21 |
0.000482 |
0.08173 |
stm1057 |
pepN |
-18.92 |
0.026522 |
201 -- 244 |
36 -- 81 |
aminopeptidase N |
|
_____________200______________245\n_____________|________________|\n5'-CUU...UUUAU___________C____GCCAA...AAA-3'\n______________GACACAACAGC_ACAA\n______________:||||||||:|_||||\n______________UUGUGUUGUUG_UGUU\n3'-UUU...AACGU________________GUAGU...UCA-5'\n_____________|________________|\n_____________82_______________35\n |
207 -- 213 |
77 -- 83 |
-17.6161 kcal/mol |
1.99149 kcal/mol |
3.56182 kcal/mol |
200 245@LB@ | |@LB@5'-CUU...UUUAU C GCCAA...AAA-3'@LB@ GACACAACAGC ACAA@LB@ :||||||||:| ||||@LB@ UUGUGUUGUUG UGUU@LB@3'-UUU...AACGU GUAGU...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.92 kcal/mol@LB@Hybridization Energy -17.6161 kcal/mol@LB@Unfolding Energy - mRNA 1.99149 kcal/mol@LB@Unfolding Energy - sRNA 3.56182 kcal/mol@LB@@LB@Position - mRNA 201 -- 244@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 77 -- 83@LB@ |
22 |
0.0005859 |
0.08814 |
stm1976 |
fliM |
-14.91 |
0.122150 |
23 -- 60 |
38 -- 69 |
flagellar motor switch protein FliM |
|
_____________22_____________________________________61\n_____________|______________________________________|\n5'-AAA...AAGUG_________CU____UUGUUGUUUU_____________CGCCG...GCG-3'\n______________CGCAGCCGU__GCUG__________CCCGUCAGAAUGC\n______________|:||:||||__||::__________|||:||||||::|\n______________GUGUUGGCA__CGGU__________GGGUAGUCUUGUG\n3'-UUU...UUGUA_________UU____UUUC___________________CGUAA...UCA-5'\n_____________|______________________________________|\n_____________70_____________________________________37\n |
49 -- 55 |
43 -- 49 |
-35.5971 kcal/mol |
10.3893 kcal/mol |
19.1758 kcal/mol |
22 61@LB@ | |@LB@5'-AAA...AAGUG CU UUGUUGUUUU CGCCG...GCG-3'@LB@ CGCAGCCGU GCUG CCCGUCAGAAUGC@LB@ |:||:|||| ||:: |||:||||||::|@LB@ GUGUUGGCA CGGU GGGUAGUCUUGUG@LB@3'-UUU...UUGUA UU UUUC CGUAA...UCA-5'@LB@ | |@LB@ 70 37@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -35.5971 kcal/mol@LB@Unfolding Energy - mRNA 10.3893 kcal/mol@LB@Unfolding Energy - sRNA 19.1758 kcal/mol@LB@@LB@Position - mRNA 23 -- 60@LB@Position - sRNA 38 -- 69@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 43 -- 49@LB@ |
23 |
0.0005914 |
0.08814 |
stm3466 |
crp |
-13.97 |
0.171291 |
272 -- 288 |
36 -- 50 |
transcriptional regulator Crp |
|
_____________271_______________________________289\n_____________|_________________________________|\n5'-ACG...CGAAA______CUAAA________________C_____UAAUA...AGG-3'\n______________GCUAUG_____ACAGACA____AGAUG_UACAG\n______________:|||||_____|||||||____|:|||_|||||\n______________UGAUAC_____UGUCUGU____UUUAC_AUGUC\n3'-UUU...AUUAG______C___________CCCA___________CUUCA...UCA-5'\n_____________|_________________________________|\n_____________51________________________________35\n |
21 -- 27 |
155 -- 161 |
-20.3438 kcal/mol |
4.64329 kcal/mol |
5.58455 kcal/mol |
271 289@LB@ | |@LB@5'-ACG...CGAAA CUAAA C UAAUA...AGG-3'@LB@ GCUAUG ACAGACA AGAUG UACAG@LB@ :||||| ||||||| |:||| |||||@LB@ UGAUAC UGUCUGU UUUAC AUGUC@LB@3'-UUU...AUUAG C CCCA CUUCA...UCA-5'@LB@ | |@LB@ 51 35@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -20.3438 kcal/mol@LB@Unfolding Energy - mRNA 4.64329 kcal/mol@LB@Unfolding Energy - sRNA 5.58455 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 36 -- 50@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 155 -- 161@LB@ |
24 |
0.000609 |
0.08814 |
stm3510 |
yhgH |
-18.34 |
0.033208 |
106 -- 153 |
42 -- 84 |
DNA utilization protein GntX |
|
_____________105____________________________________154\n_____________|______________________________________|\n5'-CCG...UCCGU____________G__G___AUUUCCCUC__________UGCCA...GCG-3'\n______________GCAGCAGCACAA_AU_ACA_________GCCGUAGGUC\n______________:||:||:|||||_||_|||_________:|||||:|:|\n______________UGUUGUUGUGUU_UA_UGU_________UGGCAUUCGG\n3'-UUU...GUUUG____________G__G______________________UUUUC...UCA-5'\n_____________|______________________________________|\n_____________85_____________________________________41\n |
135 -- 141 |
