141 |
182 -- 188 |
-20.8318 kcal/mol |
7.22081 kcal/mol |
7.72227 kcal/mol |
157 168@LB@ | |@LB@5'-CCG...UCACA U UGAC AGG UUGCG...AAG-3'@LB@ UAUGCCA AUACUU CAUG GAUGC@LB@ ||::||| |||||: ||:: |||||@LB@ AUGUGGU UAUGAG GUGU CUACG@LB@3'-UUU...CUAAA UCA GUA UCCGU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -20.8318 kcal/mol@LB@Unfolding Energy - mRNA 7.22081 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 158 -- 167@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 182 -- 188@LB@ |
191 |
0.02237 |
0.3833 |
b1658 |
purR |
-11.05 |
0.172432 |
254 -- 265 |
163 -- 174 |
transcriptional repressor hypoxanthine-binding |
|
_____________253_______________266\n_____________|_________________|\n5'-UUU...CUACA___GU____________CAACA...GCA-3'\n______________ACU__GUCACACGUGAU\n______________|||__|||||||:||||\n______________UGA__CAGUGUGUACUA\n3'-UUU...GGUUA___GU____________CGUCC...UAG-5'\n_____________|_________________|\n_____________175_______________162\n |
259 -- 265 |
163 -- 169 |
-20.3148 kcal/mol |
3.57431 kcal/mol |
4.30742 kcal/mol |
253 266@LB@ | |@LB@5'-UUU...CUACA GU CAACA...GCA-3'@LB@ ACU GUCACACGUGAU@LB@ ||| |||||||:||||@LB@ UGA CAGUGUGUACUA@LB@3'-UUU...GGUUA GU CGUCC...UAG-5'@LB@ | |@LB@ 175 162@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -20.3148 kcal/mol@LB@Unfolding Energy - mRNA 3.57431 kcal/mol@LB@Unfolding Energy - sRNA 4.30742 kcal/mol@LB@@LB@Position - mRNA 254 -- 265@LB@Position - sRNA 163 -- 174@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 163 -- 169@LB@ |