111 |
0.003555 |
0.1127 |
b2938 |
speA |
-9.18 |
0.077057 |
36 -- 48 |
46 -- 58 |
biosynthetic arginine decarboxylase PLP-binding |
|
_____________35____________49\n_____________|_____________|\n5'-GUU...CUUAC_____________CUUAA...GCA-3'\n______________GUUCGGUUAUGUG\n______________:|:||:|||:|||\n______________UAGGCUAAUGCAC\n3'-AUU...CGGUU_____________UUCAU...AUG-5'\n_____________|_____________|\n_____________59____________45\n |
42 -- 48 |
46 -- 52 |
-14.853 kcal/mol |
3.8258 kcal/mol |
1.8625 kcal/mol |
35 49@LB@ | |@LB@5'-GUU...CUUAC CUUAA...GCA-3'@LB@ GUUCGGUUAUGUG@LB@ :|:||:|||:|||@LB@ UAGGCUAAUGCAC@LB@3'-AUU...CGGUU UUCAU...AUG-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -14.853 kcal/mol@LB@Unfolding Energy - mRNA 3.8258 kcal/mol@LB@Unfolding Energy - sRNA 1.8625 kcal/mol@LB@@LB@Position - mRNA 36 -- 48@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 46 -- 52@LB@ |
112 |
0.003594 |
0.1129 |
b3866 |
yihI |
-3.87 |
0.795256 |
171 -- 194 |
53 -- 75 |
activator of Der GTPase |
|
_____________170______________________195\n_____________|________________________|\n5'-GAA...CUAUA_____UAAAA________AGA___ACCAU...GUC-3'\n______________CUGAA_____CGGCUAAA___CGA\n______________||:||_____|:||:|||___|||\n______________GAUUU_____GUCGGUUU___GCU\n3'-AUU...CCGCC_____UAUAA________AG____AAUGC...AUG-5'\n_____________|________________________|\n_____________76_______________________52\n |
181 -- 187 |
59 -- 65 |
-14.4152 kcal/mol |
4.20142 kcal/mol |
6.36326 kcal/mol |
170 195@LB@ | |@LB@5'-GAA...CUAUA UAAAA AGA ACCAU...GUC-3'@LB@ CUGAA CGGCUAAA CGA@LB@ ||:|| |:||:||| |||@LB@ GAUUU GUCGGUUU GCU@LB@3'-AUU...CCGCC UAUAA AG AAUGC...AUG-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -3.87 kcal/mol@LB@Hybridization Energy -14.4152 kcal/mol@LB@Unfolding Energy - mRNA 4.20142 kcal/mol@LB@Unfolding Energy - sRNA 6.36326 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 59 -- 65@LB@ |
113 |
0.003703 |
0.1147 |
b1728 |
ydjM |
-2.69 |
0.937889 |
161 -- 167 |
1 -- 7 |
inner membrane protein regulated by LexA |
|
_____________160_____168\n_____________|_______|\n5'-CGC...UAAAA_______ACUGU...AUA-3'\n______________AUCCUAU\n______________|:||||:\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-7.15055 kcal/mol |
2.44298 kcal/mol |
2.03949 kcal/mol |
160 168@LB@ | |@LB@5'-CGC...UAAAA ACUGU...AUA-3'@LB@ AUCCUAU@LB@ |:||||:@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -2.69 kcal/mol@LB@Hybridization Energy -7.15055 kcal/mol@LB@Unfolding Energy - mRNA 2.44298 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
114 |
0.003723 |
0.1147 |
b2327 |
yfcA |
-8.38 |
0.125082 |
22 -- 29 |
1 -- 8 |
TauE/TSUP family inner membrane protein |
|
_____________21_______30\n_____________|________|\n5'-CAU...UACGU________CGAUA...GUG-3'\n______________UGCCCUGC\n______________|:||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
23 -- 29 |
1 -- 7 |
-12.241 kcal/mol |
1.76759 kcal/mol |
2.11603 kcal/mol |
21 30@LB@ | |@LB@5'-CAU...UACGU CGAUA...GUG-3'@LB@ UGCCCUGC@LB@ |:||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -12.241 kcal/mol@LB@Unfolding Energy - mRNA 1.76759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 1 -- 7@LB@ |
115 |
0.00375 |
0.1147 |
b1057 |
yceJ |
-5.38 |
0.522888 |
37 -- 59 |
1 -- 23 |
putative cytochrome b561 |
|
_____________36_______________________60\n_____________|________________________|\n5'-UGA...CACCA_______C__AUG___A_______UAAAC...UGU-3'\n______________GACAUCU_UG___CUG_ACCC_AC\n______________:||||||_|:___|||_||||_||\n______________UUGUAGA_AU___GAC_UGGG_UG\n3'-AUU...CUAUC__________GGA___A____A__-5'\n_____________|_______________________|\n_____________24______________________1\n |
37 -- 43 |
17 -- 23 |
-17.2281 kcal/mol |
3.85652 kcal/mol |
8.01506 kcal/mol |
36 60@LB@ | |@LB@5'-UGA...CACCA C AUG A UAAAC...UGU-3'@LB@ GACAUCU UG CUG ACCC AC@LB@ :|||||| |: ||| |||| ||@LB@ UUGUAGA AU GAC UGGG UG@LB@3'-AUU...CUAUC GGA A A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -17.2281 kcal/mol@LB@Unfolding Energy - mRNA 3.85652 kcal/mol@LB@Unfolding Energy - sRNA 8.01506 kcal/mol@LB@@LB@Position - mRNA 37 -- 59@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 17 -- 23@LB@ |
