33 |
0.001538 |
0.1635 |
b4141 |
yjeH |
-13.95 |
0.048780 |
254 -- 275 |
1 -- 22 |
putative transporter |
|
_____________253____________________276\n_____________|______________________|\n5'-CAG...CUAUC_______UUAUU_____C____GUGUU...CUG-3'\n______________GACGUCA_____AGGCA_UGGC\n______________|||:|||_____|:|||_||||\n______________CUGUAGU_____UUCGU_ACCG\n3'-UUU...UACCC_______UUCUU_____C____-5'\n_____________|_____________________|\n_____________23____________________1\n |
254 -- 260 |
16 -- 22 |
-22.2624 kcal/mol |
6.77205 kcal/mol |
1.54023 kcal/mol |
253 276@LB@ | |@LB@5'-CAG...CUAUC UUAUU C GUGUU...CUG-3'@LB@ GACGUCA AGGCA UGGC@LB@ |||:||| |:||| ||||@LB@ CUGUAGU UUCGU ACCG@LB@3'-UUU...UACCC UUCUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -22.2624 kcal/mol@LB@Unfolding Energy - mRNA 6.77205 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 254 -- 275@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 16 -- 22@LB@ |
34 |
0.001647 |
0.1648 |
b1218 |
chaC |
-13.74 |
0.054411 |
171 -- 189 |
1 -- 17 |
cation transport regulator |
|
_____________170_________________190\n_____________|___________________|\n5'-AUA...UGUCG________UAU________GGAAG...CGC-3'\n______________CAGGGAAG___GCAGUGGC\n______________||::|||:___||||||||\n______________GUUUCUUU___CGUCACCG\n3'-UUU...CUGUA________U__________-5'\n_____________|__________________|\n_____________18_________________1\n |
183 -- 189 |
1 -- 7 |
-23.3292 kcal/mol |
8.15416 kcal/mol |
1.43853 kcal/mol |
170 190@LB@ | |@LB@5'-AUA...UGUCG UAU GGAAG...CGC-3'@LB@ CAGGGAAG GCAGUGGC@LB@ ||::|||: ||||||||@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.74 kcal/mol@LB@Hybridization Energy -23.3292 kcal/mol@LB@Unfolding Energy - mRNA 8.15416 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 171 -- 189@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 1 -- 7@LB@ |
36 |
0.001784 |
0.1648 |
b0785 |
moaE |
-14.28 |
0.040953 |
241 -- 264 |
1 -- 21 |
molybdopterin synthase large subunit |
|
_____________240______________________265\n_____________|________________________|\n5'-AGA...GUUCA____A___________CCC_____UGGCG...CCU-3'\n______________GCGU_GGAGAAGAGUA___GUGGC\n______________:|:|_::||||:||:|___|||||\n______________UGUA_UUUCUUUUCGU___CACCG\n3'-UUU...ACCCC____G___________________-5'\n_____________|_______________________|\n_____________22______________________1\n |
250 -- 256 |
6 -- 12 |
-21.7367 kcal/mol |
5.94077 kcal/mol |
1.51103 kcal/mol |
240 265@LB@ | |@LB@5'-AGA...GUUCA A CCC UGGCG...CCU-3'@LB@ GCGU GGAGAAGAGUA GUGGC@LB@ :|:| ::||||:||:| |||||@LB@ UGUA UUUCUUUUCGU CACCG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -21.7367 kcal/mol@LB@Unfolding Energy - mRNA 5.94077 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 241 -- 264@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 6 -- 12@LB@ |
37 |
0.001785 |
0.1648 |
b3933 |
ftsN |
-15.64 |
0.019200 |
24 -- 52 |
1 -- 29 |
essential cell division protein |
|
_____________23______________________________53\n_____________|_______________________________|\n5'-AGC...UGAUC_____CA______A__CGUU___________UCUCG...CUC-3'\n______________AAAUG__GGGGCA_CA______GGCAGUGGC\n______________|||||__|||:||_||______:||||||||\n______________UUUAC__CCCUGU_GU______UCGUCACCG\n3'-UUU...GGUGU_____________A__UUCUUU_________-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
46 -- 52 |
