172 |
0.01969 |
0.3812 |
b0213 |
yafS |
-9.47 |
0.344290 |
95 -- 113 |
1 -- 19 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________94________114\n_____________|_________|\n5'-UGG...UCAAA_________CUCCU...UCA-3'\n______________CUGUCGUGG\n______________||||||:||\n______________GACAGCGCC\n3'-UUU...GAAGC_________AUUUU...UAG-5'\n_____________|_________|\n_____________20________0\n |
228 -- 234 |
50 -- 56 |
-16.2917 kcal/mol |
2.78861 kcal/mol |
4.02 kcal/mol |
94 114@LB@ | |@LB@5'-UGG...UCAAA CUCCU...UCA-3'@LB@ CUGUCGUGG@LB@ ||||||:||@LB@ GACAGCGCC@LB@3'-UUU...GAAGC AUUUU...UAG-5'@LB@ | |@LB@ 20 0@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -16.2917 kcal/mol@LB@Unfolding Energy - mRNA 2.78861 kcal/mol@LB@Unfolding Energy - sRNA 4.02 kcal/mol@LB@@LB@Position - mRNA 95 -- 113@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 50 -- 56@LB@ |
182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
33 |
0.002591 |
0.2642 |
b0331 |
prpB |
-22.44 |
0.000909 |
137 -- 159 |
1 -- 22 |
2-methylisocitrate lyase |
|
_____________136__________________160\n_____________|____________________|\n5'-GUC...AUUGU_____A______________UUUAU...UGG-3'\n______________GGCAC_CCCCUUGCUUUGUC\n______________|||||_||||||||||::||\n______________CCGUG_GGGGAACGAAGUAG\n3'-UUU...GUACC____________________-5'\n_____________|___________________|\n_____________23__________________1\n |
153 -- 159 |
1 -- 7 |
-33.844 kcal/mol |
4.2272 kcal/mol |
8.43224 kcal/mol |
136 160@LB@ | |@LB@5'-GUC...AUUGU A UUUAU...UGG-3'@LB@ GGCAC CCCCUUGCUUUGUC@LB@ ||||| ||||||||||::||@LB@ CCGUG GGGGAACGAAGUAG@LB@3'-UUU...GUACC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -22.44 kcal/mol@LB@Hybridization Energy -33.844 kcal/mol@LB@Unfolding Energy - mRNA 4.2272 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
136 |
0.01456 |
0.3575 |
b0369 |
hemB |
-9.31 |
0.367566 |
203 -- 221 |
75 -- 90 |
5-aminolevulinate dehydratase (porphobilinogen synthase) |
|
_____________202________________222\n_____________|__________________|\n5'-CCA...UAAAA_______ACCC_______GGUAU...UGC-3'\n______________CAUCCCU____UGCUUCA\n______________||:|||:____|||||||\n______________GUGGGGG____ACGAAGU\n3'-UUU...ACCCC_______A__________AG-5'\n_____________|__________________|\n_____________91_________________74\n |
153 -- 159 |
3 -- 9 |
-17.8942 kcal/mol |
1.92924 kcal/mol |
7.09151 kcal/mol |
202 222@LB@ | |@LB@5'-CCA...UAAAA ACCC GGUAU...UGC-3'@LB@ CAUCCCU UGCUUCA@LB@ ||:|||: |||||||@LB@ GUGGGGG ACGAAGU@LB@3'-UUU...ACCCC A AG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -17.8942 kcal/mol@LB@Unfolding Energy - mRNA 1.92924 kcal/mol@LB@Unfolding Energy - sRNA 7.09151 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 3 -- 9@LB@ |
52 |
0.005023 |
0.3217 |
b0403 |
malZ |
-9.64 |
0.320537 |
253 -- 286 |
155 -- 185 |
maltodextrin glucosidase |
|
_____________252___________________________287\n_____________|_____________________________|\n5'-UUU...UCAAC_____________U____C__A_______AGACC...AGC-3'\n______________UGCUCA_UUACAC_GUGG_UG_CGGGCGA\n______________|:||||_|:||||_:||:_||_|:|||:|\n______________AUGAGU_AGUGUG_UACU_AC_GUCCGUU\n3'-UUU...UGGUU______C______________________CAGUU...UAG-5'\n_____________|_____________________________|\n_____________186___________________________154\n |
280 -- 286 |
155 -- 161 |
-27.4446 kcal/mol |
6.9929 kcal/mol |
7.82707 kcal/mol |
252 287@LB@ | |@LB@5'-UUU...UCAAC U C A AGACC...AGC-3'@LB@ UGCUCA UUACAC GUGG UG CGGGCGA@LB@ |:|||| |:|||| :||: || |:|||:|@LB@ AUGAGU AGUGUG UACU AC GUCCGUU@LB@3'-UUU...UGGUU C CAGUU...UAG-5'@LB@ | |@LB@ 186 154@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -27.4446 kcal/mol@LB@Unfolding Energy - mRNA 6.9929 kcal/mol@LB@Unfolding Energy - sRNA 7.82707 kcal/mol@LB@@LB@Position - mRNA 253 -- 286@LB@Position - sRNA 155 -- 185@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 155 -- 161@LB@ |
98 |
0.01073 |
0.3575 |
b0424 |
yajL |
-11.45 |
0.143367 |
14 -- 29 |
155 -- 170 |
oxidative-stress-resistance chaperone |
|
_____________13_______________30\n_____________|________________|\n5'-AGA...GUGAU________________UUGAU...CCA-3'\n______________UACGUGAUGCAGGUGA\n______________:||:|||||||||::|\n______________GUGUACUACGUCCGUU\n3'-UUU...UCAGU________________CAGUU...UAG-5'\n_____________|________________|\n_____________171______________154\n |
22 -- 28 |
156 -- 162 |
-24.1359 kcal/mol |
6.48358 kcal/mol |
7.06607 kcal/mol |
13 30@LB@ | |@LB@5'-AGA...GUGAU UUGAU...CCA-3'@LB@ UACGUGAUGCAGGUGA@LB@ :||:|||||||||::|@LB@ GUGUACUACGUCCGUU@LB@3'-UUU...UCAGU CAGUU...UAG-5'@LB@ | |@LB@ 171 154@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -24.1359 kcal/mol@LB@Unfolding Energy - mRNA 6.48358 kcal/mol@LB@Unfolding Energy - sRNA 7.06607 kcal/mol@LB@@LB@Position - mRNA 14 -- 29@LB@Position - sRNA 155 -- 170@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 156 -- 162@LB@ |
105 |
0.01118 |
0.3575 |
b0439 |
lon |
-14.09 |
0.041610 |
272 -- 293 |
1 -- 24 |
DNA-binding ATP-dependent protease La |
|
_____________271_______294\n_____________|_________|\n5'-AUC...CACAU_________CUUAU...GGG-3'\n______________GGUCAUCCC\n______________|||||||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________25________0\n |
277 -- 283 |
128 -- 134 |
-16.7868 kcal/mol |
1.03204 kcal/mol |
4.55487 kcal/mol |
271 294@LB@ | |@LB@5'-AUC...CACAU CUUAU...GGG-3'@LB@ GGUCAUCCC@LB@ |||||||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 25 0@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -16.7868 kcal/mol@LB@Unfolding Energy - mRNA 1.03204 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 128 -- 134@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
2 |
4.964e-05 |
0.08352 |
b0475 |
hemH |
-12.83 |
0.075395 |
238 -- 275 |
45 -- 93 |
ferrochelatase |
|
_____________237______________________________________________________________________276\n_____________|________________________________________________________________________|\n5'-CGG...AGACU_______________C__________AAACCU_____________C_______C_C_______C___A____UAAAA...GCG-3'\n______________AAAACC____GGUAU___CUGCUGGC______GGGU______ACG_CCGAUGC_C___CACAC_UGA_GCGG\n______________||||||____|||||___||||||||______||||______||:_||:||:|_|___|||||_|||_||:|\n______________UUUUGG____CCAUA___GACGACCG______CCCA______UGU_GGUUAUG_G___GUGUG_ACU_CGUC\n_______3'-UUUU______UCGU_____UUA__________________CUAAAA___________A_UCA_____U___A____CGUUC...UAG-5'\n_____________|________________________________________________________________________|\n_____________94_______________________________________________________________________44\n |
247 -- 253 |
178 -- 184 |
-50.8068 kcal/mol |
15.6732 kcal/mol |
22.9013 kcal/mol |
237 276@LB@ | |@LB@5'-CGG...AGACU C AAACCU C C C C A UAAAA...GCG-3'@LB@ AAAACC GGUAU CUGCUGGC GGGU ACG CCGAUGC C CACAC UGA GCGG@LB@ |||||| ||||| |||||||| |||| ||: ||:||:| | ||||| ||| ||:|@LB@ UUUUGG CCAUA GACGACCG CCCA UGU GGUUAUG G GUGUG ACU CGUC@LB@ 3'-UUUU UCGU UUA CUAAAA A UCA U A CGUUC...UAG-5'@LB@ | |@LB@ 94 44@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -50.8068 kcal/mol@LB@Unfolding Energy - mRNA 15.6732 kcal/mol@LB@Unfolding Energy - sRNA 22.9013 kcal/mol@LB@@LB@Position - mRNA 238 -- 275@LB@Position - sRNA 45 -- 93@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 178 -- 184@LB@ |
89 |
0.009985 |
0.3575 |
b0477 |
gsk |
-9.51 |
0.338446 |
88 -- 115 |
123 -- 150 |
inosine/guanosine kinase |
|
_____________87_____________116\n_____________|______________|\n5'-UUU...UCGCC_________AC___CCGUA...CUG-3'\n______________GCUCAGUUA__CAC\n______________:||||||:|__|||\n______________UGAGUCAGU__GUG\n3'-UUU...GGUUA______________UACUA...UAG-5'\n_____________|______________|\n_____________151____________122\n |
175 -- 181 |
171 -- 177 |
-13.3754 kcal/mol |
2.68541 kcal/mol |
0.283892 kcal/mol |
87 116@LB@ | |@LB@5'-UUU...UCGCC AC CCGUA...CUG-3'@LB@ GCUCAGUUA CAC@LB@ :||||||:| |||@LB@ UGAGUCAGU GUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 151 122@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.3754 kcal/mol@LB@Unfolding Energy - mRNA 2.68541 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 88 -- 115@LB@Position - sRNA 123 -- 150@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 171 -- 177@LB@ |