| 26 |
0.001009 |
0.1361 |
b3731 |
atpC |
-14.21 |
0.042680 |
144 -- 160 |
2 -- 20 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________143_________________161\n_____________|___________________|\n5'-UCC...GGUUC______________U____AAAAA...UGG-3'\n______________CAUCGAAGA__AGC_GUGG\n______________||||:||||__|||_||||\n______________GUAGUUUCU__UCG_CACC\n3'-UUU...CCCCU_________UU___U____G-5'\n_____________|___________________|\n_____________21__________________1\n |
146 -- 152 |
12 -- 18 |
-19.7705 kcal/mol |
4.1055 kcal/mol |
1.45839 kcal/mol |
143 161@LB@ | |@LB@5'-UCC...GGUUC U AAAAA...UGG-3'@LB@ CAUCGAAGA AGC GUGG@LB@ ||||:|||| ||| ||||@LB@ GUAGUUUCU UCG CACC@LB@3'-UUU...CCCCU UU U G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.21 kcal/mol@LB@Hybridization Energy -19.7705 kcal/mol@LB@Unfolding Energy - mRNA 4.1055 kcal/mol@LB@Unfolding Energy - sRNA 1.45839 kcal/mol@LB@@LB@Position - mRNA 144 -- 160@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 46 |
0.002205 |
0.1648 |
b1662 |
ribC |
-17.71 |
0.005126 |
34 -- 61 |
2 -- 29 |
riboflavin synthase alpha subunit |
|
_____________33_____________________________62\n_____________|______________________________|\n5'-UUU...CGCCU_______CA___A_____A___________GAAAU...UGG-3'\n______________GAAUGGG__GCA__AAAG_AGAAGCAG_GG\n______________:||||||__:||__||||_|:||||||_||\n______________UUUACCC__UGU__UUUC_UUUUCGUC_CC\n3'-UUU...GGUGU_______C____AG_____________A__G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
53 -- 59 |
5 -- 11 |
-25.8778 kcal/mol |
5.65259 kcal/mol |
2.51906 kcal/mol |
33 62@LB@ | |@LB@5'-UUU...CGCCU CA A A GAAAU...UGG-3'@LB@ GAAUGGG GCA AAAG AGAAGCAG GG@LB@ :|||||| :|| |||| |:|||||| ||@LB@ UUUACCC UGU UUUC UUUUCGUC CC@LB@3'-UUU...GGUGU C AG A G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -25.8778 kcal/mol@LB@Unfolding Energy - mRNA 5.65259 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 34 -- 61@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 51 |
0.00253 |
0.1729 |
b0699 |
ybfA |
-18.06 |
0.004001 |
182 -- 204 |
2 -- 32 |
DUF2517 family protein |
|
_____________181_____________________________205\n_____________|_______________________________|\n5'-AUG...UAGAU_______________________________AACUC...GGA-3'\n______________ACAAAA_GGGG______GAGAAAAGUA_UGG\n______________||||||_||||______:|||||||:|_|||\n______________UGUUUU_CCCC______UUCUUUUCGU_ACC\n3'-UUU...CGAGG______A____UGUAGU__________C___G-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
195 -- 201 |
6 -- 12 |
-23.7835 kcal/mol |
3.18782 kcal/mol |
2.53929 kcal/mol |
181 205@LB@ | |@LB@5'-AUG...UAGAU AACUC...GGA-3'@LB@ ACAAAA GGGG GAGAAAAGUA UGG@LB@ |||||| |||| :|||||||:| |||@LB@ UGUUUU CCCC UUCUUUUCGU ACC@LB@3'-UUU...CGAGG A UGUAGU C G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -18.06 kcal/mol@LB@Hybridization Energy -23.7835 kcal/mol@LB@Unfolding Energy - mRNA 3.18782 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 56 |
0.002838 |
0.1778 |
b3371 |
frlB |
-17.11 |
0.007704 |
196 -- 228 |
2 -- 32 |
fructoselysine-6-P-deglycase |
|
_____________195________________________________229\n_____________|__________________________________|\n5'-ACU...AGAAA________UU_________U________CC____ACUUU...ACG-3'\n______________AUAAAAUG__GGAUAUUGA__AAAAGCA__GUGG\n______________|:||||||__|||:||::|__|||||||__||||\n______________UGUUUUAC__CCUGUAGUU__UUUUCGU__CACC\n3'-UUU...CGAGG________C__________UC_____________G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
216 -- 222 |
6 -- 12 |
-25.2618 kcal/mol |
