62 |
0.006126 |
0.3261 |
b3824 |
rhtB |
-10.68 |
0.204362 |
7 -- 23 |
171 -- 187 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________6_________________24\n_____________|_________________|\n_____5'-ACGCUG_______AAA_______GCGGU...ACC-3'\n______________ACGCCAG___UCAGUCA\n______________||:|||:___|||||||\n______________UGUGGUU___AGUCAGU\n3'-UUU...UAAAA_______AUG_______GUGUA...UAG-5'\n_____________|_________________|\n_____________188_______________170\n |
17 -- 23 |
171 -- 177 |
-18.1223 kcal/mol |
1.9449 kcal/mol |
4.7016 kcal/mol |
6 24@LB@ | |@LB@ 5'-ACGCUG AAA GCGGU...ACC-3'@LB@ ACGCCAG UCAGUCA@LB@ ||:|||: |||||||@LB@ UGUGGUU AGUCAGU@LB@3'-UUU...UAAAA AUG GUGUA...UAG-5'@LB@ | |@LB@ 188 170@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -18.1223 kcal/mol@LB@Unfolding Energy - mRNA 1.9449 kcal/mol@LB@Unfolding Energy - sRNA 4.7016 kcal/mol@LB@@LB@Position - mRNA 7 -- 23@LB@Position - sRNA 171 -- 187@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 171 -- 177@LB@ |
127 |
0.01385 |
0.3575 |
b3832 |
rmuC |
-11.83 |
0.120260 |
236 -- 246 |
193 -- 203 |
DNA recombination protein |
|
_____________235____________________________________________________________247\n_____________|______________________________________________________________|\n5'-AAA...UUGUA________AUUC___UUU_____________GUU__G______AGGC_______AUU_____AUCAU...AGC-3'\n______________CAG_CACA____UAU___GUGCGGGUAAGUU___GC__UCAGG____GUUGUGG___UCUCA\n______________|||_||||____:||___:|||:||:||||:___:|__||||:____:|||:||___||:||\n______________GUC_GUGU____GUA___UACGUCCGUUCAG___UG__AGUCU____UAACGCC___AGGGU\n3'-UUU...UAUGA___A___________C_______________U____AA________________AGU_____GACGU...UAG-5'\n_____________|______________________________________________________________|\n_____________204____________________________________________________________192\n |
198 -- 204 |
135 -- 141 |
-42.9883 kcal/mol |
19.1075 kcal/mol |
15.6146 kcal/mol |
235 247@LB@ | |@LB@5'-AAA...UUGUA AUUC UUU GUU G AGGC AUU AUCAU...AGC-3'@LB@ CAG CACA UAU GUGCGGGUAAGUU GC UCAGG GUUGUGG UCUCA@LB@ ||| |||| :|| :|||:||:||||: :| ||||: :|||:|| ||:||@LB@ GUC GUGU GUA UACGUCCGUUCAG UG AGUCU UAACGCC AGGGU@LB@3'-UUU...UAUGA A C U AA AGU GACGU...UAG-5'@LB@ | |@LB@ 204 192@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -42.9883 kcal/mol@LB@Unfolding Energy - mRNA 19.1075 kcal/mol@LB@Unfolding Energy - sRNA 15.6146 kcal/mol@LB@@LB@Position - mRNA 236 -- 246@LB@Position - sRNA 193 -- 203@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 135 -- 141@LB@ |
65 |
0.006332 |
0.3261 |
b3857 |
mobA |
-11.59 |
0.134663 |
143 -- 181 |
126 -- 173 |
molybdopterin-guanine dinucleotide synthase |
|
_____________142________________________________________________________182\n_____________|__________________________________________________________|\n5'-UCC...AUAGU_______C_____U_U___GA___A__C______AG______________A_______AAUAA...AAC-3'\n______________GAUGCUC__UUAC_C_UGA__CAG_CA_GUUAGC____________GGUC_AUCCCAC\n______________:||:|||__|:||_|_|||__|||_||_||:|:|____________||||_|||||||\n______________UUAUGAG__AGUG_G_ACU__GUC_GU_CAGUUG____________CCAG_UAGGGUG\n3'-UUU...UGUGG_______UC____U_U___AC___C__U______AAAGUCUUAACG____________ACGUA...UAG-5'\n_____________|__________________________________________________________|\n_____________174________________________________________________________125\n |
175 -- 181 |
126 -- 132 |
-38.7055 kcal/mol |
10.57 kcal/mol |
15.6637 kcal/mol |
