151 |
0.006118 |
0.1406 |
b1103 |
hinT |
-6.52 |
0.328434 |
216 -- 241 |
45 -- 70 |
purine nucleoside phosphoramidase dadA activator protein |
|
_____________215________________________242\n_____________|__________________________|\n5'-CAA...AAACU_________A_____AUUCGU_____GAUCC...CGC-3'\n______________AUAUUCAGC_AAAUU______CGUGA\n______________|||||||||_||||:______|||||\n______________UAUAAGUCG_UUUAG______GCACU\n3'-AUU...GAUUU_________G_____GCUAAU_____UCAUU...AUG-5'\n_____________|__________________________|\n_____________71_________________________44\n |
218 -- 224 |
62 -- 68 |
-20.3535 kcal/mol |
5.67357 kcal/mol |
8.1779 kcal/mol |
215 242@LB@ | |@LB@5'-CAA...AAACU A AUUCGU GAUCC...CGC-3'@LB@ AUAUUCAGC AAAUU CGUGA@LB@ ||||||||| ||||: |||||@LB@ UAUAAGUCG UUUAG GCACU@LB@3'-AUU...GAUUU G GCUAAU UCAUU...AUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -6.52 kcal/mol@LB@Hybridization Energy -20.3535 kcal/mol@LB@Unfolding Energy - mRNA 5.67357 kcal/mol@LB@Unfolding Energy - sRNA 8.1779 kcal/mol@LB@@LB@Position - mRNA 216 -- 241@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 62 -- 68@LB@ |
152 |
0.006159 |
0.1406 |
b2467 |
nudK |
-9.74 |
0.053801 |
255 -- 261 |
1 -- 7 |
GDP-mannose pyrophosphatase |
|
_____________254_____262\n_____________|_______|\n5'-CAA...AUUUC_______ACAAC...AAG-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
255 -- 261 |
1 -- 7 |
-11.9691 kcal/mol |
0.21022 kcal/mol |
2.03949 kcal/mol |
254 262@LB@ | |@LB@5'-CAA...AUUUC ACAAC...AAG-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -11.9691 kcal/mol@LB@Unfolding Energy - mRNA 0.21022 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
153 |
0.006198 |
0.1406 |
b3459 |
panM |
-8.50 |
0.116540 |
144 -- 151 |
50 -- 57 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________143______152\n_____________|________|\n5'-AAA...AAGCC________AAUUA...UUG-3'\n______________UCCGAUUA\n______________||||||||\n______________AGGCUAAU\n3'-AUU...GGUUU________GCACU...AUG-5'\n_____________|________|\n_____________58_______49\n |
145 -- 151 |
50 -- 56 |
-10.246 kcal/mol |
1.44461 kcal/mol |
0.317388 kcal/mol |
143 152@LB@ | |@LB@5'-AAA...AAGCC AAUUA...UUG-3'@LB@ UCCGAUUA@LB@ ||||||||@LB@ AGGCUAAU@LB@3'-AUU...GGUUU GCACU...AUG-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -10.246 kcal/mol@LB@Unfolding Energy - mRNA 1.44461 kcal/mol@LB@Unfolding Energy - sRNA 0.317388 kcal/mol@LB@@LB@Position - mRNA 144 -- 151@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 50 -- 56@LB@ |
154 |
0.006224 |
0.1406 |
b0882 |
clpA |
-11.36 |
0.017252 |
127 -- 158 |
2 -- 32 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________126______________________________159\n_____________|________________________________|\n5'-UUU...CGCGA______AU_______CAUUG__G_____G___GAAAA...CGC-3'\n______________GGGAGA__GAGCAUC_____CU_UGUAC_CUA\n______________|::|||__||:||||_____||_|||||_|||\n______________CUUUCU__CUUGUAG_____GA_ACAUG_GAU\n3'-AUU...CCAGA______AU_______AAUG___G_____G___G-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
135 -- 141 |
18 -- 24 |
-27.9684 kcal/mol |
7.80814 kcal/mol |
8.82442 kcal/mol |
126 159@LB@ | |@LB@5'-UUU...CGCGA AU CAUUG G G GAAAA...CGC-3'@LB@ GGGAGA GAGCAUC CU UGUAC CUA@LB@ |::||| ||:|||| || ||||| |||@LB@ CUUUCU CUUGUAG GA ACAUG GAU@LB@3'-AUU...CCAGA AU AAUG G G G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -27.9684 kcal/mol@LB@Unfolding Energy - mRNA 7.80814 kcal/mol@LB@Unfolding Energy - sRNA 8.82442 kcal/mol@LB@@LB@Position - mRNA 127 -- 158@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 18 -- 24@LB@ |
155 |
0.00623 |
0.1406 |
b4178 |
nsrR |
-8.53 |
0.114937 |
220 -- 228 |
48 -- 56 |
nitric oxide-sensitive repressor for NO regulon |
|
_____________219_______229\n_____________|_________|\n5'-GGU...UUUCA_________GAUUA...ACG-3'\n______________CUGAUUACG\n______________|:|||||||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
222 -- 228 |
48 -- 54 |
-11.8869 kcal/mol |
1.78283 kcal/mol |
1.55919 kcal/mol |
219 229@LB@ | |@LB@5'-GGU...UUUCA GAUUA...ACG-3'@LB@ CUGAUUACG@LB@ |:|||||||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -8.53 kcal/mol@LB@Hybridization Energy -11.8869 kcal/mol@LB@Unfolding Energy - mRNA 1.78283 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 220 -- 228@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 48 -- 54@LB@ |