116 |
0.003844 |
0.1165 |
b1004 |
wrbA |
-12.42 |
0.007537 |
123 -- 145 |
10 -- 35 |
NAD(P)H:quinone oxidoreductase |
|
_____________122________________________146\n_____________|__________________________|\n5'-UUA...UGCAC__________________________AAAUA...AAG-3'\n______________UCUGAAA___AGGACGUCUUAUCUUU\n______________|||||||___||:||:|||||:||:|\n______________AGACUUU___UCUUGUAGAAUGGAGA\n3'-AUU...UUUCC_______CUA________________CAUGG...AUG-5'\n_____________|__________________________|\n_____________36_________________________9\n |
133 -- 139 |
16 -- 22 |
-25.4666 kcal/mol |
4.32254 kcal/mol |
8.70229 kcal/mol |
122 146@LB@ | |@LB@5'-UUA...UGCAC AAAUA...AAG-3'@LB@ UCUGAAA AGGACGUCUUAUCUUU@LB@ ||||||| ||:||:|||||:||:|@LB@ AGACUUU UCUUGUAGAAUGGAGA@LB@3'-AUU...UUUCC CUA CAUGG...AUG-5'@LB@ | |@LB@ 36 9@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -25.4666 kcal/mol@LB@Unfolding Energy - mRNA 4.32254 kcal/mol@LB@Unfolding Energy - sRNA 8.70229 kcal/mol@LB@@LB@Position - mRNA 123 -- 145@LB@Position - sRNA 10 -- 35@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 16 -- 22@LB@ |
117 |
0.003878 |
0.1165 |
b3078 |
ygjI |
-10.25 |
0.038289 |
174 -- 181 |
1 -- 8 |
putative transporter |
b0899 |
_____________173______182\n_____________|________|\n5'-GGA...ACCGC________UCAUU...UUG-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
175 -- 181 |
1 -- 7 |
-12.7576 kcal/mol |
0.416118 kcal/mol |
2.11603 kcal/mol |
173 182@LB@ | |@LB@5'-GGA...ACCGC UCAUU...UUG-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -12.7576 kcal/mol@LB@Unfolding Energy - mRNA 0.416118 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 174 -- 181@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 1 -- 7@LB@ |
118 |
0.003907 |
0.1165 |
b3827 |
yigM |
-8.32 |
0.129405 |
260 -- 268 |
1 -- 9 |
putative inner membrane EamA-like transporter |
|
_____________259_______269\n_____________|_________|\n5'-GGA...GGCGA_________GGGGC...UGG-3'\n______________GUACCUUGC\n______________|||||:|:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
262 -- 268 |
1 -- 7 |
-12.9582 kcal/mol |
2.53078 kcal/mol |
2.12872 kcal/mol |
259 269@LB@ | |@LB@5'-GGA...GGCGA GGGGC...UGG-3'@LB@ GUACCUUGC@LB@ |||||:|:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -12.9582 kcal/mol@LB@Unfolding Energy - mRNA 2.53078 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 260 -- 268@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 1 -- 7@LB@ |
119 |
0.003968 |
0.1172 |
b2765 |
queD |
-8.07 |
0.149030 |
164 -- 172 |
1 -- 9 |
6-pyruvoyl tetrahydrobiopterin synthase (PTPS) |
|
_____________163_______173\n_____________|_________|\n5'-AAC...UUCCG_________GGCGG...AUU-3'\n______________GUACUCUAC\n______________||||:||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
166 -- 172 |
1 -- 7 |
-12.1088 kcal/mol |
1.92954 kcal/mol |
2.12872 kcal/mol |
163 173@LB@ | |@LB@5'-AAC...UUCCG GGCGG...AUU-3'@LB@ GUACUCUAC@LB@ ||||:||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.1088 kcal/mol@LB@Unfolding Energy - mRNA 1.92954 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 1 -- 7@LB@ |
120 |
0.003999 |
0.1172 |
b2582 |
trxC |
-9.28 |
0.072721 |
206 -- 219 |
4 -- 16 |
thioredoxin 2 |
|
_____________205____________220\n_____________|______________|\n5'-CUC...AUGAA____G_________AUUGU...UUG-3'\n______________UACC_UUUGUACCC\n______________||||_|:|||||||\n______________AUGG_AGACAUGGG\n3'-AUU...GUAGA______________AUG-5'\n_____________|______________|\n_____________17_____________3\n |
213 -- 219 |
4 -- 10 |
-18.1109 kcal/mol |
2.27225 kcal/mol |
6.59015 kcal/mol |
205 220@LB@ | |@LB@5'-CUC...AUGAA G AUUGU...UUG-3'@LB@ UACC UUUGUACCC@LB@ |||| |:|||||||@LB@ AUGG AGACAUGGG@LB@3'-AUU...GUAGA AUG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -18.1109 kcal/mol@LB@Unfolding Energy - mRNA 2.27225 kcal/mol@LB@Unfolding Energy - sRNA 6.59015 kcal/mol@LB@@LB@Position - mRNA 206 -- 219@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 4 -- 10@LB@ |