142 182@LB@ | |@LB@5'-UCC...AUAGU C U U GA A C AG A AAUAA...AAC-3'@LB@ GAUGCUC UUAC C UGA CAG CA GUUAGC GGUC AUCCCAC@LB@ :||:||| |:|| | ||| ||| || ||:|:| |||| |||||||@LB@ UUAUGAG AGUG G ACU GUC GU CAGUUG CCAG UAGGGUG@LB@3'-UUU...UGUGG UC U U AC C U AAAGUCUUAACG ACGUA...UAG-5'@LB@ | |@LB@ 174 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -38.7055 kcal/mol@LB@Unfolding Energy - mRNA 10.57 kcal/mol@LB@Unfolding Energy - sRNA 15.6637 kcal/mol@LB@@LB@Position - mRNA 143 -- 181@LB@Position - sRNA 126 -- 173@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 126 -- 132@LB@ |
107 |
0.01169 |
0.3575 |
b3858 |
yihD |
-12.50 |
0.087903 |
89 -- 104 |
63 -- 77 |
DUF1040 protein YihD |
|
_____________88______________________________105\n_____________|_______________________________|\n5'-AUA...UUUAC___CU___________GCC____AUC_____CAUCA...CGA-3'\n______________CGC__GCCAGCACAAC___UGUU___GUCGU\n______________|||__:||||||||||___:|:|___||||:\n______________GCG__UGGUCGUGUUG___GCGA___CAGCG\n3'-UUU...UGGUU___U____________AA_____________CCAUU...UAG-5'\n_____________|_______________________________|\n_____________78______________________________62\n |
98 -- 104 |
63 -- 69 |
-31.4348 kcal/mol |
4.67185 kcal/mol |
17.7932 kcal/mol |
88 105@LB@ | |@LB@5'-AUA...UUUAC CU GCC AUC CAUCA...CGA-3'@LB@ CGC GCCAGCACAAC UGUU GUCGU@LB@ ||| :|||||||||| :|:| ||||:@LB@ GCG UGGUCGUGUUG GCGA CAGCG@LB@3'-UUU...UGGUU U AA CCAUU...UAG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -31.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.67185 kcal/mol@LB@Unfolding Energy - sRNA 17.7932 kcal/mol@LB@@LB@Position - mRNA 89 -- 104@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 63 -- 69@LB@ |
35 |
0.002845 |
0.2736 |
b3887 |
dtd |
-14.98 |
0.027287 |
55 -- 74 |
191 -- 211 |
D-tyr-tRNA(Tyr) deacylase |
|
_____________54____________________75\n_____________|_____________________|\n5'-GGA...UCAUU______G______________CCCCA...UCG-3'\n______________UAUGGU_UGCUGGCGG_UGAU\n______________|||::|_|||||||||_||||\n______________AUAUUA_ACGACCGCC_ACUA\n3'-UUU...CGUCC______G_________C____AAAUG...UAG-5'\n_____________|_____________________|\n_____________212___________________190\n |
64 -- 70 |
196 -- 202 |
-27.702 kcal/mol |
6.2401 kcal/mol |
11.5765 kcal/mol |
54 75@LB@ | |@LB@5'-GGA...UCAUU G CCCCA...UCG-3'@LB@ UAUGGU UGCUGGCGG UGAU@LB@ |||::| ||||||||| ||||@LB@ AUAUUA ACGACCGCC ACUA@LB@3'-UUU...CGUCC G C AAAUG...UAG-5'@LB@ | |@LB@ 212 190@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -27.702 kcal/mol@LB@Unfolding Energy - mRNA 6.2401 kcal/mol@LB@Unfolding Energy - sRNA 11.5765 kcal/mol@LB@@LB@Position - mRNA 55 -- 74@LB@Position - sRNA 191 -- 211@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 196 -- 202@LB@ |
3 |
8.668e-05 |
0.08442 |
b3892 |
fdoI |
-15.80 |
0.018551 |
255 -- 278 |
1 -- 22 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________254_________________279\n_____________|___________________|\n5'-CCA...UGGAU____G___UC_________CUGGC...UGG-3'\n______________CACC_CCU__UGCUUCAUC\n______________||||_|||__|||||||||\n______________GUGG_GGA__ACGAAGUAG\n3'-UUU...ACCCC____G______________-5'\n_____________|__________________|\n_____________23_________________1\n |
272 -- 278 |
1 -- 7 |
-24.2792 kcal/mol |
4.44512 kcal/mol |
7.16879 kcal/mol |
254 279@LB@ | |@LB@5'-CCA...UGGAU G UC CUGGC...UGG-3'@LB@ CACC CCU UGCUUCAUC@LB@ |||| ||| |||||||||@LB@ GUGG GGA ACGAAGUAG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -24.2792 kcal/mol@LB@Unfolding Energy - mRNA 4.44512 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 255 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
170 |
0.01941 |
0.3812 |
b3911 |
cpxA |
-13.13 |
0.065341 |
265 -- 299 |
168 -- 204 |
sensory histidine kinase in two-component regulatory system with CpxR |
|