156 |
0.006236 |
0.1406 |
b2922 |
yggE |
-5.46 |
0.507768 |
199 -- 207 |
42 -- 50 |
oxidative stress defense protein |
|
_____________198_______208\n_____________|_________|\n5'-GCA...GACUA_________UCAAA...CCG-3'\n______________ACGUGAAGU\n______________|||||||||\n______________UGCACUUCA\n3'-AUU...GCUAA_________UUUUC...AUG-5'\n_____________|_________|\n_____________51________41\n |
201 -- 207 |
42 -- 48 |
-12.7727 kcal/mol |
4.07491 kcal/mol |
3.2504 kcal/mol |
198 208@LB@ | |@LB@5'-GCA...GACUA UCAAA...CCG-3'@LB@ ACGUGAAGU@LB@ |||||||||@LB@ UGCACUUCA@LB@3'-AUU...GCUAA UUUUC...AUG-5'@LB@ | |@LB@ 51 41@LB@@LB@@LB@Energy -5.46 kcal/mol@LB@Hybridization Energy -12.7727 kcal/mol@LB@Unfolding Energy - mRNA 4.07491 kcal/mol@LB@Unfolding Energy - sRNA 3.2504 kcal/mol@LB@@LB@Position - mRNA 199 -- 207@LB@Position - sRNA 42 -- 50@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 42 -- 48@LB@ |
157 |
0.006279 |
0.1407 |
b0312 |
betB |
-8.02 |
0.153308 |
1 -- 12 |
52 -- 63 |
betaine aldehyde dehydrogenase NAD-dependent |
|
______________1___________13\n______________|___________|\n___________5'-____________GAGCG...ACG-3'\n______________GUCGAAUCUGGU\n______________|:|:||||:|:|\n______________CGGUUUAGGCUA\n3'-AUU...UAAGU____________AUGCA...AUG-5'\n_____________|____________|\n_____________64___________51\n |
6 -- 12 |
52 -- 58 |
-15.0997 kcal/mol |
0.969406 kcal/mol |
6.13017 kcal/mol |
1 13@LB@ | |@LB@ 5'- GAGCG...ACG-3'@LB@ GUCGAAUCUGGU@LB@ |:|:||||:|:|@LB@ CGGUUUAGGCUA@LB@3'-AUU...UAAGU AUGCA...AUG-5'@LB@ | |@LB@ 64 51@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -15.0997 kcal/mol@LB@Unfolding Energy - mRNA 0.969406 kcal/mol@LB@Unfolding Energy - sRNA 6.13017 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 52 -- 63@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
158 |
0.00634 |
0.1412 |
b3598 |
yibI |
-10.19 |
0.039756 |
289 -- 298 |
49 -- 58 |
DUF3302 family inner membrane protein |
b3587 |
_____________288________299\n_____________|__________|\n5'-CGU...CCCUU__________CA-3'\n______________AUCUGAUUGC\n______________|||:||||:|\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
292 -- 298 |
49 -- 55 |
-10.9433 kcal/mol |
0.440755 kcal/mol |
0.318367 kcal/mol |
288 299@LB@ | |@LB@5'-CGU...CCCUU CA-3'@LB@ AUCUGAUUGC@LB@ |||:||||:|@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -10.9433 kcal/mol@LB@Unfolding Energy - mRNA 0.440755 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
159 |
0.006413 |
0.1413 |
b4242 |
mgtA |
-7.15 |
0.243258 |
247 -- 262 |
45 -- 58 |
magnesium transporter |
|
_____________246______________263\n_____________|________________|\n5'-GGU...UUCCC________CAU_____UCCAU...UGG-3'\n______________GUCUGGUU___CGUGA\n______________:||:|:||___|||||\n______________UAGGCUAA___GCACU\n3'-AUU...CGGUU________U_______UCAUU...AUG-5'\n_____________|________________|\n_____________59_______________44\n |
248 -- 254 |
51 -- 57 |
-12.639 kcal/mol |
3.2244 kcal/mol |
2.28003 kcal/mol |
246 263@LB@ | |@LB@5'-GGU...UUCCC CAU UCCAU...UGG-3'@LB@ GUCUGGUU CGUGA@LB@ :||:|:|| |||||@LB@ UAGGCUAA GCACU@LB@3'-AUU...CGGUU U UCAUU...AUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -12.639 kcal/mol@LB@Unfolding Energy - mRNA 3.2244 kcal/mol@LB@Unfolding Energy - sRNA 2.28003 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 51 -- 57@LB@ |
160 |
0.006479 |
0.1413 |
b0391 |
yaiE |
-12.00 |
0.010520 |
148 -- 162 |
1 -- 15 |
UPF0345 family protein |
|
_____________147_____________163\n_____________|_______________|\n5'-GAU...CCAGC_______GC______AGUGA...GCG-3'\n______________GCCUCUG__CCCUAU\n______________:||||||__|||||:\n______________UGGAGAC__GGGAUG\n3'-AUU...UAGAA_______AU______-5'\n_____________|______________|\n_____________16_____________1\n |
148 -- 154 |
9 -- 15 |
-21.6181 kcal/mol |
3.81195 kcal/mol |
5.82808 kcal/mol |
147 163@LB@ | |@LB@5'-GAU...CCAGC GC AGUGA...GCG-3'@LB@ GCCUCUG CCCUAU@LB@ :|||||| |||||:@LB@ UGGAGAC GGGAUG@LB@3'-AUU...UAGAA AU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.6181 kcal/mol@LB@Unfolding Energy - mRNA 3.81195 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 9 -- 15@LB@ |