191 |
0.01055 |
0.1967 |
stm0634 |
ybeF |
-18.83 |
0.027435 |
210 -- 262 |
35 -- 82 |
putative LysR family transcriptional regulator |
|
_____________209____________________________________________________________263\n_____________|______________________________________________________________|\n5'-GCU...CGUGA____UA_____C_G____AAAG_______________UCAACA____________AAC____AAUUU...UGU-3'\n______________GUGA__AUAAU_A_GCAG____ACAACCG___GCCGA______CCUA_CAGGACA___CGCA\n______________|::|__|:||:_|_:||:____|||||||___|||:|______||:|_|||:|||___||||\n______________CGUU__UGUUG_U_UGUU____UGUUGGC___CGGUU______GGGU_GUCUUGU___GCGU\n3'-UUU...GUUAA____UG_____U_G____GUAG_______AUU_____UUC_______A______________AAGGC...UCA-5'\n_____________|______________________________________________________________|\n_____________83_____________________________________________________________34\n |
227 -- 233 |
62 -- 68 |
-42.1612 kcal/mol |
9.04443 kcal/mol |
22.5095 kcal/mol |
209 263@LB@ | |@LB@5'-GCU...CGUGA UA C G AAAG UCAACA AAC AAUUU...UGU-3'@LB@ GUGA AUAAU A GCAG ACAACCG GCCGA CCUA CAGGACA CGCA@LB@ |::| |:||: | :||: ||||||| |||:| ||:| |||:||| ||||@LB@ CGUU UGUUG U UGUU UGUUGGC CGGUU GGGU GUCUUGU GCGU@LB@3'-UUU...GUUAA UG U G GUAG AUU UUC A AAGGC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -42.1612 kcal/mol@LB@Unfolding Energy - mRNA 9.04443 kcal/mol@LB@Unfolding Energy - sRNA 22.5095 kcal/mol@LB@@LB@Position - mRNA 210 -- 262@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 62 -- 68@LB@ |
192 |
0.01067 |
0.197 |
stm2650 |
yfiP |
-13.22 |
0.223534 |
188 -- 232 |
36 -- 90 |
DTW domain-containing protein |
|
_____________187_________________________233\n_____________|___________________________|\n5'-UCA...UCUCC________UUUCUAUGACC________UGUCC...GCU-3'\n______________GCAAACGC___________AAUAACGC\n______________||||||:|___________||:|||:|\n______________CGUUUGUG___________UUGUUGUG\n3'-UUU...GUUAA___________________________UUGUA...UCA-5'\n_____________|___________________________|\n_____________91__________________________35\n |
208 -- 214 |
75 -- 81 |
-16.7007 kcal/mol |
3.95203 kcal/mol |
3.72363 kcal/mol |
187 233@LB@ | |@LB@5'-UCA...UCUCC UUUCUAUGACC UGUCC...GCU-3'@LB@ GCAAACGC AAUAACGC@LB@ ||||||:| ||:|||:|@LB@ CGUUUGUG UUGUUGUG@LB@3'-UUU...GUUAA UUGUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -16.7007 kcal/mol@LB@Unfolding Energy - mRNA 3.95203 kcal/mol@LB@Unfolding Energy - sRNA 3.72363 kcal/mol@LB@@LB@Position - mRNA 188 -- 232@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 75 -- 81@LB@ |
193 |
0.01075 |
0.197 |
stm3734 |
rph |
-15.48 |
0.098722 |
165 -- 206 |
34 -- 78 |
ribonuclease PH |
|
_____________164____________________________207\n_____________|______________________________|\n5'-GCG...AUAAU_____________U___UUU__________AUCUC...GAG-3'\n______________GCGCAGC__CACA_UCG___UAAGCCGGAG\n______________:|:||:|__||||_:||___||||||::|:\n______________UGUGUUG__GUGU_GGC___AUUCGGUUUU\n3'-UUU...GUUGU_______UA____U________________CGGGU...UCA-5'\n_____________|______________________________|\n_____________79_____________________________33\n |
183 -- 189 |
55 -- 61 |
-24.9708 kcal/mol |
4.11178 kcal/mol |
11.3295 kcal/mol |
164 207@LB@ | |@LB@5'-GCG...AUAAU U UUU AUCUC...GAG-3'@LB@ GCGCAGC CACA UCG UAAGCCGGAG@LB@ :|:||:| |||| :|| ||||||::|:@LB@ UGUGUUG GUGU GGC AUUCGGUUUU@LB@3'-UUU...GUUGU UA U CGGGU...UCA-5'@LB@ | |@LB@ 79 33@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -24.9708 kcal/mol@LB@Unfolding Energy - mRNA 4.11178 kcal/mol@LB@Unfolding Energy - sRNA 11.3295 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 34 -- 78@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 55 -- 61@LB@ |
194 |
0.01081 |
0.197 |
stm1954 |
fliY |
-13.82 |
0.181182 |
183 -- 228 |
153 -- 193 |
cystine ABC transporter substrate-binding protein |
|
_____________182________________________229\n_____________|__________________________|\n5'-CAG...GUCUA_________AC____AUAUU______UACUA...UGC-3'\n______________UGGUCAUUA__GGCA_____CGGGGU\n______________|::|||:||__|:||_____|:||||\n______________AUUAGUGAU__CUGU_____GUCCCA\n3'-UUU...AUGUA_________AC____CU_________UUUAC...UCA-5'\n_____________|__________________________|\n_____________194________________________152\n |
173 -- 179 |
165 -- 171 |
-18.5851 kcal/mol |
4.12345 kcal/mol |
4.10259 kcal/mol |
182 229@LB@ | |@LB@5'-CAG...GUCUA AC AUAUU UACUA...UGC-3'@LB@ UGGUCAUUA GGCA CGGGGU@LB@ |::|||:|| |:|| |:||||@LB@ AUUAGUGAU CUGU GUCCCA@LB@3'-UUU...AUGUA AC CU UUUAC...UCA-5'@LB@ | |@LB@ 194 152@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -18.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.12345 kcal/mol@LB@Unfolding Energy - sRNA 4.10259 kcal/mol@LB@@LB@Position - mRNA 183 -- 228@LB@Position - sRNA 153 -- 193@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 165 -- 171@LB@ |
195 |
0.01085 |
0.197 |
stm0549 |
fimZ |
-13.17 |
0.226725 |
219 -- 235 |
155 -- 171 |
DNA-binding response regulator |
|
_____________218___________236\n_____________|_____________|\n5'-CAG...CUGUU_____________AACAC...UGA-3'\n______________AUCAUUAUGGACG\n______________||||:|||||||:\n______________UAGUGAUACCUGU\n3'-UUU...GUAAU_____________CUGUC...UCA-5'\n_____________|_____________|\n_____________172___________154\n |
225 -- 231 |
159 -- 165 |
-17.3187 kcal/mol |
3.33371 kcal/mol |
3.42647 kcal/mol |
218 236@LB@ | |@LB@5'-CAG...CUGUU AACAC...UGA-3'@LB@ AUCAUUAUGGACG@LB@ ||||:|||||||:@LB@ UAGUGAUACCUGU@LB@3'-UUU...GUAAU CUGUC...UCA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -17.3187 kcal/mol@LB@Unfolding Energy - mRNA 3.33371 kcal/mol@LB@Unfolding Energy - sRNA 3.42647 kcal/mol@LB@@LB@Position - mRNA 219 -- 235@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
196 |
0.01089 |
0.197 |
stm3904 |
ilvD |
-14.14 |
0.161583 |
237 -- 253 |
179 -- 194 |
dihydroxy-acid dehydratase |
|
_____________236___________254\n_____________|_____________|\n5'-CGA...UGAAG___AA________AGUAA...GCA-3'\n______________GGA__AGAUGGGG\n______________|||__|||::|||\n______________CCU__UCUGUCCC\n3'-UUU...UGAUA___G_________AUUUA...UCA-5'\n_____________|_____________|\n_____________195___________178\n |
182 -- 188 |
152 -- 158 |
-15.6614 kcal/mol |
1.17371 kcal/mol |
3.10307 kcal/mol |
236 254@LB@ | |@LB@5'-CGA...UGAAG AA AGUAA...GCA-3'@LB@ GGA AGAUGGGG@LB@ ||| |||::|||@LB@ CCU UCUGUCCC@LB@3'-UUU...UGAUA G AUUUA...UCA-5'@LB@ | |@LB@ 195 178@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -15.6614 kcal/mol@LB@Unfolding Energy - mRNA 1.17371 kcal/mol@LB@Unfolding Energy - sRNA 3.10307 kcal/mol@LB@@LB@Position - mRNA 237 -- 253@LB@Position - sRNA 179 -- 194@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 152 -- 158@LB@ |
197 |
0.01093 |
0.197 |
stm2924 |
rpoS |
-16.80 |
0.060020 |
191 -- 216 |
36 -- 60 |
RNA polymerase sigma factor RpoS |
|
_____________190________________________________217\n_____________|__________________________________|\n___5'-CGGGAACA_________U____C___GCAAAAAA________AUGGG...AGG-3'\n______________ACAGGAAGU_AAGG_GGG________UCGCUACU\n______________|||||||||_||::_|||________|||||||:\n______________UGUCCUUCA_UUUU_CCC________AGCGAUGG\n3'-UUU...UUACA_________C____U___AUCAG___________CACCA...UCA-5'\n_____________|__________________________________|\n_____________61_________________________________35\n |
36 -- 42 |
114 -- 120 |
-31.3768 kcal/mol |
8.74888 kcal/mol |
8.99738 kcal/mol |
190 217@LB@ | |@LB@ 5'-CGGGAACA U C GCAAAAAA AUGGG...AGG-3'@LB@ ACAGGAAGU AAGG GGG UCGCUACU@LB@ ||||||||| ||:: ||| |||||||:@LB@ UGUCCUUCA UUUU CCC AGCGAUGG@LB@3'-UUU...UUACA C U AUCAG CACCA...UCA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -31.3768 kcal/mol@LB@Unfolding Energy - mRNA 8.74888 kcal/mol@LB@Unfolding Energy - sRNA 8.99738 kcal/mol@LB@@LB@Position - mRNA 191 -- 216@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 114 -- 120@LB@ |
198 |
0.01098 |
0.197 |
stm2803 |
N/A |
-14.51 |
0.140962 |
192 -- 262 |
36 -- 101 |
DNA-binding transcriptional regulator |
|
_____________191___________________________263\n_____________|_____________________________|\n5'-GCU...AAAAA________UA___C_____UAU_______UCGCU...CGC-3'\n______________GCAGACCA__UGC__GCGC___CAGCACA\n______________||||||||__|||__:|:|___||:||||\n______________CGUCUGGU__ACG__UGUG___GUUGUGU\n3'-UUU...CUUAG________UA___UU____UU________UGUAG...UCA-5'\n_____________|_____________________________|\n_____________102___________________________35\n |
213 -- 219 |
74 -- 80 |
-31.0005 kcal/mol |
8.41541 kcal/mol |
13.1066 kcal/mol |
191 263@LB@ | |@LB@5'-GCU...AAAAA UA C UAU UCGCU...CGC-3'@LB@ GCAGACCA UGC GCGC CAGCACA@LB@ |||||||| ||| :|:| ||:||||@LB@ CGUCUGGU ACG UGUG GUUGUGU@LB@3'-UUU...CUUAG UA UU UU UGUAG...UCA-5'@LB@ | |@LB@ 102 35@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -31.0005 kcal/mol@LB@Unfolding Energy - mRNA 8.41541 kcal/mol@LB@Unfolding Energy - sRNA 13.1066 kcal/mol@LB@@LB@Position - mRNA 192 -- 262@LB@Position - sRNA 36 -- 101@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 74 -- 80@LB@ |
199 |
0.01101 |
0.197 |
stm3346 |
yhcM |
-12.83 |
0.254909 |
186 -- 228 |
33 -- 82 |
cell division protein ZapE |
|
_____________185____________________229\n_____________|______________________|\n5'-CAG...UUCAA_G__UA__________UAU___AAGCC...AAA-3'\n______________G_AA__ACAAUAACAU___GCA\n______________|_||__||||:||||:___:||\n______________C_UU__UGUUGUUGUG___UGU\n3'-UUU...GUUAA_G__UG__________U_____AGUGU...UCA-5'\n_____________|______________________|\n_____________83_____________________32\n |
193 -- 199 |
75 -- 81 |
-14.0954 kcal/mol |
2.45302 kcal/mol |
3.80671 kcal/mol |
185 229@LB@ | |@LB@5'-CAG...UUCAA G UA UAU AAGCC...AAA-3'@LB@ G AA ACAAUAACAU GCA@LB@ | || ||||:||||: :||@LB@ C UU UGUUGUUGUG UGU@LB@3'-UUU...GUUAA G UG U AGUGU...UCA-5'@LB@ | |@LB@ 83 32@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -14.0954 kcal/mol@LB@Unfolding Energy - mRNA 2.45302 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 186 -- 228@LB@Position - sRNA 33 -- 82@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 75 -- 81@LB@ |
200 |
0.01112 |
0.198 |
stm2809 |
proV |
-15.77 |
0.088450 |
57 -- 94 |
50 -- 85 |
glycine betaine/L-proline ABC transporter ATP-binding protein |
|
_____________56______________________________________95\n_____________|_______________________________________|\n5'-UUC...AUCAC_____________C__________AUUCAU_________AAAUU...AAA-3'\n______________AGC_CGAUAGCAC____UCGCAAU______GCCAGAAGC\n______________|:|_|:|:|:|||____||:|||:______||||:||||\n______________UUG_GUUGUUGUG____AGUGUUG______CGGUUUUCG\n3'-UUU...AACGU___U_________UUGU_______GCAUU__________GGUAG...UCA-5'\n_____________|_______________________________________|\n_____________86______________________________________49\n |
65 -- 71 |
75 -- 81 |
-32.303 kcal/mol |
6.98444 kcal/mol |
14.5427 kcal/mol |
56 95@LB@ | |@LB@5'-UUC...AUCAC C AUUCAU AAAUU...AAA-3'@LB@ AGC CGAUAGCAC UCGCAAU GCCAGAAGC@LB@ |:| |:|:|:||| ||:|||: ||||:||||@LB@ UUG GUUGUUGUG AGUGUUG CGGUUUUCG@LB@3'-UUU...AACGU U UUGU GCAUU GGUAG...UCA-5'@LB@ | |@LB@ 86 49@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -32.303 kcal/mol@LB@Unfolding Energy - mRNA 6.98444 kcal/mol@LB@Unfolding Energy - sRNA 14.5427 kcal/mol@LB@@LB@Position - mRNA 57 -- 94@LB@Position - sRNA 50 -- 85@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 75 -- 81@LB@ |