| 162 |
0.012 |
0.2504 |
b2079 |
baeR |
-15.58 |
0.019969 |
182 -- 201 |
6 -- 24 |
response regulator in two-component regulatory system with BaeS |
|
_____________181__________________202\n_____________|____________________|\n5'-CAG...GGAAC_____UUA____________UGACC...CGA-3'\n______________GGGAU___CAGAGAGAAGUA\n______________||||:___||:|||:|||:|\n______________CCCUG___GUUUCUUUUCGU\n3'-UUU...UUUAC_____UA_____________CACCG-5'\n_____________|____________________|\n_____________25___________________5\n |
195 -- 201 |
6 -- 12 |
-20.602 kcal/mol |
4.32458 kcal/mol |
0.702143 kcal/mol |
181 202@LB@ | |@LB@5'-CAG...GGAAC UUA UGACC...CGA-3'@LB@ GGGAU CAGAGAGAAGUA@LB@ ||||: ||:|||:|||:|@LB@ CCCUG GUUUCUUUUCGU@LB@3'-UUU...UUUAC UA CACCG-5'@LB@ | |@LB@ 25 5@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -20.602 kcal/mol@LB@Unfolding Energy - mRNA 4.32458 kcal/mol@LB@Unfolding Energy - sRNA 0.702143 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 6 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 168 |
0.01219 |
0.2504 |
b1830 |
prc |
-10.01 |
0.273454 |
1 -- 12 |
6 -- 17 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
______________1___________13\n______________|___________|\n___________5'-_______C____CACCC...CGG-3'\n______________CGAAGAA_AGCA\n______________|:|||||_||||\n______________GUUUCUU_UCGU\n3'-UUU...CUGUA_______U____CACCG-5'\n_____________|____________|\n_____________18___________5\n |
1 -- 7 |
11 -- 17 |
-11.3077 kcal/mol |
0.751361 kcal/mol |
0.542636 kcal/mol |
1 13@LB@ | |@LB@ 5'- C CACCC...CGG-3'@LB@ CGAAGAA AGCA@LB@ |:||||| ||||@LB@ GUUUCUU UCGU@LB@3'-UUU...CUGUA U CACCG-5'@LB@ | |@LB@ 18 5@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -11.3077 kcal/mol@LB@Unfolding Energy - mRNA 0.751361 kcal/mol@LB@Unfolding Energy - sRNA 0.542636 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 6 -- 17@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 190 |
0.01401 |
0.2529 |
b2478 |
dapA |
-10.08 |
0.266807 |
73 -- 98 |
6 -- 25 |
dihydrodipicolinate synthase |
|
_____________72_________________________99\n_____________|__________________________|\n5'-GGC...UUUAA____UGA____UUCUU__________UAAAA...CCA-3'\n______________GGGG___GUUG_____AAGGAAAGCA\n______________||||___:|::_____|||:||||||\n______________CCCC___UAGU_____UUCUUUUCGU\n3'-UUU...UUUUA____UG____________________CACCG-5'\n_____________|__________________________|\n_____________26_________________________5\n |
92 -- 98 |
6 -- 12 |
-17.2074 kcal/mol |
6.41889 kcal/mol |
0.70636 kcal/mol |
72 99@LB@ | |@LB@5'-GGC...UUUAA UGA UUCUU UAAAA...CCA-3'@LB@ GGGG GUUG AAGGAAAGCA@LB@ |||| :|:: |||:||||||@LB@ CCCC UAGU UUCUUUUCGU@LB@3'-UUU...UUUUA UG CACCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -17.2074 kcal/mol@LB@Unfolding Energy - mRNA 6.41889 kcal/mol@LB@Unfolding Energy - sRNA 0.70636 kcal/mol@LB@@LB@Position - mRNA 73 -- 98@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 200 |
0.01506 |
0.259 |
b0404 |
acpH |
-14.03 |
0.046767 |
57 -- 80 |
6 -- 28 |
acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
|
_____________56________________________81\n_____________|_________________________|\n5'-GCC...GGGAU______CA_________UUC_____AUUCA...GUU-3'\n______________AGUGGG___AUCAGGGA___GGGCA\n______________|:||||___||||::||___::|||\n______________UUACCC___UAGUUUCU___UUCGU\n3'-UUU...GUGUU______CUG________U_______CACCG-5'\n_____________|_________________________|\n_____________29________________________5\n |
66 -- 72 |
12 -- 18 |
-19.5231 kcal/mol |
4.78501 kcal/mol |
0.706454 kcal/mol |
56 81@LB@ | |@LB@5'-GCC...GGGAU CA UUC AUUCA...GUU-3'@LB@ AGUGGG AUCAGGGA GGGCA@LB@ |:|||| ||||::|| ::|||@LB@ UUACCC UAGUUUCU UUCGU@LB@3'-UUU...GUGUU CUG U CACCG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -19.5231 kcal/mol@LB@Unfolding Energy - mRNA 4.78501 kcal/mol@LB@Unfolding Energy - sRNA 0.706454 kcal/mol@LB@@LB@Position - mRNA 57 -- 80@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 35 |
0.00168 |
0.1648 |
b2231 |
gyrA |
-15.33 |
0.023033 |
230 -- 249 |
7 -- 25 |
DNA gyrase (type II topoisomerase) subunit A |
|
_____________229__________________250\n_____________|____________________|\n5'-AGC...ACACC__UCA_______________UGAAG...CGC-3'\n______________GG___ACAUUGAGGAAGAGC\n______________||___||||::|:|||:|||\n______________CC___UGUAGUUUCUUUUCG\n3'-UUU...UUUUA__CC________________UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
243 -- 249 |
7 -- 13 |
-19.3394 kcal/mol |
3.30418 kcal/mol |
0.70626 kcal/mol |
229 250@LB@ | |@LB@5'-AGC...ACACC UCA UGAAG...CGC-3'@LB@ GG ACAUUGAGGAAGAGC@LB@ || ||||::|:|||:|||@LB@ CC UGUAGUUUCUUUUCG@LB@3'-UUU...UUUUA CC UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -15.33 kcal/mol@LB@Hybridization Energy -19.3394 kcal/mol@LB@Unfolding Energy - mRNA 3.30418 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 230 -- 249@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 67 |
0.003548 |
0.1858 |
b4412 |
hokC |
-18.22 |
0.003564 |
16 -- 36 |
7 -- 32 |
toxic membrane protein small |
b1562 b0018 |
_____________15_________________________37\n_____________|__________________________|\n5'-AUU...AUAAA__________________________GAUAU...ACA-3'\n______________ACAAAAUGGG____UUAAAGAGA_GC\n______________||||||||||____|:|||||:|_||\n______________UGUUUUACCC____AGUUUCUUU_CG\n3'-UUU...CGAGG__________CUGU_________U__UCACCG-5'\n_____________|__________________________|\n_____________33_________________________6\n |
28 -- 34 |
10 -- 16 |
-22.2189 kcal/mol |
1.46836 kcal/mol |
2.53437 kcal/mol |
15 37@LB@ | |@LB@5'-AUU...AUAAA GAUAU...ACA-3'@LB@ ACAAAAUGGG UUAAAGAGA GC@LB@ |||||||||| |:|||||:| ||@LB@ UGUUUUACCC AGUUUCUUU CG@LB@3'-UUU...CGAGG CUGU U UCACCG-5'@LB@ | |@LB@ 33 6@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -22.2189 kcal/mol@LB@Unfolding Energy - mRNA 1.46836 kcal/mol@LB@Unfolding Energy - sRNA 2.53437 kcal/mol@LB@@LB@Position - mRNA 16 -- 36@LB@Position - sRNA 7 -- 32@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 73 |
0.004089 |
0.1966 |
b3857 |
mobA |
-16.43 |
0.011914 |
256 -- 282 |
7 -- 29 |
molybdopterin-guanine dinucleotide synthase |
|
_____________255_________________________283\n_____________|___________________________|\n5'-UCC...CAGAC_______C_____AGA_______UU__UUGAA...AAC-3'\n______________GAAUGGG_GGCGU___UAAAGGA__GC\n______________:||||||_|:|:|___:||||:|__||\n______________UUUACCC_CUGUA___GUUUCUU__CG\n3'-UUU...GGUGU_______________________UU__UCACCG-5'\n_____________|___________________________|\n_____________30__________________________6\n |
272 -- 278 |
11 -- 17 |
-21.4093 kcal/mol |
4.27411 kcal/mol |
0.706428 kcal/mol |
255 283@LB@ | |@LB@5'-UCC...CAGAC C AGA UU UUGAA...AAC-3'@LB@ GAAUGGG GGCGU UAAAGGA GC@LB@ :|||||| |:|:| :||||:| ||@LB@ UUUACCC CUGUA GUUUCUU CG@LB@3'-UUU...GGUGU UU UCACCG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -21.4093 kcal/mol@LB@Unfolding Energy - mRNA 4.27411 kcal/mol@LB@Unfolding Energy - sRNA 0.706428 kcal/mol@LB@@LB@Position - mRNA 256 -- 282@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 81 |
0.004938 |
0.2139 |
b0115 |
aceF |
-13.95 |
0.048783 |
266 -- 289 |
7 -- 31 |
pyruvate dehydrogenase dihydrolipoyltransacetylase component E2 |
|
_____________265_________________________290\n_____________|___________________________|\n5'-GAU...CUGGU_________C__________UU_____CGAAC...CGC-3'\n______________CAAAGUGGG_GACA___AAG__GAAGC\n______________||||:||||_||||___|||__:||||\n______________GUUUUACCC_CUGU___UUC__UUUCG\n3'-UUU...GAGGU______________AGU___U______UCACCG-5'\n_____________|___________________________|\n_____________32__________________________6\n |
268 -- 274 |
23 -- 29 |
-21.1287 kcal/mol |
4.65658 kcal/mol |
2.52208 kcal/mol |
265 290@LB@ | |@LB@5'-GAU...CUGGU C UU CGAAC...CGC-3'@LB@ CAAAGUGGG GACA AAG GAAGC@LB@ ||||:|||| |||| ||| :||||@LB@ GUUUUACCC CUGU UUC UUUCG@LB@3'-UUU...GAGGU AGU U UCACCG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -21.1287 kcal/mol@LB@Unfolding Energy - mRNA 4.65658 kcal/mol@LB@Unfolding Energy - sRNA 2.52208 kcal/mol@LB@@LB@Position - mRNA 266 -- 289@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 92 |
0.005693 |
0.2147 |
b2099 |
yegU |
-12.49 |
0.099484 |
183 -- 197 |
7 -- 22 |
ADP-ribosylglycohydrolase family protein |
|
_____________182______________198\n_____________|________________|\n5'-GUG...GCGUU________________UAAAU...CAC-3'\n______________GACA_CAAGGGGAAGU\n______________||||_|||:|::|||:\n______________CUGU_GUUUCUUUUCG\n3'-UUU...UACCC____A___________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
191 -- 197 |
7 -- 13 |
-15.6094 kcal/mol |
2.53245 kcal/mol |
0.590875 kcal/mol |
182 198@LB@ | |@LB@5'-GUG...GCGUU UAAAU...CAC-3'@LB@ GACA CAAGGGGAAGU@LB@ |||| |||:|::|||:@LB@ CUGU GUUUCUUUUCG@LB@3'-UUU...UACCC A UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -15.6094 kcal/mol@LB@Unfolding Energy - mRNA 2.53245 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 103 |
0.006657 |
0.2268 |
b3617 |
kbl |
-13.19 |
0.071337 |
258 -- 276 |
7 -- 25 |
glycine C-acetyltransferase |
|
_____________257_________________277\n_____________|___________________|\n5'-UUU...CGGAA___UUGU____________GCAUU...AAG-3'\n______________GGG____UUAAAGAAGAGC\n______________|||____|:||||||:|||\n______________CCC____AGUUUCUUUUCG\n3'-UUU...UUUUA___CUGU____________UCACCG-5'\n_____________|___________________|\n_____________26__________________6\n |
270 -- 276 |
7 -- 13 |
-19.594 kcal/mol |
5.69693 kcal/mol |
0.70626 kcal/mol |
257 277@LB@ | |@LB@5'-UUU...CGGAA UUGU GCAUU...AAG-3'@LB@ GGG UUAAAGAAGAGC@LB@ ||| |:||||||:|||@LB@ CCC AGUUUCUUUUCG@LB@3'-UUU...UUUUA CUGU UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -19.594 kcal/mol@LB@Unfolding Energy - mRNA 5.69693 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 258 -- 276@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