58 -- 64 |
-35.7194 kcal/mol |
10.0869 kcal/mol |
11.5136 kcal/mol |
105 154@LB@ | |@LB@5'-CCG...UCCGU G G AUUUCCCUC UGCCA...GCG-3'@LB@ GCAGCAGCACAA AU ACA GCCGUAGGUC@LB@ :||:||:||||| || ||| :|||||:|:|@LB@ UGUUGUUGUGUU UA UGU UGGCAUUCGG@LB@3'-UUU...GUUUG G G UUUUC...UCA-5'@LB@ | |@LB@ 85 41@LB@@LB@@LB@Energy -18.34 kcal/mol@LB@Hybridization Energy -35.7194 kcal/mol@LB@Unfolding Energy - mRNA 10.0869 kcal/mol@LB@Unfolding Energy - sRNA 11.5136 kcal/mol@LB@@LB@Position - mRNA 106 -- 153@LB@Position - sRNA 42 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 58 -- 64@LB@ |
25 |
0.0006298 |
0.08814 |
stm3161 |
metC |
-13.21 |
0.223681 |
190 -- 249 |
35 -- 90 |
cystathionine beta-lyase |
|
_____________189__________________250\n_____________|____________________|\n5'-CAA...AACUG_________G__________AAAAA...CAC-3'\n______________GUAAACGCA__GACGCAGCA\n______________|:||||:||__:||:||:||\n______________CGUUUGUGU__UUGUGUUGU\n3'-UUU...GUUAA_________UG_________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________34\n |
243 -- 249 |
71 -- 77 |
-21.5854 kcal/mol |
5.07977 kcal/mol |
3.80671 kcal/mol |
189 250@LB@ | |@LB@5'-CAA...AACUG G AAAAA...CAC-3'@LB@ GUAAACGCA GACGCAGCA@LB@ |:||||:|| :||:||:||@LB@ CGUUUGUGU UUGUGUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -21.5854 kcal/mol@LB@Unfolding Energy - mRNA 5.07977 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 190 -- 249@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 71 -- 77@LB@ |
26 |
0.0006768 |
0.08814 |
stm1365 |
ydiJ |
-17.55 |
0.045121 |
78 -- 116 |
57 -- 91 |
similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa) 88% identity in aa 1 - 1017 |
|
_____________77_________________________117\n_____________|__________________________|\n5'-CUA...AAUGU_________AAUA_____________AACGA...CCA-3'\n______________GAUACAACA____ACGCAACA_CGCA\n______________:|:||||||____||:|||||_|:||\n______________UUGUGUUGU____UGUGUUGU_GUGU\n3'-UUU...AACGU_____________________A____UGGCA...UCA-5'\n_____________|__________________________|\n_____________92_________________________56\n |
95 -- 101 |
71 -- 77 |
-21.9961 kcal/mol |
1.97147 kcal/mol |
5.98953 kcal/mol |
77 117@LB@ | |@LB@5'-CUA...AAUGU AAUA AACGA...CCA-3'@LB@ GAUACAACA ACGCAACA CGCA@LB@ :|:|||||| ||:||||| |:||@LB@ UUGUGUUGU UGUGUUGU GUGU@LB@3'-UUU...AACGU A UGGCA...UCA-5'@LB@ | |@LB@ 92 56@LB@@LB@@LB@Energy -17.55 kcal/mol@LB@Hybridization Energy -21.9961 kcal/mol@LB@Unfolding Energy - mRNA 1.97147 kcal/mol@LB@Unfolding Energy - sRNA 5.98953 kcal/mol@LB@@LB@Position - mRNA 78 -- 116@LB@Position - sRNA 57 -- 91@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 71 -- 77@LB@ |
27 |
0.0006872 |
0.08814 |
stm1806 |
nhaB |
-13.59 |
0.196266 |
64 -- 136 |
66 -- 135 |
Na+/H+ antiporter NhaB |
|
_____________63___________________________________________________________________________137\n_____________|____________________________________________________________________________|\n5'-AGC...AUGAA_________GAUCAAG______AUU______U_____CU______AUC_U____G__UU__UU____U________CUCGC...CAU-3'\n______________GAAAAAGGG_______GC_ACC____UCUGA_AUCGC__GCCAAU___G_UAAG_AC__GC__GCAU__CGUCGCG\n______________|||||||||_______||_|||____|||||_|||||__:|||||___|_:||:_||__:|__:||:__|:||:|:\n______________CUUUUUCCC_______CG_UGG____AGACU_UAGCG__UGGUUA___C_GUUU_UG__UG__UGUG__GUAGUGU\n3'-UUU...CUUCA_________AUCAGAG__A___CACC___________UC______A________G__U___U_____UU_______UGGCA...UCA-5'\n_____________|____________________________________________________________________________|\n_____________136__________________________________________________________________________65\n |
130 -- 136 |
66 -- 72 |
-51.3167 kcal/mol |
14.8404 kcal/mol |
22.5826 kcal/mol |
63 137@LB@ | |@LB@5'-AGC...AUGAA GAUCAAG AUU U CU AUC U G UU UU U CUCGC...CAU-3'@LB@ GAAAAAGGG GC ACC UCUGA AUCGC GCCAAU G UAAG AC GC GCAU CGUCGCG@LB@ ||||||||| || ||| ||||| ||||| :||||| | :||: || :| :||: |:||:|:@LB@ CUUUUUCCC CG UGG AGACU UAGCG UGGUUA C GUUU UG UG UGUG GUAGUGU@LB@3'-UUU...CUUCA AUCAGAG A CACC UC A G U U UU UGGCA...UCA-5'@LB@ | |@LB@ 136 65@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -51.3167 kcal/mol@LB@Unfolding Energy - mRNA 14.8404 kcal/mol@LB@Unfolding Energy - sRNA 22.5826 kcal/mol@LB@@LB@Position - mRNA 64 -- 136@LB@Position - sRNA 66 -- 135@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
28 |
0.0007333 |
0.08814 |
stm0376 |
sbmA |
-15.26 |
0.107034 |
68 -- 102 |
55 -- 90 |
peptide transporter |
|
_____________67______________________________103\n_____________|_______________________________|\n5'-GCU...AGAAA_______UA____U______GUAG_______UGCCU...AUU-3'\n______________UGCGAAC__AGCG_CACAAC____GUCACAA\n______________|||:|||__|:|:_||||||____:||||||\n______________ACGUUUG__UUGU_GUGUUG____UAGUGUU\n3'-UUU...GGUUA_______UG____U_________________GGCAU...UCA-5'\n_____________|_______________________________|\n_____________91______________________________54\n |
99 -- 105 |
65 -- 71 |
-26.4432 kcal/mol |
7.11088 kcal/mol |
6.59083 kcal/mol |
67 103@LB@ | |@LB@5'-GCU...AGAAA UA U GUAG UGCCU...AUU-3'@LB@ UGCGAAC AGCG CACAAC GUCACAA@LB@ |||:||| |:|: |||||| :||||||@LB@ ACGUUUG UUGU GUGUUG UAGUGUU@LB@3'-UUU...GGUUA UG U GGCAU...UCA-5'@LB@ | |@LB@ 91 54@LB@@LB@@LB@Energy -15.26 kcal/mol@LB@Hybridization Energy -26.4432 kcal/mol@LB@Unfolding Energy - mRNA 7.11088 kcal/mol@LB@Unfolding Energy - sRNA 6.59083 kcal/mol@LB@@LB@Position - mRNA 68 -- 102@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 65 -- 71@LB@ |
29 |
0.0007392 |
0.08814 |
stm3096 |
yqgE |
-16.45 |
0.068552 |
198 -- 251 |
37 -- 84 |
DUF179 domain-containing protein |
|
_____________197___________252\n_____________|_____________|\n5'-UGG...UAUAU_____________CAGGA...GCG-3'\n______________UUGCGAGCACAAC\n______________||||:|:||||||\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________85____________36\n |
284 -- 290 |
80 -- 86 |
-18.5161 kcal/mol |
2.82597 kcal/mol |
3.5889 kcal/mol |
197 252@LB@ | |@LB@5'-UGG...UAUAU CAGGA...GCG-3'@LB@ UUGCGAGCACAAC@LB@ ||||:|:||||||@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -18.5161 kcal/mol@LB@Unfolding Energy - mRNA 2.82597 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 198 -- 251@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 80 -- 86@LB@ |
30 |
0.0007612 |
0.08814 |
stm3909 |
ilvC |
-21.15 |
0.011132 |
166 -- 188 |
66 -- 89 |
ketol-acid reductoisomerase |
|
_____________165_____________________189\n_____________|_______________________|\n5'-CCA...AACAA_______________________GGAGU...GCU-3'\n______________UAAGCGCGAC_ACACAACAUCAC\n______________:||:|:|:||_||||||||||||\n______________GUUUGUGUUG_UGUGUUGUAGUG\n3'-UUU...UUAAC__________U____________UUGGC...UCA-5'\n_____________|_______________________|\n_____________90______________________65\n |
181 -- 187 |
67 -- 73 |
-29.859 kcal/mol |
2.61707 kcal/mol |
5.66809 kcal/mol |
165 189@LB@ | |@LB@5'-CCA...AACAA GGAGU...GCU-3'@LB@ UAAGCGCGAC ACACAACAUCAC@LB@ :||:|:|:|| ||||||||||||@LB@ GUUUGUGUUG UGUGUUGUAGUG@LB@3'-UUU...UUAAC U UUGGC...UCA-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -21.15 kcal/mol@LB@Hybridization Energy -29.859 kcal/mol@LB@Unfolding Energy - mRNA 2.61707 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 166 -- 188@LB@Position - sRNA 66 -- 89@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 67 -- 73@LB@ |