1 -- 7 |
-29.0551 kcal/mol |
10.8938 kcal/mol |
2.51907 kcal/mol |
23 53@LB@ | |@LB@5'-AGC...UGAUC CA A CGUU UCUCG...CUC-3'@LB@ AAAUG GGGGCA CA GGCAGUGGC@LB@ ||||| |||:|| || :||||||||@LB@ UUUAC CCCUGU GU UCGUCACCG@LB@3'-UUU...GGUGU A UUCUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.64 kcal/mol@LB@Hybridization Energy -29.0551 kcal/mol@LB@Unfolding Energy - mRNA 10.8938 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 24 -- 52@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
38 |
0.001836 |
0.1648 |
b3188 |
sfsB |
-13.60 |
0.058336 |
253 -- 274 |
1 -- 32 |
malPQ operon transcriptional activator |
|
_____________252______________________________275\n_____________|________________________________|\n5'-CGG...UUUGC______A___A_____________________GGCGG...UGA-3'\n______________GCAAGA_GGG_ACGUCAA__________UGGC\n______________:|||:|_|||_||:||||__________||||\n______________UGUUUU_CCC_UGUAGUU__________ACCG\n3'-UUU...CGAGG______A___C_______UCUUUUCGUC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
264 -- 270 |
15 -- 21 |
-21.5209 kcal/mol |
5.38314 kcal/mol |
2.53929 kcal/mol |
252 275@LB@ | |@LB@5'-CGG...UUUGC A A GGCGG...UGA-3'@LB@ GCAAGA GGG ACGUCAA UGGC@LB@ :|||:| ||| ||:|||| ||||@LB@ UGUUUU CCC UGUAGUU ACCG@LB@3'-UUU...CGAGG A C UCUUUUCGUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -21.5209 kcal/mol@LB@Unfolding Energy - mRNA 5.38314 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 253 -- 274@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 15 -- 21@LB@ |
39 |
0.001912 |
0.1648 |
b2532 |
trmJ |
-14.54 |
0.035636 |
97 -- 121 |
1 -- 23 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________96________________________122\n_____________|_________________________|\n5'-CGU...UCACU_____________C__G_AAAC___GCAGA...UGU-3'\n______________GGAUGUUAAAGAA_GG_A____GGC\n______________|||::|:||||||_:|_|____|||\n______________CCUGUAGUUUCUU_UC_U____CCG\n3'-UUU...UUACC_____________U__G_CA_____-5'\n_____________|________________________|\n_____________24_______________________1\n |
103 -- 109 |
11 -- 17 |
-19.8008 kcal/mol |
3.67656 kcal/mol |
1.57928 kcal/mol |
96 122@LB@ | |@LB@5'-CGU...UCACU C G AAAC GCAGA...UGU-3'@LB@ GGAUGUUAAAGAA GG A GGC@LB@ |||::|:|||||| :| | |||@LB@ CCUGUAGUUUCUU UC U CCG@LB@3'-UUU...UUACC U G CA -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -19.8008 kcal/mol@LB@Unfolding Energy - mRNA 3.67656 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 97 -- 121@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 11 -- 17@LB@ |
40 |
0.001973 |
0.1648 |
b1823 |
cspC |
-10.89 |
0.196769 |
199 -- 231 |
1 -- 29 |
stress protein member of the CspA-family |
|
_____________198_______________________________232\n_____________|_________________________________|\n5'-UAU...UUUUC______CAA_G________UC____UA______UCAAC...UCU-3'\n______________AAAUGG___A_AUUAAAGG__AGGU__AGUGGU\n______________||||||___|_||:||||:__|:|:__|||||:\n______________UUUACC___U_UAGUUUCU__UUCG__UCACCG\n3'-UUU...GGUGU______CC__G________U_____________-5'\n_____________|________________________________|\n_____________30_______________________________1\n |
210 -- 216 |
13 -- 19 |
-20.1954 kcal/mol |
6.78842 kcal/mol |
2.51907 kcal/mol |
198 232@LB@ | |@LB@5'-UAU...UUUUC CAA G UC UA UCAAC...UCU-3'@LB@ AAAUGG A AUUAAAGG AGGU AGUGGU@LB@ |||||| | ||:||||: |:|: |||||:@LB@ UUUACC U UAGUUUCU UUCG UCACCG@LB@3'-UUU...GGUGU CC G U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -20.1954 kcal/mol@LB@Unfolding Energy - mRNA 6.78842 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 199 -- 231@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 13 -- 19@LB@ |
41 |
0.002071 |
0.1648 |
b0992 |
yccM |
-9.88 |
0.287125 |
161 -- 167 |
1 -- 7 |
putative 4Fe-4S membrane protein |
|
_____________160_____168\n_____________|_______|\n5'-AUC...UAGAA_______AUUUG...AAG-3'\n______________UAGUGGC\n______________:||||||\n______________GUCACCG\n3'-UUU...UUUUC_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-11.7646 kcal/mol |
0.660682 kcal/mol |
1.22779 kcal/mol |
160 168@LB@ | |@LB@5'-AUC...UAGAA AUUUG...AAG-3'@LB@ UAGUGGC@LB@ :||||||@LB@ GUCACCG@LB@3'-UUU...UUUUC -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -11.7646 kcal/mol@LB@Unfolding Energy - mRNA 0.660682 kcal/mol@LB@Unfolding Energy - sRNA 1.22779 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
43 |
0.00215 |
0.1648 |
b4268 |
idnK |
-13.73 |
0.054596 |
180 -- 268 |
1 -- 79 |
D-gluconate kinase thermosensitive |
b3437 |
_____________179______________________________________________________________________________________________269\n_____________|________________________________________________________________________________________________|\n5'-AGG...AGGUA___U______GGA______________________U_AAAGCUUUAUU_________GU____G_______UAAA_______UUGGU____A____UGCCG...AUG-3'\n______________AGA_GAUUCA___GAUUUU______AAAUGGCGGG_G___________UUGAUGGGC__UUCA_GGAGUGG____ACAUUAA_____AGCA__GGU\n______________|:|_:|::||___:|::||______||||||||||_|___________|||||||||__|:||_::|:|||____||||:||_____||||__||:\n______________UUU_UUGGGU___UUGGAA______UUUACCGCCC_C___________AACUACCCG__AGGU_UUUUACC____UGUAGUU_____UCGU__CCG\n___________3'-___U______AG_______CUUGGC______________________________________G_______CC_________UCUUU____CA___-5'\n______________|______________________________________________________________________________________________|\n______________79_____________________________________________________________________________________________1\n |
249 -- 255 |
15 -- 21 |
-57.0668 kcal/mol |
16.9855 kcal/mol |
26.3515 kcal/mol |
179 269@LB@ | |@LB@5'-AGG...AGGUA U GGA U AAAGCUUUAUU GU G UAAA UUGGU A UGCCG...AUG-3'@LB@ AGA GAUUCA GAUUUU AAAUGGCGGG G UUGAUGGGC UUCA GGAGUGG ACAUUAA AGCA GGU@LB@ |:| :|::|| :|::|| |||||||||| | ||||||||| |:|| ::|:||| ||||:|| |||| ||:@LB@ UUU UUGGGU UUGGAA UUUACCGCCC C AACUACCCG AGGU UUUUACC UGUAGUU UCGU CCG@LB@ 3'- U AG CUUGGC G CC UCUUU CA -5'@LB@ | |@LB@ 79 1@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -57.0668 kcal/mol@LB@Unfolding Energy - mRNA 16.9855 kcal/mol@LB@Unfolding Energy - sRNA 26.3515 kcal/mol@LB@@LB@Position - mRNA 180 -- 268@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 15 -- 21@LB@ |
45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |