111 |
0.005436 |
0.1728 |
stm2683 |
yfjB |
-15.36 |
0.103307 |
255 -- 299 |
43 -- 90 |
NAD(+) kinase |
|
_____________254___________________________________________________________________300\n_____________|_____________________________________________________________________|\n5'-CUC...UUCGC__________GAU____UU______UUCAA__________ACUCACAUU_____AUCAAUCU_______AAGGA...AGG-3'\n______________UUAUUAUGGG___CAGA__CAGGGU________GGGAAGU___________GUC________UCGCUAC\n______________|:|:|||||:___||||__||||||________:||||||___________|||________|||||||\n______________AGUGAUACCU___GUCU__GUCCCA________UCCUUCA___________CAG________AGCGAUG\n3'-UUU...UAAUU_________________________UUUACAUG_______CUUUUUCCCAU__________________GCACC...UCA-5'\n_____________|_____________________________________________________________________|\n_____________91____________________________________________________________________42\n |
179 -- 185 |
115 -- 121 |
-40.6869 kcal/mol |
14.2494 kcal/mol |
12.858 kcal/mol |
254 300@LB@ | |@LB@5'-CUC...UUCGC GAU UU UUCAA ACUCACAUU AUCAAUCU AAGGA...AGG-3'@LB@ UUAUUAUGGG CAGA CAGGGU GGGAAGU GUC UCGCUAC@LB@ |:|:|||||: |||| |||||| :|||||| ||| |||||||@LB@ AGUGAUACCU GUCU GUCCCA UCCUUCA CAG AGCGAUG@LB@3'-UUU...UAAUU UUUACAUG CUUUUUCCCAU GCACC...UCA-5'@LB@ | |@LB@ 91 42@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -40.6869 kcal/mol@LB@Unfolding Energy - mRNA 14.2494 kcal/mol@LB@Unfolding Energy - sRNA 12.858 kcal/mol@LB@@LB@Position - mRNA 255 -- 299@LB@Position - sRNA 43 -- 90@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 115 -- 121@LB@ |
112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
113 |
0.005549 |
0.1728 |
stm2948 |
cysJ |
-13.61 |
0.194760 |
269 -- 298 |
56 -- 85 |
sulfite reductase [NADPH] flavoprotein subunit alpha |
|
_____________268_______________________299\n_____________|_________________________|\n5'-GUU...CCGCU____UUACUG_______________UGACG...UUG-3'\n______________UUGC______GAACAUAACGACGCA\n______________||||______:||||:|||:||:||\n______________AACG______UUUGUGUUGUUGUGU\n3'-UUU...UGGUU_________________________UGUAG...UCA-5'\n_____________|_________________________|\n_____________86________________________55\n |
195 -- 201 |
74 -- 80 |
-20.7575 kcal/mol |
3.67756 kcal/mol |
3.73922 kcal/mol |
268 299@LB@ | |@LB@5'-GUU...CCGCU UUACUG UGACG...UUG-3'@LB@ UUGC GAACAUAACGACGCA@LB@ |||| :||||:|||:||:||@LB@ AACG UUUGUGUUGUUGUGU@LB@3'-UUU...UGGUU UGUAG...UCA-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -20.7575 kcal/mol@LB@Unfolding Energy - mRNA 3.67756 kcal/mol@LB@Unfolding Energy - sRNA 3.73922 kcal/mol@LB@@LB@Position - mRNA 269 -- 298@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 74 -- 80@LB@ |
114 |
0.005594 |
0.1728 |
stm4557 |
holD |
-13.75 |
0.185681 |
35 -- 94 |
141 -- 186 |
DNA polymerase III subunit psi |
|
_____________34_____________________________________________95\n_____________|______________________________________________|\n5'-AGG...AAAUC__________C____CAAGACUUCACUUGC_________A______ACAUG...UUC-3'\n______________AUCACUGUGG_GCAG_______________CGGGGUAAA___GCAG\n______________||||||:|||_:|||_______________|:|||||||___:|||\n______________UAGUGAUACC_UGUC_______________GUCCCAUUU___UGUC\n3'-UUU...GUAAU_______________U_______________________ACA____CUUCA...UCA-5'\n_____________|______________________________________________|\n_____________187____________________________________________140\n |
83 -- 89 |