5.61622 kcal/mol |
2.53929 kcal/mol |
195 229@LB@ | |@LB@5'-ACU...AGAAA UU U CC ACUUU...ACG-3'@LB@ AUAAAAUG GGAUAUUGA AAAAGCA GUGG@LB@ |:|||||| |||:||::| ||||||| ||||@LB@ UGUUUUAC CCUGUAGUU UUUUCGU CACC@LB@3'-UUU...CGAGG C UC G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -25.2618 kcal/mol@LB@Unfolding Energy - mRNA 5.61622 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 228@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 84 |
0.005241 |
0.2147 |
b2513 |
yfgM |
-12.13 |
0.116945 |
176 -- 204 |
2 -- 26 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________175___________________________205\n_____________|_____________________________|\n5'-GGC...GUUAC____UUAAGG_________G_CAGC____AAAUU...UUG-3'\n______________UGGG______AAGGAGAAG_A____GUGG\n______________||||______||:||:|||_|____||||\n______________ACCC______UUUCUUUUC_U____CACC\n3'-UUU...GUUUU____CUGUAG_________G_________G-5'\n_____________|_____________________________|\n_____________27____________________________1\n |
188 -- 194 |
8 -- 14 |
-19.1762 kcal/mol |
4.53021 kcal/mol |
2.5184 kcal/mol |
175 205@LB@ | |@LB@5'-GGC...GUUAC UUAAGG G CAGC AAAUU...UUG-3'@LB@ UGGG AAGGAGAAG A GUGG@LB@ |||| ||:||:||| | ||||@LB@ ACCC UUUCUUUUC U CACC@LB@3'-UUU...GUUUU CUGUAG G G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -19.1762 kcal/mol@LB@Unfolding Energy - mRNA 4.53021 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 176 -- 204@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 85 |
0.0054 |
0.2147 |
b4461 |
yfjD |
-16.56 |
0.010978 |
60 -- 89 |
2 -- 27 |
UPF0053 family inner membrane protein |
|
_____________59______________________________90\n_____________|_______________________________|\n5'-GAA...CUGCU___________AUCAU______U________ACGCC...UCA-3'\n______________GUGGGGACAUU_____GAAGGA_GGC_GUGG\n______________:|||||||||:_____:|||:|_:||_||||\n______________UACCCCUGUAG_____UUUCUU_UCG_CACC\n3'-UUU...UGUUU______________________U___U____G-5'\n_____________|_______________________________|\n_____________28______________________________1\n |
64 -- 70 |
17 -- 23 |
-31.7913 kcal/mol |
12.7137 kcal/mol |
2.51866 kcal/mol |
59 90@LB@ | |@LB@5'-GAA...CUGCU AUCAU U ACGCC...UCA-3'@LB@ GUGGGGACAUU GAAGGA GGC GUGG@LB@ :|||||||||: :|||:| :|| ||||@LB@ UACCCCUGUAG UUUCUU UCG CACC@LB@3'-UUU...UGUUU U U G-5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -31.7913 kcal/mol@LB@Unfolding Energy - mRNA 12.7137 kcal/mol@LB@Unfolding Energy - sRNA 2.51866 kcal/mol@LB@@LB@Position - mRNA 60 -- 89@LB@Position - sRNA 2 -- 27@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 91 |
0.005641 |
0.2147 |
b3956 |
ppc |
-14.82 |
0.030673 |
242 -- 282 |
2 -- 37 |
phosphoenolpyruvate carboxylase |
|
_____________241_________________________________________283\n_____________|___________________________________________|\n5'-CUU...AGUAU____G________CU____GAAAC_________U_____U___GAGAA...AAC-3'\n______________GCUC_GCAAAGUG__GGGA_____CAUCAAGGA___GCG_UGG\n______________||||_:||||:||__||||_____||||||:||___||:_|||\n______________CGAG_UGUUUUAC__CCCU_____GUAGUUUCU___CGU_ACC\n3'-UUU...CUACC____G____________________________UUU___C___G-5'\n_____________|___________________________________________|\n_____________38__________________________________________1\n |
268 -- 274 |
12 -- 18 |
-37.6415 kcal/mol |
13.2441 kcal/mol |
9.57751 kcal/mol |
241 283@LB@ | |@LB@5'-CUU...AGUAU G CU GAAAC U U GAGAA...AAC-3'@LB@ GCUC GCAAAGUG GGGA CAUCAAGGA GCG UGG@LB@ |||| :||||:|| |||| ||||||:|| ||: |||@LB@ CGAG UGUUUUAC CCCU GUAGUUUCU CGU ACC@LB@3'-UUU...CUACC G UUU C G-5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -14.82 kcal/mol@LB@Hybridization Energy -37.6415 kcal/mol@LB@Unfolding Energy - mRNA 13.2441 kcal/mol@LB@Unfolding Energy - sRNA 9.57751 kcal/mol@LB@@LB@Position - mRNA 242 -- 282@LB@Position - sRNA 2 -- 37@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 104 |
0.006761 |
0.2281 |
b1671 |
ydhX |
-13.25 |
0.069212 |
145 -- 167 |
2 -- 25 |
putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
b4072 |
_____________144_______________________168\n_____________|_________________________|\n5'-CAC...UUUCA___A_______U___U_________ACAGU...AGG-3'\n______________GGG_GAUGUCA_GGA__AG_GGUGG\n______________|||_||::|||_:||__||_:||||\n______________CCC_CUGUAGU_UCU__UC_UCACC\n3'-UUU...UUUUA___________U___UU__G_____G-5'\n_____________|_________________________|\n_____________26________________________1\n |
149 -- 155 |
16 -- 22 |
-23.0825 kcal/mol |
7.31216 kcal/mol |
2.51746 kcal/mol |
144 168@LB@ | |@LB@5'-CAC...UUUCA A U U ACAGU...AGG-3'@LB@ GGG GAUGUCA GGA AG GGUGG@LB@ ||| ||::||| :|| || :||||@LB@ CCC CUGUAGU UCU UC UCACC@LB@3'-UUU...UUUUA U UU G G-5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.0825 kcal/mol@LB@Unfolding Energy - mRNA 7.31216 kcal/mol@LB@Unfolding Energy - sRNA 2.51746 kcal/mol@LB@@LB@Position - mRNA 145 -- 167@LB@Position - sRNA 2 -- 25@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 105 |
0.007004 |
0.2333 |
b4034 |
malE |
-12.62 |
0.093531 |
92 -- 123 |
2 -- 32 |
maltose transporter subunit |
|
_____________91_________________________________124\n_____________|__________________________________|\n5'-AGG...ACAAA____C_________________C___G__GA___AAAGA...UGG-3'\n______________GCGA_GGUGGGG_CGU_AGGGG_AAG_AG__UGG\n______________:|:|_::|||||_|:|_|::|:_|||_||__|||\n______________UGUU_UUACCCC_GUA_UUUCU_UUC_UC__ACC\n3'-UUU...CGAGG____________U___G_____U___G_______G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
97 -- 103 |
22 -- 28 |
-24.1065 kcal/mol |
8.94734 kcal/mol |
2.53929 kcal/mol |
91 124@LB@ | |@LB@5'-AGG...ACAAA C C G GA AAAGA...UGG-3'@LB@ GCGA GGUGGGG CGU AGGGG AAG AG UGG@LB@ :|:| ::||||| |:| |::|: ||| || |||@LB@ UGUU UUACCCC GUA UUUCU UUC UC ACC@LB@3'-UUU...CGAGG U G U G G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -24.1065 kcal/mol@LB@Unfolding Energy - mRNA 8.94734 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 92 -- 123@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 112 |
0.007494 |
0.2348 |
b2529 |
iscU |
-11.51 |
0.152972 |
152 -- 183 |
2 -- 33 |
iron-sulfur cluster assembly scaffold protein |
|
_____________151______________________________184\n_____________|________________________________|\n5'-UGG...AACAG___C_______CU_____UUAAUC____UC__AAUCA...GGG-3'\n______________CAU_GAAUGGG__CAUCA______GGUA__GG\n______________||:_:||||||__|||||______:|:|__||\n______________GUG_UUUACCC__GUAGU______UCGU__CC\n3'-UUU...CCGAG___U_______CU_____UUCUUU____CA__G-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
156 -- 162 |
23 -- 29 |
-21.7 kcal/mol |
7.11537 kcal/mol |
3.07861 kcal/mol |
151 184@LB@ | |@LB@5'-UGG...AACAG C CU UUAAUC UC AAUCA...GGG-3'@LB@ CAU GAAUGGG CAUCA GGUA GG@LB@ ||: :|||||| ||||| :|:| ||@LB@ GUG UUUACCC GUAGU UCGU CC@LB@3'-UUU...CCGAG U CU UUCUUU CA G-5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 7.11537 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 152 -- 183@LB@Position - sRNA 2 -- 33@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 23 -- 29@LB@ |
