15 |
0.0008498 |
0.1886 |
b4254 |
argI |
-15.11 |
0.025648 |
62 -- 84 |
167 -- 185 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________61______________________85\n_____________|_______________________|\n5'-UUC...GUCCU__________UUAUU________CCACU...AUA-3'\n______________GCCGAUACUC_____GUCACACA\n______________:||:||||||_____||||||||\n______________UGGUUAUGAG_____CAGUGUGU\n3'-UUU...AAAUG__________U____________ACUAC...UAG-5'\n_____________|_______________________|\n_____________186_____________________166\n |
78 -- 84 |
167 -- 173 |
-24.735 kcal/mol |
3.62809 kcal/mol |
5.02083 kcal/mol |
61 85@LB@ | |@LB@5'-UUC...GUCCU UUAUU CCACU...AUA-3'@LB@ GCCGAUACUC GUCACACA@LB@ :||:|||||| ||||||||@LB@ UGGUUAUGAG CAGUGUGU@LB@3'-UUU...AAAUG U ACUAC...UAG-5'@LB@ | |@LB@ 186 166@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -24.735 kcal/mol@LB@Unfolding Energy - mRNA 3.62809 kcal/mol@LB@Unfolding Energy - sRNA 5.02083 kcal/mol@LB@@LB@Position - mRNA 62 -- 84@LB@Position - sRNA 167 -- 185@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 167 -- 173@LB@ |
94 |
0.01043 |
0.3575 |
b4293 |
fecI |
-12.90 |
0.072974 |
203 -- 229 |
60 -- 87 |
RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor |
|
_____________202_______________________230\n_____________|_________________________|\n5'-AAU...AUCCC__________UAC_____UA_____UUAGA...AGU-3'\n______________AUUUUAUACC____CUUA___ACAC\n______________||||||:|||____||:|___||||\n______________UAAAAUGUGG____GAGU___UGUG\n3'-UUU...CCCAC__________UUAU____CAG____UACUA...UAG-5'\n_____________|_________________________|\n_____________88________________________59\n |
66 -- 72 |
183 -- 189 |
-15.6606 kcal/mol |
1.17775 kcal/mol |
4.92862 kcal/mol |
202 230@LB@ | |@LB@5'-AAU...AUCCC UAC UA UUAGA...AGU-3'@LB@ AUUUUAUACC CUUA ACAC@LB@ ||||||:||| ||:| ||||@LB@ UAAAAUGUGG GAGU UGUG@LB@3'-UUU...CCCAC UUAU CAG UACUA...UAG-5'@LB@ | |@LB@ 88 59@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -15.6606 kcal/mol@LB@Unfolding Energy - mRNA 1.17775 kcal/mol@LB@Unfolding Energy - sRNA 4.92862 kcal/mol@LB@@LB@Position - mRNA 203 -- 229@LB@Position - sRNA 60 -- 87@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 183 -- 189@LB@ |
61 |
0.006025 |
0.3261 |
b4330 |
yjiH |
-10.68 |
0.204041 |
214 -- 227 |
80 -- 92 |
nucleoside recognition pore and gate family putative inner membrane transporter |
|
_____________213______228\n_____________|________|\n5'-ACU...ACAAG________GUAGC...CCG-3'\n______________GGGAUGCU\n______________||||:|||\n______________CCCUGCGA\n3'-UUU...CAACA________AUUGG...UAG-5'\n_____________|________|\n_____________93_______79\n |
215 -- 221 |
85 -- 91 |
-14.2816 kcal/mol |
2.08889 kcal/mol |
5.76908 kcal/mol |
213 228@LB@ | |@LB@5'-ACU...ACAAG GUAGC...CCG-3'@LB@ GGGAUGCU@LB@ ||||:|||@LB@ CCCUGCGA@LB@3'-UUU...CAACA AUUGG...UAG-5'@LB@ | |@LB@ 93 79@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -14.2816 kcal/mol@LB@Unfolding Energy - mRNA 2.08889 kcal/mol@LB@Unfolding Energy - sRNA 5.76908 kcal/mol@LB@@LB@Position - mRNA 214 -- 227@LB@Position - sRNA 80 -- 92@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 85 -- 91@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
192 |
0.02246 |
0.3833 |
b4340 |
yjiR |
-11.68 |
0.128907 |
36 -- 62 |
126 -- 153 |
putative DNA-binding transcriptional regulator/putative aminotransferase |
|
_____________35_______63\n_____________|________|\n5'-AGC...CAGAG________AUCCA...GUC-3'\n______________GCUUCAUC\n______________||||||||\n______________CGAAGUAG\n3'-UUU...GGGAA________-5'\n_____________|_______|\n_____________154_____126\n |
50 -- 56 |
1 -- 7 |
-12.7164 kcal/mol |
1.73081 kcal/mol |
0.703102 kcal/mol |
35 63@LB@ | |@LB@5'-AGC...CAGAG AUCCA...GUC-3'@LB@ GCUUCAUC@LB@ ||||||||@LB@ CGAAGUAG@LB@3'-UUU...GGGAA -5'@LB@ | |@LB@ 154 126@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -12.7164 kcal/mol@LB@Unfolding Energy - mRNA 1.73081 kcal/mol@LB@Unfolding Energy - sRNA 0.703102 kcal/mol@LB@@LB@Position - mRNA 36 -- 62@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 1 -- 7@LB@ |
168 |
0.01937 |
0.3812 |
b4354 |
yjiY |
-11.43 |
0.145336 |
99 -- 125 |
132 -- 159 |
putative transporter |
|
_____________98__________________________________________________126\n_____________|___________________________________________________|\n5'-CUU...UACCU_____UACG_______AACUCU_____CA______A_______A_______AUUUA...ACA-3'\n______________UACUU____CGCGCGU______GGCAA__UC_ACU__CAGGAU_GCGGUCA\n______________||||:____|:|:|:|______|||||__||_|||__|||:||_|||||||\n______________AUGAG____GUGUGUA______CCGUU__AG_UGA__GUCUUA_CGCCAGU\n3'-UUU...UGGUU_____UCA________CUACGU_____C___U___AA______A_______AGGGU...UAG-5'\n_____________|___________________________________________________|\n_____________160_________________________________________________131\n |
119 -- 125 |
132 -- 138 |
-39.8751 kcal/mol |
13.2469 kcal/mol |
12.8104 kcal/mol |
98 126@LB@ | |@LB@5'-CUU...UACCU UACG AACUCU CA A A AUUUA...ACA-3'@LB@ UACUU CGCGCGU GGCAA UC ACU CAGGAU GCGGUCA@LB@ ||||: |:|:|:| ||||| || ||| |||:|| |||||||@LB@ AUGAG GUGUGUA CCGUU AG UGA GUCUUA CGCCAGU@LB@3'-UUU...UGGUU UCA CUACGU C U AA A AGGGU...UAG-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -39.8751 kcal/mol@LB@Unfolding Energy - mRNA 13.2469 kcal/mol@LB@Unfolding Energy - sRNA 12.8104 kcal/mol@LB@@LB@Position - mRNA 99 -- 125@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 132 -- 138@LB@ |
146 |
0.01559 |
0.358 |
b4394 |
yjjX |
-8.60 |
0.483218 |
101 -- 114 |
123 -- 137 |
non-canonical purine NTP phosphatase ITPase/XTPase |
|
_____________100__________________________________115\n_____________|____________________________________|\n5'-UGC...AAUCC______A______________UC________UU___CGAGA...CAU-3'\n______________CGCUAA_AUUCAG__GC_CAU__UGCAGGCA__UCA\n______________|:|:||_|:||||__:|_|||__||||||||__|||\n______________GUGGUU_UGAGUC__UG_GUA__ACGUCCGU__AGU\n3'-UUU...AAAAU______A______AG__U___CU________UC___UGAAA...UAG-5'\n_____________|____________________________________|\n_____________138__________________________________122\n |
254 -- 260 |
156 -- 162 |
-32.2061 kcal/mol |
8.98762 kcal/mol |
12.5635 kcal/mol |
100 115@LB@ | |@LB@5'-UGC...AAUCC A UC UU CGAGA...CAU-3'@LB@ CGCUAA AUUCAG GC CAU UGCAGGCA UCA@LB@ |:|:|| |:|||| :| ||| |||||||| |||@LB@ GUGGUU UGAGUC UG GUA ACGUCCGU AGU@LB@3'-UUU...AAAAU A AG U CU UC UGAAA...UAG-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -32.2061 kcal/mol@LB@Unfolding Energy - mRNA 8.98762 kcal/mol@LB@Unfolding Energy - sRNA 12.5635 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 156 -- 162@LB@ |
5 |
0.0001254 |
0.08442 |
b4481 |
wecF |
-11.27 |
0.155862 |
165 -- 206 |
62 -- 99 |
TDP-Fuc4NAc:lipidIIFuc4NAc transferase |
|
_____________164_____________________________________207\n_____________|_______________________________________|\n5'-UUU...GCGUC___G_____U_____UC__GC___________CAG____CUUUA...ACG-3'\n______________ACU_CGGUU_UAUAU__UG__GG_AAGUCAGC___UUCA\n______________|||_|:||:_:|:||__||__||_||||||:|___||||\n______________UGA_GUCAG_GUGUA__AC__CC_UUCAGUUG___AAGU\n3'-UUU...GGUUA_________U_____CU__GU__G________A______CUUAA...UAG-5'\n_____________|_______________________________________|\n_____________100_____________________________________61\n |
54 -- 60 |
149 -- 155 |
-25.8626 kcal/mol |
10.7241 kcal/mol |
8.38318 kcal/mol |
164 207@LB@ | |@LB@5'-UUU...GCGUC G U UC GC CAG CUUUA...ACG-3'@LB@ ACU CGGUU UAUAU UG GG AAGUCAGC UUCA@LB@ ||| |:||: :|:|| || || ||||||:| ||||@LB@ UGA GUCAG GUGUA AC CC UUCAGUUG AAGU@LB@3'-UUU...GGUUA U CU GU G A CUUAA...UAG-5'@LB@ | |@LB@ 100 61@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -25.8626 kcal/mol@LB@Unfolding Energy - mRNA 10.7241 kcal/mol@LB@Unfolding Energy - sRNA 8.38318 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 62 -- 99@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 149 -- 155@LB@ |
144 |
0.01541 |
0.3575 |
b4555 |
yicS |
-14.57 |
0.033136 |
213 -- 290 |
115 -- 187 |
putative periplasmic protein |
|
_____________212_________________________________________________________________291\n_____________|___________________________________________________________________|\n5'-AUU...CAACG______C______UUU____UUUUUUC__U_____C______UCGUAUACGCCG_____C_______CUCAC...AGA-3'\n______________ACACUA_UGCUUA___UCAC_______GC___AUG_CAGGCA____________AGUCG_CUUUUAG\n______________||||:|_|:||:|___||||_______:|___|||_||||||____________||||:_||||:||\n______________UGUGGU_AUGAGU___AGUG_______UG___UAC_GUCCGU____________UCAGU_GAAAGUC\n3'-UUU...UAAAA______U______C_______________UAC___________________________U_______UUAAC...UAG-5'\n_____________|___________________________________________________________________|\n_____________188_________________________________________________________________114\n |
271 -- 277 |
143 -- 149 |
-34.4495 kcal/mol |
11.6435 kcal/mol |
13.2932 kcal/mol |
212 291@LB@ | |@LB@5'-AUU...CAACG C UUU UUUUUUC U C UCGUAUACGCCG C CUCAC...AGA-3'@LB@ ACACUA UGCUUA UCAC GC AUG CAGGCA AGUCG CUUUUAG@LB@ ||||:| |:||:| |||| :| ||| |||||| ||||: ||||:||@LB@ UGUGGU AUGAGU AGUG UG UAC GUCCGU UCAGU GAAAGUC@LB@3'-UUU...UAAAA U C UAC U UUAAC...UAG-5'@LB@ | |@LB@ 188 114@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -34.4495 kcal/mol@LB@Unfolding Energy - mRNA 11.6435 kcal/mol@LB@Unfolding Energy - sRNA 13.2932 kcal/mol@LB@@LB@Position - mRNA 213 -- 290@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 143 -- 149@LB@ |
169 |
0.01937 |
0.3812 |
b4557 |
yidD |
-14.07 |
0.041992 |
2 -- 13 |
11 -- 22 |
membrane protein insertion efficiency factor UPF0161 family inner membrane protein |
|
_____________1______________________14\n_____________|______________________|\n__________5'-C____________GUAUCG____UUACA...UCA-3'\n______________UGGGGCAUCCCC_______GUC\n______________|||||||:||||_______:||\n______________ACCCCGUGGGGG_______UAG\n3'-UUU...UGCGU____________AACGAAG___-5'\n_____________|_____________________|\n_____________23____________________11\n |
7 -- 13 |
11 -- 17 |
-28.608 kcal/mol |
8.24927 kcal/mol |
10.7363 kcal/mol |
1 14@LB@ | |@LB@ 5'-C GUAUCG UUACA...UCA-3'@LB@ UGGGGCAUCCCC GUC@LB@ |||||||:|||| :||@LB@ ACCCCGUGGGGG UAG@LB@3'-UUU...UGCGU AACGAAG -5'@LB@ | |@LB@ 23 11@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -28.608 kcal/mol@LB@Unfolding Energy - mRNA 8.24927 kcal/mol@LB@Unfolding Energy - sRNA 10.7363 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 11 -- 22@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 11 -- 17@LB@ |