148 -- 154 |
-31.7183 kcal/mol |
12.8981 kcal/mol |
5.60568 kcal/mol |
34 95@LB@ | |@LB@5'-AGG...AAAUC C CAAGACUUCACUUGC A ACAUG...UUC-3'@LB@ AUCACUGUGG GCAG CGGGGUAAA GCAG@LB@ ||||||:||| :||| |:||||||| :|||@LB@ UAGUGAUACC UGUC GUCCCAUUU UGUC@LB@3'-UUU...GUAAU U ACA CUUCA...UCA-5'@LB@ | |@LB@ 187 140@LB@@LB@@LB@Energy -13.75 kcal/mol@LB@Hybridization Energy -31.7183 kcal/mol@LB@Unfolding Energy - mRNA 12.8981 kcal/mol@LB@Unfolding Energy - sRNA 5.60568 kcal/mol@LB@@LB@Position - mRNA 35 -- 94@LB@Position - sRNA 141 -- 186@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 148 -- 154@LB@ |
115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
116 |
0.005629 |
0.1728 |
stm2662 |
rluD |
-17.46 |
0.046576 |
204 -- 257 |
36 -- 86 |
23S rRNA pseudouridine(1911/1915/1917) synthase |
|
_____________203____________________258\n_____________|______________________|\n5'-UGA...UAUAU__________G___________CGCAA...GUU-3'\n______________GGCACAACGA_UACAAC_UCAC\n______________::||||||:|_:|||||_||||\n______________UUGUGUUGUU_GUGUUG_AGUG\n3'-UUU...AACGU_________________U____UUGGC...UCA-5'\n_____________|______________________|\n_____________87_____________________35\n |
206 -- 212 |
78 -- 84 |
-22.2469 kcal/mol |
4.97176 kcal/mol |
5.3513 kcal/mol |
203 258@LB@ | |@LB@5'-UGA...UAUAU G CGCAA...GUU-3'@LB@ GGCACAACGA UACAAC UCAC@LB@ ::||||||:| :||||| ||||@LB@ UUGUGUUGUU GUGUUG AGUG@LB@3'-UUU...AACGU U UUGGC...UCA-5'@LB@ | |@LB@ 87 35@LB@@LB@@LB@Energy -17.46 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 4.97176 kcal/mol@LB@Unfolding Energy - sRNA 5.3513 kcal/mol@LB@@LB@Position - mRNA 204 -- 257@LB@Position - sRNA 36 -- 86@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 78 -- 84@LB@ |
117 |
0.005749 |
0.1738 |
stm2562 |
yfhA |
-19.31 |
0.022783 |
16 -- 66 |
47 -- 100 |
two-component system response regulator GlrR |
|
_____________15____________67\n_____________|_____________|\n5'-CUG...AGGCC_____________UCGAU...UCG-3'\n______________UUGCAAACGCAGC\n______________||||||||:||:|\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________101___________46\n |
28 -- 34 |
80 -- 86 |
-18.759 kcal/mol |
3.6583 kcal/mol |
3.5889 kcal/mol |
15 67@LB@ | |@LB@5'-CUG...AGGCC UCGAU...UCG-3'@LB@ UUGCAAACGCAGC@LB@ ||||||||:||:|@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 101 46@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -18.759 kcal/mol@LB@Unfolding Energy - mRNA 3.6583 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 47 -- 100@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 80 -- 86@LB@ |
118 |
0.005761 |
0.1738 |
stm1840 |
yobG |
-17.14 |
0.052758 |
234 -- 267 |
153 -- 188 |
PhoP regulon feedback inhibition protein MgrB |
|
_____________233____________________________________________________________________________________268\n_____________|______________________________________________________________________________________|\n5'-ACA...AGAGU___________AUUUCGAU____C_U_____GC________GGUA______U___U_____UGU________GUGUU_________GUGCG...AAU-3'\n______________GGAGUGAAAAA________GGGU_G_UCUCG__AUCGUGGU_______GUA_GCC_GUUGC___GGGCGCAG_____UAAUAUCAU\n______________|:|||||||||________||||_|_|||||__|:||||||_______|:|_:||_:||||___:::|:||:_____:||:||||:\n______________CUUCACUUUUU________CCCA_C_AGAGC__UGGCACCA_______CGU_UGG_UAACG___UUUGUGUU_____GUUGUAGUG\n3'-UUU...AUGUC_______________________U_______GA________GACUUAG___C___U________________GUUGU_________UUGGC...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________189____________________________________________________________________________________152\n |
274 -- 280 |
67 -- 73 |
-62.0847 kcal/mol |
28.922 kcal/mol |
22.0106 kcal/mol |
233 268@LB@ | |@LB@5'-ACA...AGAGU AUUUCGAU C U GC GGUA U U UGU GUGUU GUGCG...AAU-3'@LB@ GGAGUGAAAAA GGGU G UCUCG AUCGUGGU GUA GCC GUUGC GGGCGCAG UAAUAUCAU@LB@ |:||||||||| |||| | ||||| |:|||||| |:| :|| :|||| :::|:||: :||:||||:@LB@ CUUCACUUUUU CCCA C AGAGC UGGCACCA CGU UGG UAACG UUUGUGUU GUUGUAGUG@LB@3'-UUU...AUGUC U GA GACUUAG C U GUUGU UUGGC...UCA-5'@LB@ | |@LB@ 189 152@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -62.0847 kcal/mol@LB@Unfolding Energy - mRNA 28.922 kcal/mol@LB@Unfolding Energy - sRNA 22.0106 kcal/mol@LB@@LB@Position - mRNA 234 -- 267@LB@Position - sRNA 153 -- 188@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 67 -- 73@LB@ |
119 |
0.005831 |
0.1745 |
stm1998 |
umuD |
-19.31 |
0.022806 |
33 -- 72 |
46 -- 81 |
DNA polymerase V subunit UmuD |
|
_____________32___________________73\n_____________|____________________|\n5'-AGA...AAAUA____C_______________CGGAA...ACA-3'\n______________UGCG_ACAUGACAAUACAAC\n______________|||:_|||::||||:|||||\n______________ACGU_UGUGUUGUUGUGUUG\n3'-UUU...GGUUA____U_______________UAGUG...UCA-5'\n_____________|____________________|\n_____________82___________________45\n |
45 -- 51 |
72 -- 78 |
-23.5929 kcal/mol |
1.21213 kcal/mol |
3.80548 kcal/mol |
32 73@LB@ | |@LB@5'-AGA...AAAUA C CGGAA...ACA-3'@LB@ UGCG ACAUGACAAUACAAC@LB@ |||: |||::||||:|||||@LB@ ACGU UGUGUUGUUGUGUUG@LB@3'-UUU...GGUUA U UAGUG...UCA-5'@LB@ | |@LB@ 82 45@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -23.5929 kcal/mol@LB@Unfolding Energy - mRNA 1.21213 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 33 -- 72@LB@Position - sRNA 46 -- 81@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 72 -- 78@LB@ |
120 |
0.006002 |
0.1758 |
stm2925 |
nlpD |
-17.26 |
0.050371 |
258 -- 274 |
153 -- 170 |
lipoprotein NlpD |
|
_____________257________________275\n_____________|__________________|\n5'-GUU...UGGUU___________U______UUGUA...CGG-3'\n______________UCACUAUGG_C_GGCAGG\n______________|||||||||_|_|:||||\n______________AGUGAUACC_G_CUGUCC\n3'-UUU...UAAUU_________U_U______CAUUU...UCA-5'\n_____________|__________________|\n_____________171________________152\n |
260 -- 266 |
162 -- 168 |
-24.411 kcal/mol |
4.59255 kcal/mol |
3.4766 kcal/mol |
257 275@LB@ | |@LB@5'-GUU...UGGUU U UUGUA...CGG-3'@LB@ UCACUAUGG C GGCAGG@LB@ ||||||||| | |:||||@LB@ AGUGAUACC G CUGUCC@LB@3'-UUU...UAAUU U U CAUUU...UCA-5'@LB@ | |@LB@ 171 152@LB@@LB@@LB@Energy -17.26 kcal/mol@LB@Hybridization Energy -24.411 kcal/mol@LB@Unfolding Energy - mRNA 4.59255 kcal/mol@LB@Unfolding Energy - sRNA 3.4766 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 153 -- 170@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 162 -- 168@LB@ |