151 |
0.00796 |
0.1845 |
stm2365 |
folC |
-10.71 |
0.491716 |
269 -- 300 |
50 -- 78 |
bifunctional tetrahydrofolate synthase/dihydrofolate synthase |
|
_____________268__________301\n_____________|____________|\n5'-CCG...CGGCG____A_______UCUGA...AGC-3'\n______________CCGG_UCAGGAG\n______________||||_||||||:\n______________GGCC_AGUCCUU\n3'-UUU...AGCAA____G_______CA-5'\n_____________|____________|\n_____________79___________49\n |
115 -- 121 |
3 -- 9 |
-17.3652 kcal/mol |
5.30633 kcal/mol |
4.72771 kcal/mol |
268 301@LB@ | |@LB@5'-CCG...CGGCG A UCUGA...AGC-3'@LB@ CCGG UCAGGAG@LB@ |||| ||||||:@LB@ GGCC AGUCCUU@LB@3'-UUU...AGCAA G CA-5'@LB@ | |@LB@ 79 49@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -17.3652 kcal/mol@LB@Unfolding Energy - mRNA 5.30633 kcal/mol@LB@Unfolding Energy - sRNA 4.72771 kcal/mol@LB@@LB@Position - mRNA 269 -- 300@LB@Position - sRNA 50 -- 78@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 3 -- 9@LB@ |
152 |
0.008087 |
0.1845 |
stm0213 |
dapD |
-12.65 |
0.271269 |
222 -- 289 |
49 -- 104 |
2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase |
|
_____________221______________________290\n_____________|________________________|\n5'-UUU...UUAAC_________GUU___G________UGAGA...AGG-3'\n______________AAUGCAGCA___ACA_AACGUUAU\n______________||::||:||___|||_|||:|:|:\n______________UUGUGUUGU___UGU_UUGUAGUG\n3'-UUU...AACGU_______________G________UUGGC...UCA-5'\n_____________|________________________|\n_____________105______________________48\n |
202 -- 208 |
79 -- 85 |
-17.6746 kcal/mol |
3.78795 kcal/mol |
5.3513 kcal/mol |
221 290@LB@ | |@LB@5'-UUU...UUAAC GUU G UGAGA...AGG-3'@LB@ AAUGCAGCA ACA AACGUUAU@LB@ ||::||:|| ||| |||:|:|:@LB@ UUGUGUUGU UGU UUGUAGUG@LB@3'-UUU...AACGU G UUGGC...UCA-5'@LB@ | |@LB@ 105 48@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -17.6746 kcal/mol@LB@Unfolding Energy - mRNA 3.78795 kcal/mol@LB@Unfolding Energy - sRNA 5.3513 kcal/mol@LB@@LB@Position - mRNA 222 -- 289@LB@Position - sRNA 49 -- 104@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 79 -- 85@LB@ |
153 |
0.008123 |
0.1845 |
stm2512 |
xseA |
-14.57 |
0.138273 |
215 -- 252 |
42 -- 82 |
exodeoxyribonuclease VII large subunit |
|
_____________214________253\n_____________|__________|\n5'-CGU...UUUUU__________GCCUU...GCG-3'\n______________ACCGUAAGCC\n______________||||||||||\n______________UGGCAUUCGG\n3'-UUU...AGUGU__________UUUUC...UCA-5'\n_____________|__________|\n_____________83_________41\n |
234 -- 240 |
56 -- 62 |
-17.1871 kcal/mol |
1.1981 kcal/mol |
7.48121 kcal/mol |
214 253@LB@ | |@LB@5'-CGU...UUUUU GCCUU...GCG-3'@LB@ ACCGUAAGCC@LB@ ||||||||||@LB@ UGGCAUUCGG@LB@3'-UUU...AGUGU UUUUC...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -17.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.1981 kcal/mol@LB@Unfolding Energy - sRNA 7.48121 kcal/mol@LB@@LB@Position - mRNA 215 -- 252@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 56 -- 62@LB@ |
154 |
0.008185 |
0.1845 |
stm3738 |
yigC |
-11.16 |
0.433331 |
228 -- 246 |
55 -- 74 |
similar to E. coli orf hypothetical protein (AAC76670.1); Blastp hit to AAC76670.1 (223 aa) 94% identity in aa 19 - 223 |
|
_____________227__________________247\n_____________|____________________|\n5'-UAA...ACCUC_____________AC_____AAAUG...UUA-3'\n______________GCA__UACAAUAA__CACAA\n______________|||__:||||:||__|||||\n______________CGU__GUGUUGUU__GUGUU\n3'-UUU...GUUAA___UU_______________GUAGU...UCA-5'\n_____________|____________________|\n_____________75___________________54\n |
27 -- 33 |
78 -- 84 |
-12.6647 kcal/mol |
0.985902 kcal/mol |
3.77104 kcal/mol |
227 247@LB@ | |@LB@5'-UAA...ACCUC AC AAAUG...UUA-3'@LB@ GCA UACAAUAA CACAA@LB@ ||| :||||:|| |||||@LB@ CGU GUGUUGUU GUGUU@LB@3'-UUU...GUUAA UU GUAGU...UCA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -11.16 kcal/mol@LB@Hybridization Energy -12.6647 kcal/mol@LB@Unfolding Energy - mRNA 0.985902 kcal/mol@LB@Unfolding Energy - sRNA 3.77104 kcal/mol@LB@@LB@Position - mRNA 228 -- 246@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 78 -- 84@LB@ |
155 |
0.008213 |
0.1845 |
stm3112 |
mltC |
-21.66 |
0.009126 |
170 -- 198 |
62 -- 90 |
murein transglycosylase C |
|
_____________169____________________________199\n_____________|______________________________|\n5'-UAA...ACAUG___UA________________G___UC___GAAUG...UCA-3'\n______________GCA___ACGACAACACAACAU_CAC__CCG\n______________|||___||:||||||||||||_|||__|||\n______________CGU___UGUUGUUGUGUUGUA_GUG__GGC\n3'-UUU...GUUAA___UUG___________________UU___AUUCG...UCA-5'\n_____________|______________________________|\n_____________91_____________________________61\n |
183 -- 189 |
70 -- 76 |
-33.7206 kcal/mol |
4.25464 kcal/mol |
8.62576 kcal/mol |
169 199@LB@ | |@LB@5'-UAA...ACAUG UA G UC GAAUG...UCA-3'@LB@ GCA ACGACAACACAACAU CAC CCG@LB@ ||| ||:|||||||||||| ||| |||@LB@ CGU UGUUGUUGUGUUGUA GUG GGC@LB@3'-UUU...GUUAA UUG UU AUUCG...UCA-5'@LB@ | |@LB@ 91 61@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -33.7206 kcal/mol@LB@Unfolding Energy - mRNA 4.25464 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 170 -- 198@LB@Position - sRNA 62 -- 90@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 70 -- 76@LB@ |
156 |
0.008228 |
0.1845 |
stm1715 |
yciN |
-28.69 |
0.000575 |
104 -- 163 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC74355.1); Blastp hit to AAC74355.1 (83 aa) 92% identity in aa 1 - 83 |
|
_____________103___________________________________________________________164\n_____________|_____________________________________________________________|\n5'-UCG...UGCCA____________UG____AUC_____AUUUC_______AAUAUUU___________G____UCAGC...CCA-3'\n______________GUGAACGCAACA__ACAA___CAUCA_____CUGUGAG_______GCCCAUCAGAA__UGC\n______________|::|||:|||||__||||___|||||_____|:||:||_______|||||||||||__:||\n______________CGUUUGUGUUGU__UGUU___GUAGU_____GGCAUUC_______CGGGUAGUCUU__GCG\n3'-UUU...GUUAA____________UG____________GUU_________GGUUUU____________GU___UAAGG...UCA-5'\n_____________|_____________________________________________________________|\n_____________91____________________________________________________________35\n |
152 -- 158 |
42 -- 48 |
-53.6458 kcal/mol |
9.96696 kcal/mol |
22.5 kcal/mol |
103 164@LB@ | |@LB@5'-UCG...UGCCA UG AUC AUUUC AAUAUUU G UCAGC...CCA-3'@LB@ GUGAACGCAACA ACAA CAUCA CUGUGAG GCCCAUCAGAA UGC@LB@ |::|||:||||| |||| ||||| |:||:|| ||||||||||| :||@LB@ CGUUUGUGUUGU UGUU GUAGU GGCAUUC CGGGUAGUCUU GCG@LB@3'-UUU...GUUAA UG GUU GGUUUU GU UAAGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -28.69 kcal/mol@LB@Hybridization Energy -53.6458 kcal/mol@LB@Unfolding Energy - mRNA 9.96696 kcal/mol@LB@Unfolding Energy - sRNA 22.5 kcal/mol@LB@@LB@Position - mRNA 104 -- 163@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 42 -- 48@LB@ |
157 |
0.008234 |
0.1845 |
stm0693 |
fur |
-16.04 |
0.080078 |
199 -- 253 |
31 -- 90 |
ferric iron uptake transcriptional regulator |
|
_____________198________________________254\n_____________|__________________________|\n5'-GCA...AUUCC___U___UG__________C______AAGAA...ACG-3'\n______________GCA_GAC__ACAACAAUAC_GCAUUA\n______________|||_:||__|||||||:||_:|||:|\n______________CGU_UUG__UGUUGUUGUG_UGUAGU\n3'-UUU...GUUAA___________________U______GUUGG...UCA-5'\n_____________|__________________________|\n_____________91_________________________30\n |
211 -- 217 |
75 -- 81 |
-20.9388 kcal/mol |
2.89423 kcal/mol |
5.29697 kcal/mol |
198 254@LB@ | |@LB@5'-GCA...AUUCC U UG C AAGAA...ACG-3'@LB@ GCA GAC ACAACAAUAC GCAUUA@LB@ ||| :|| |||||||:|| :|||:|@LB@ CGU UUG UGUUGUUGUG UGUAGU@LB@3'-UUU...GUUAA U GUUGG...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -16.04 kcal/mol@LB@Hybridization Energy -20.9388 kcal/mol@LB@Unfolding Energy - mRNA 2.89423 kcal/mol@LB@Unfolding Energy - sRNA 5.29697 kcal/mol@LB@@LB@Position - mRNA 199 -- 253@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
158 |
0.00827 |
0.1845 |
stm1712 |
acnA |
-14.47 |
0.143385 |
236 -- 294 |
48 -- 104 |
aconitate hydratase 1 |
|
_____________235_________________295\n_____________|___________________|\n5'-AUC...CAACC_______G_AU________CGCAA...GCG-3'\n______________CUGUGGA_A__CAGGGUAA\n______________||:||||_|__||||||||\n______________GAUACCU_U__GUCCCAUU\n3'-UUU...UUAGU_______G_CU________UACAU...UCA-5'\n_____________|___________________|\n_____________105_________________47\n |
167 -- 173 |
149 -- 155 |
-24.0869 kcal/mol |
10.3759 kcal/mol |
4.11594 kcal/mol |
235 295@LB@ | |@LB@5'-AUC...CAACC G AU CGCAA...GCG-3'@LB@ CUGUGGA A CAGGGUAA@LB@ ||:|||| | ||||||||@LB@ GAUACCU U GUCCCAUU@LB@3'-UUU...UUAGU G CU UACAU...UCA-5'@LB@ | |@LB@ 105 47@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -24.0869 kcal/mol@LB@Unfolding Energy - mRNA 10.3759 kcal/mol@LB@Unfolding Energy - sRNA 4.11594 kcal/mol@LB@@LB@Position - mRNA 236 -- 294@LB@Position - sRNA 48 -- 104@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 149 -- 155@LB@ |
159 |
0.008305 |
0.1845 |
stm3625 |
yhjV |
-13.06 |
0.235438 |
203 -- 240 |
55 -- 86 |
transporter |
|
_____________202________________________241\n_____________|__________________________|\n5'-UUA...UAUUU_____________CUCUA________CGACA...UCU-3'\n______________UGGGCAG__GGGG______UGCAGGA\n______________|||:|||__:|||______|:|||||\n______________ACCUGUC__UCCC______AUGUCCU\n3'-UUU...GUGAU_______UG____AUUUAC_______UCACU...UCA-5'\n_____________|__________________________|\n_____________87_________________________54\n |
202 -- 208 |
139 -- 145 |
-24.2103 kcal/mol |
7.6176 kcal/mol |
3.71206 kcal/mol |
202 241@LB@ | |@LB@5'-UUA...UAUUU CUCUA CGACA...UCU-3'@LB@ UGGGCAG GGGG UGCAGGA@LB@ |||:||| :||| |:|||||@LB@ ACCUGUC UCCC AUGUCCU@LB@3'-UUU...GUGAU UG AUUUAC UCACU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -24.2103 kcal/mol@LB@Unfolding Energy - mRNA 7.6176 kcal/mol@LB@Unfolding Energy - sRNA 3.71206 kcal/mol@LB@@LB@Position - mRNA 203 -- 240@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 139 -- 145@LB@ |
160 |
0.008331 |
0.1845 |
stm0002 |
thrA |
-15.10 |
0.113872 |
18 -- 81 |
44 -- 90 |
bifunctional aspartate kinase/homoserine dehydrogenase I |
|
_____________17______________________82\n_____________|_______________________|\n5'-CCA...UACAA________AAUAA__________AGUAC...UAG-3'\n______________GACAGACA_____AAAUG_ACAG\n______________||||||||_____|||||_||||\n______________CUGUCUGU_____UUUAC_UGUC\n3'-UUU...GAUAC________CCCA______A____CUUCA...UCA-5'\n_____________|_______________________|\n_____________91______________________43\n |
19 -- 25 |
155 -- 161 |
-19.4516 kcal/mol |
0.236149 kcal/mol |
3.68511 kcal/mol |
17 82@LB@ | |@LB@5'-CCA...UACAA AAUAA AGUAC...UAG-3'@LB@ GACAGACA AAAUG ACAG@LB@ |||||||| ||||| ||||@LB@ CUGUCUGU UUUAC UGUC@LB@3'-UUU...GAUAC CCCA A CUUCA...UCA-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -15.10 kcal/mol@LB@Hybridization Energy -19.4516 kcal/mol@LB@Unfolding Energy - mRNA 0.236149 kcal/mol@LB@Unfolding Energy - sRNA 3.68511 kcal/mol@LB@@LB@Position - mRNA 18 -- 81@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 155 -- 161@LB@ |