_____________264______300\n_____________|________|\n5'-UAU...GUUUC________GAUAG...GCC-3'\n______________UGCUUCAU\n______________||||||||\n______________ACGAAGUA\n3'-UUU...GGGGA________G-5'\n_____________|________|\n_____________205______167\n |
196 -- 202 |
2 -- 8 |
-10.3801 kcal/mol |
3.0426 kcal/mol |
0.709873 kcal/mol |
264 300@LB@ | |@LB@5'-UAU...GUUUC GAUAG...GCC-3'@LB@ UGCUUCAU@LB@ ||||||||@LB@ ACGAAGUA@LB@3'-UUU...GGGGA G-5'@LB@ | |@LB@ 205 167@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -10.3801 kcal/mol@LB@Unfolding Energy - mRNA 3.0426 kcal/mol@LB@Unfolding Energy - sRNA 0.709873 kcal/mol@LB@@LB@Position - mRNA 265 -- 299@LB@Position - sRNA 168 -- 204@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 2 -- 8@LB@ |
160 |
0.01787 |
0.3749 |
b3935 |
priA |
-8.27 |
0.542824 |
222 -- 250 |
110 -- 140 |
Primosome factor n' (replication factor Y) |
|
_____________221_________________________251\n_____________|___________________________|\n5'-GAA...UAACC______AU___A_____G_________UAUGC...GCG-3'\n______________CACCGA__UUC_AGUCA_G_AUGAUGC\n______________||||:|__:||_|||||_:_|||||||\n______________GUGGUU__GAG_UCAGU_U_UACUACG\n3'-UUU...AAAAU______AU_________G_G_______UCCGU...UAG-5'\n_____________|___________________________|\n_____________141_________________________109\n |
193 -- 199 |
161 -- 167 |
-24.457 kcal/mol |
4.47787 kcal/mol |
7.72013 kcal/mol |
221 251@LB@ | |@LB@5'-GAA...UAACC AU A G UAUGC...GCG-3'@LB@ CACCGA UUC AGUCA G AUGAUGC@LB@ ||||:| :|| ||||| : |||||||@LB@ GUGGUU GAG UCAGU U UACUACG@LB@3'-UUU...AAAAU AU G G UCCGU...UAG-5'@LB@ | |@LB@ 141 109@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -24.457 kcal/mol@LB@Unfolding Energy - mRNA 4.47787 kcal/mol@LB@Unfolding Energy - sRNA 7.72013 kcal/mol@LB@@LB@Position - mRNA 222 -- 250@LB@Position - sRNA 110 -- 140@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 161 -- 167@LB@ |
137 |
0.01486 |
0.3575 |
b3967 |
murI |
-16.98 |
0.010727 |
107 -- 167 |
42 -- 96 |
glutamate racemase |
|
_____________106__________________________168\n_____________|____________________________|\n5'-GUU...GACUG________ACU_____________G___UCGCU...GGU-3'\n______________GGGU_AUU___UAUCAGUAUUUAG_CAC\n______________||||_|||___:|:||:||:|:||_|||\n______________CCCA_UAA___GUGGUUAUGAGUC_GUG\n3'-UUU...GACCG____C___AAU_____________A___UGUAC...UAG-5'\n_____________|____________________________|\n_____________97___________________________41\n |
35 -- 41 |
174 -- 180 |
-22.1424 kcal/mol |
5.45848 kcal/mol |
5.03792 kcal/mol |
106 168@LB@ | |@LB@5'-GUU...GACUG ACU G UCGCU...GGU-3'@LB@ GGGU AUU UAUCAGUAUUUAG CAC@LB@ |||| ||| :|:||:||:|:|| |||@LB@ CCCA UAA GUGGUUAUGAGUC GUG@LB@3'-UUU...GACCG C AAU A UGUAC...UAG-5'@LB@ | |@LB@ 97 41@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -22.1424 kcal/mol@LB@Unfolding Energy - mRNA 5.45848 kcal/mol@LB@Unfolding Energy - sRNA 5.03792 kcal/mol@LB@@LB@Position - mRNA 107 -- 167@LB@Position - sRNA 42 -- 96@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 174 -- 180@LB@ |
90 |
0.01008 |
0.3575 |
b3994 |
thiC |
-11.53 |
0.138483 |
145 -- 158 |
1 -- 14 |
phosphomethylpyrimidine synthase |
|
_____________144_________159\n_____________|___________|\n5'-AUG...CGUCU___________CGUCG...UUU-3'\n______________CUUGCUUCAUC\n______________|||||||||||\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________15_________1\n |
152 -- 158 |
1 -- 7 |
-17.5294 kcal/mol |
1.22878 kcal/mol |
1.03329 kcal/mol |
144 159@LB@ | |@LB@5'-AUG...CGUCU CGUCG...UUU-3'@LB@ CUUGCUUCAUC@LB@ |||||||||||@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -17.5294 kcal/mol@LB@Unfolding Energy - mRNA 1.22878 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 145 -- 158@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |