21 |
0.0001601 |
0.02641 |
b2344 |
fadL |
-13.31 |
0.003531 |
80 -- 135 |
1 -- 58 |
long-chain fatty acid outer membrane transporter |
|
_____________79_________________________________________________________________136\n_____________|__________________________________________________________________|\n5'-UCC...AGCUG______CCUA___UCUCGCCACU________UUUCU____________________A_________ACUUC...UUU-3'\n______________GUCCGA____UAC___________GGUCUGA_____AAGAUG________UACCUC_G_ACCCUAC\n______________:|||||____|||___________|||||||_____|||||:________||||||_|_|||||||\n______________UAGGCU____AUG___________CCAGACU_____UUCUAU________AUGGAG_C_UGGGAUG\n3'-AUU...CGGUU______A______CACUUCAUUUU__________________CUUGUAGA______A_A_______-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
129 -- 135 |
1 -- 7 |
-38.7471 kcal/mol |
12.7593 kcal/mol |
12.7027 kcal/mol |
79 136@LB@ | |@LB@5'-UCC...AGCUG CCUA UCUCGCCACU UUUCU A ACUUC...UUU-3'@LB@ GUCCGA UAC GGUCUGA AAGAUG UACCUC G ACCCUAC@LB@ :||||| ||| ||||||| |||||: |||||| | |||||||@LB@ UAGGCU AUG CCAGACU UUCUAU AUGGAG C UGGGAUG@LB@3'-AUU...CGGUU A CACUUCAUUUU CUUGUAGA A A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -38.7471 kcal/mol@LB@Unfolding Energy - mRNA 12.7593 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 80 -- 135@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 1 -- 7@LB@ |
22 |
0.0001652 |
0.02641 |
b3566 |
xylF |
-9.94 |
0.047349 |
202 -- 240 |
1 -- 33 |
D-xylose transporter subunit |
|
_____________201_____________________________________241\n_____________|_______________________________________|\n5'-CGA...CACCA_____AUAA________C__CUCAC______C____C__UCCUG...AUG-3'\n______________UGAAA____AGAACAUU_UA_____CCUUUG_ACCU_AC\n______________|||||____|||||||:_||_____|||:||_|||:_||\n______________ACUUU____UCUUGUAG_AU_____GGAGAC_UGGG_UG\n3'-AUU...UCCAG_____CUA_________A_____________A____A__-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
212 -- 218 |
18 -- 24 |
-22.447 kcal/mol |
3.48977 kcal/mol |
9.04529 kcal/mol |
201 241@LB@ | |@LB@5'-CGA...CACCA AUAA C CUCAC C C UCCUG...AUG-3'@LB@ UGAAA AGAACAUU UA CCUUUG ACCU AC@LB@ ||||| |||||||: || |||:|| |||: ||@LB@ ACUUU UCUUGUAG AU GGAGAC UGGG UG@LB@3'-AUU...UCCAG CUA A A A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -22.447 kcal/mol@LB@Unfolding Energy - mRNA 3.48977 kcal/mol@LB@Unfolding Energy - sRNA 9.04529 kcal/mol@LB@@LB@Position - mRNA 202 -- 240@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 18 -- 24@LB@ |
23 |
0.0001777 |
0.02687 |
b0774 |
bioA |
-12.72 |
0.005870 |
209 -- 228 |
5 -- 24 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________208___________________229\n_____________|_____________________|\n5'-ACG...ACAAC____G________________AACGC...AAG-3'\n______________GGAC_AUCUUGCCUUUG_ACC\n______________|:||_|||||:|||:||_|||\n______________CUUG_UAGAAUGGAGAC_UGG\n3'-AUU...UCUAU_________________A___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
219 -- 225 |
9 -- 15 |
-24.4474 kcal/mol |
3.74608 kcal/mol |
8.01095 kcal/mol |
208 229@LB@ | |@LB@5'-ACG...ACAAC G AACGC...AAG-3'@LB@ GGAC AUCUUGCCUUUG ACC@LB@ |:|| |||||:|||:|| |||@LB@ CUUG UAGAAUGGAGAC UGG@LB@3'-AUU...UCUAU A GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -24.4474 kcal/mol@LB@Unfolding Energy - mRNA 3.74608 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 9 -- 15@LB@ |
24 |
0.0002009 |
0.02687 |
b1487 |
ddpA |
-9.43 |
0.065911 |
261 -- 269 |
48 -- 56 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________260_______270\n_____________|_________|\n5'-UCA...AUUUC_________CACGC...UGA-3'\n______________CCGGUUGCG\n______________|||:||:||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
263 -- 269 |
48 -- 54 |
-13.2683 kcal/mol |
2.26031 kcal/mol |
1.55919 kcal/mol |
260 270@LB@ | |@LB@5'-UCA...AUUUC CACGC...UGA-3'@LB@ CCGGUUGCG@LB@ |||:||:||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2683 kcal/mol@LB@Unfolding Energy - mRNA 2.26031 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 261 -- 269@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 48 -- 54@LB@ |
25 |
0.0002052 |
0.02687 |
b0885 |
aat |
-14.70 |
0.000956 |
173 -- 191 |
42 -- 59 |
leucyl/phenylalanyl-tRNA-protein transferase |
|
_____________172_________________192\n_____________|___________________|\n5'-CGU...UGAAC_______C___________UUUGC...UUA-3'\n______________GAUCCGA_UUGCGUGGAGU\n______________:||||||_||:||||:|||\n______________UUAGGCU_AAUGCACUUCA\n3'-AUU...UCGGU___________________UUUUC...AUG-5'\n_____________|___________________|\n_____________60__________________41\n |
185 -- 191 |
42 -- 48 |
-23.9715 kcal/mol |
6.00825 kcal/mol |
3.27976 kcal/mol |
172 192@LB@ | |@LB@5'-CGU...UGAAC C UUUGC...UUA-3'@LB@ GAUCCGA UUGCGUGGAGU@LB@ :|||||| ||:||||:|||@LB@ UUAGGCU AAUGCACUUCA@LB@3'-AUU...UCGGU UUUUC...AUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -23.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.00825 kcal/mol@LB@Unfolding Energy - sRNA 3.27976 kcal/mol@LB@@LB@Position - mRNA 173 -- 191@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
27 |
0.0002115 |
0.02687 |
b2607 |
trmD |
-14.32 |
0.001383 |
229 -- 258 |
48 -- 75 |
tRNA m(1)G37 methyltransferase SAM-dependent |
|
_____________228____________________________259\n_____________|______________________________|\n5'-UCG...GUUUC___________C__G___U_A_________GGGUA...UCC-3'\n______________CUGAAAUGUUC_GC_CAA_U_CCGAUUACG\n______________||:||||:|||_||_|||_|_|||||||||\n______________GAUUUUAUAAG_CG_GUU_A_GGCUAAUGC\n3'-AUU...CCGCC___________U______U___________ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
252 -- 258 |
48 -- 54 |
-28.476 kcal/mol |
6.50272 kcal/mol |
7.67232 kcal/mol |
228 259@LB@ | |@LB@5'-UCG...GUUUC C G U A GGGUA...UCC-3'@LB@ CUGAAAUGUUC GC CAA U CCGAUUACG@LB@ ||:||||:||| || ||| | |||||||||@LB@ GAUUUUAUAAG CG GUU A GGCUAAUGC@LB@3'-AUU...CCGCC U U ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -28.476 kcal/mol@LB@Unfolding Energy - mRNA 6.50272 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 229 -- 258@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 48 -- 54@LB@ |
28 |
0.0002139 |
0.02687 |
b4174 |
hflK |
-10.82 |
0.025576 |
125 -- 140 |
42 -- 58 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________124_______________141\n_____________|_________________|\n5'-AGA...GUAGC______A__________CAUAU...GUC-3'\n______________GUCUGA__GCGUGGAGU\n______________:||:||__:||||:|||\n______________UAGGCU__UGCACUUCA\n3'-AUU...CGGUU______AA_________UUUUC...AUG-5'\n_____________|_________________|\n_____________59________________41\n |
134 -- 140 |
42 -- 48 |
-18.0833 kcal/mol |
3.99428 kcal/mol |
3.27972 kcal/mol |
124 141@LB@ | |@LB@5'-AGA...GUAGC A CAUAU...GUC-3'@LB@ GUCUGA GCGUGGAGU@LB@ :||:|| :||||:|||@LB@ UAGGCU UGCACUUCA@LB@3'-AUU...CGGUU AA UUUUC...AUG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -18.0833 kcal/mol@LB@Unfolding Energy - mRNA 3.99428 kcal/mol@LB@Unfolding Energy - sRNA 3.27972 kcal/mol@LB@@LB@Position - mRNA 125 -- 140@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 42 -- 48@LB@ |
29 |
0.0002348 |
0.02849 |
b4015 |
aceA |
-10.12 |
0.041760 |
186 -- 214 |
1 -- 27 |
isocitrate lyase |
|
_____________185____________________________215\n_____________|______________________________|\n5'-UUG...UAACU______________ACA__AAA____G___ACAAC...UGA-3'\n______________AUGGAGCAUCU_GC___UG___ACCC_UAC\n______________||:||:|||||_:|___||___||||_|||\n______________UAUCUUGUAGA_UG___AC___UGGG_AUG\n3'-AUU...CUUUC___________A__GAG__A__________-5'\n_____________|_____________________________|\n_____________28____________________________1\n |
190 -- 196 |
17 -- 23 |
-23.282 kcal/mol |
5.13768 kcal/mol |
8.046 kcal/mol |
185 215@LB@ | |@LB@5'-UUG...UAACU ACA AAA G ACAAC...UGA-3'@LB@ AUGGAGCAUCU GC UG ACCC UAC@LB@ ||:||:||||| :| || |||| |||@LB@ UAUCUUGUAGA UG AC UGGG AUG@LB@3'-AUU...CUUUC A GAG A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -23.282 kcal/mol@LB@Unfolding Energy - mRNA 5.13768 kcal/mol@LB@Unfolding Energy - sRNA 8.046 kcal/mol@LB@@LB@Position - mRNA 186 -- 214@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 17 -- 23@LB@ |
30 |
0.0002612 |
0.03063 |
b3789 |
rffH |
-9.15 |
0.078548 |
244 -- 254 |
48 -- 58 |
glucose-1-phosphate thymidylyltransferase |
|
_____________243_________255\n_____________|___________|\n5'-GGC...AUUGC___________CGCGG...UGA-3'\n______________AUCCGAUUACG\n______________|||||||||||\n______________UAGGCUAAUGC\n3'-AUU...CGGUU___________ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
248 -- 254 |
48 -- 54 |
-15.7126 kcal/mol |
4.98099 kcal/mol |
1.55987 kcal/mol |
243 255@LB@ | |@LB@5'-GGC...AUUGC CGCGG...UGA-3'@LB@ AUCCGAUUACG@LB@ |||||||||||@LB@ UAGGCUAAUGC@LB@3'-AUU...CGGUU ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.7126 kcal/mol@LB@Unfolding Energy - mRNA 4.98099 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 244 -- 254@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |