39 |
0.003509 |
0.2912 |
b1293 |
sapB |
-10.75 |
0.197427 |
9 -- 16 |
196 -- 203 |
antimicrobial peptide transport ABC transporter permease |
|
_____________8____________17\n_____________|____________|\n5'-UCG...UAUUU_______CA___GC-3'\n______________CACCCCU__UGC\n______________||||||:__|||\n______________GUGGGGG__ACG\n3'-UUU...ACCCC_______A____AAGUAG-5'\n_____________|____________|\n_____________204__________195\n |
287 -- 293 |
11 -- 17 |
-15.5024 kcal/mol |
0.267702 kcal/mol |
6.55606 kcal/mol |
8 17@LB@ | |@LB@5'-UCG...UAUUU CA GC-3'@LB@ CACCCCU UGC@LB@ ||||||: |||@LB@ GUGGGGG ACG@LB@3'-UUU...ACCCC A AAGUAG-5'@LB@ | |@LB@ 204 195@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.5024 kcal/mol@LB@Unfolding Energy - mRNA 0.267702 kcal/mol@LB@Unfolding Energy - sRNA 6.55606 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 196 -- 203@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 11 -- 17@LB@ |
82 |
0.008839 |
0.3575 |
b3680 |
yidL |
-8.33 |
0.532337 |
91 -- 113 |
142 -- 164 |
AraC family putative transcriptional regulator |
|
_____________90________________114\n_____________|_________________|\n5'-AAC...UGCGU________GCAG_____UUCUU...UGA-3'\n______________CGGGUCAG____UCAGA\n______________|::||||:____|||||\n______________GUUCAGUU____AGUCU\n3'-UUU...CGUCC________GAA______UAACG...UAG-5'\n_____________|_________________|\n_____________165_______________141\n |
97 -- 103 |
151 -- 157 |
-14.3717 kcal/mol |
4.36777 kcal/mol |
4.37859 kcal/mol |
90 114@LB@ | |@LB@5'-AAC...UGCGU GCAG UUCUU...UGA-3'@LB@ CGGGUCAG UCAGA@LB@ |::||||: |||||@LB@ GUUCAGUU AGUCU@LB@3'-UUU...CGUCC GAA UAACG...UAG-5'@LB@ | |@LB@ 165 141@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -14.3717 kcal/mol@LB@Unfolding Energy - mRNA 4.36777 kcal/mol@LB@Unfolding Energy - sRNA 4.37859 kcal/mol@LB@@LB@Position - mRNA 91 -- 113@LB@Position - sRNA 142 -- 164@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 151 -- 157@LB@ |
178 |
0.02044 |
0.3833 |
b3433 |
asd |
-8.72 |
0.462346 |
170 -- 185 |
58 -- 71 |
aspartate-semialdehyde dehydrogenase NAD(P)-binding |
|
_____________169__________________186\n_____________|____________________|\n5'-UCA...UUAUA___________CUU______AAAAA...UCU-3'\n______________CAG_CACACAU___UGCAGG\n______________|||_|||||||___||||||\n______________GUC_GUGUGUA___ACGUCC\n3'-UUU...UAUGA___A_______CU_______GUUCA...UAG-5'\n_____________|____________________|\n_____________72___________________57\n |
173 -- 179 |
166 -- 172 |
-22.5694 kcal/mol |
4.04779 kcal/mol |
7.34152 kcal/mol |
169 186@LB@ | |@LB@5'-UCA...UUAUA CUU AAAAA...UCU-3'@LB@ CAG CACACAU UGCAGG@LB@ ||| ||||||| ||||||@LB@ GUC GUGUGUA ACGUCC@LB@3'-UUU...UAUGA A CU GUUCA...UAG-5'@LB@ | |@LB@ 72 57@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -22.5694 kcal/mol@LB@Unfolding Energy - mRNA 4.04779 kcal/mol@LB@Unfolding Energy - sRNA 7.34152 kcal/mol@LB@@LB@Position - mRNA 170 -- 185@LB@Position - sRNA 58 -- 71@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 166 -- 172@LB@ |
133 |
0.01432 |
0.3575 |
b2342 |
fadI |
-11.00 |
0.176527 |
78 -- 109 |
125 -- 153 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________77________________________________110\n_____________|_________________________________|\n5'-UCC...UCUCU__UU_____CUCUC________UAGC_______UUCCC...AUG-3'\n______________UC__CUUUU_____UGU_GUCA____UCCCACU\n______________||__||||:_____||:_||||____|||||||\n______________AG__GAAAG_____ACG_CAGU____AGGGUGA\n3'-UUU...CGUUC__UU_____UCUUA___C_______________CGUAG...UAG-5'\n_____________|_________________________________|\n_____________154_______________________________124\n |
103 -- 109 |
125 -- 131 |
-19.0317 kcal/mol |
1.6674 kcal/mol |
9.91012 kcal/mol |
77 110@LB@ | |@LB@5'-UCC...UCUCU UU CUCUC UAGC UUCCC...AUG-3'@LB@ UC CUUUU UGU GUCA UCCCACU@LB@ || ||||: ||: |||| |||||||@LB@ AG GAAAG ACG CAGU AGGGUGA@LB@3'-UUU...CGUUC UU UCUUA C CGUAG...UAG-5'@LB@ | |@LB@ 154 124@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0317 kcal/mol@LB@Unfolding Energy - mRNA 1.6674 kcal/mol@LB@Unfolding Energy - sRNA 9.91012 kcal/mol@LB@@LB@Position - mRNA 78 -- 109@LB@Position - sRNA 125 -- 153@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 125 -- 131@LB@ |
32 |
0.002513 |
0.2642 |
b3456 |
livM |
-11.89 |
0.117100 |
251 -- 271 |
186 -- 206 |
branched-chain amino acid ABC transporter permease |
|
_____________250___________________________272\n_____________|_____________________________|\n5'-GCC...CUGCU______GCCG___________UG______CCGGA...CCA-3'\n______________GGUGAU_____ACCGGUAUUC__GGUCGC\n______________||||||_____|||::||:||__:|||:|\n______________CCACUA_____UGGUUAUGAG__UCAGUG\n3'-UUU...ACCGC______AAAUG__________________UGUAC...UAG-5'\n_____________|_____________________________|\n_____________207___________________________185\n |
169 -- 175 |
176 -- 182 |
-27.5836 kcal/mol |
14.0763 kcal/mol |
5.03772 kcal/mol |
250 272@LB@ | |@LB@5'-GCC...CUGCU GCCG UG CCGGA...CCA-3'@LB@ GGUGAU ACCGGUAUUC GGUCGC@LB@ |||||| |||::||:|| :|||:|@LB@ CCACUA UGGUUAUGAG UCAGUG@LB@3'-UUU...ACCGC AAAUG UGUAC...UAG-5'@LB@ | |@LB@ 207 185@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -27.5836 kcal/mol@LB@Unfolding Energy - mRNA 14.0763 kcal/mol@LB@Unfolding Energy - sRNA 5.03772 kcal/mol@LB@@LB@Position - mRNA 251 -- 271@LB@Position - sRNA 186 -- 206@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 176 -- 182@LB@ |
126 |
0.01383 |
0.3575 |
b1843 |
yobB |
-8.48 |
0.503741 |
101 -- 118 |
168 -- 185 |
C-N hydrolase family protein |
|
_____________100____________119\n_____________|______________|\n5'-CCU...AACUU____AG________UUUCU...CCA-3'\n______________AUAC__AGUUACAC\n______________||||__|||:||||\n______________UAUG__UCAGUGUG\n3'-UUU...GUGGU____AG________UACUA...UAG-5'\n_____________|______________|\n_____________186____________167\n |
112 -- 118 |
168 -- 174 |
-13.9608 kcal/mol |
3.09724 kcal/mol |
0.286881 kcal/mol |
100 119@LB@ | |@LB@5'-CCU...AACUU AG UUUCU...CCA-3'@LB@ AUAC AGUUACAC@LB@ |||| |||:||||@LB@ UAUG UCAGUGUG@LB@3'-UUU...GUGGU AG UACUA...UAG-5'@LB@ | |@LB@ 186 167@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -13.9608 kcal/mol@LB@Unfolding Energy - mRNA 3.09724 kcal/mol@LB@Unfolding Energy - sRNA 0.286881 kcal/mol@LB@@LB@Position - mRNA 101 -- 118@LB@Position - sRNA 168 -- 185@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 168 -- 174@LB@ |
157 |
0.01768 |
0.3749 |
b1216 |
chaA |
-11.60 |
0.134178 |
242 -- 292 |
18 -- 65 |
calcium/sodium:proton antiporter |
|
_____________241_______________293\n_____________|_________________|\n5'-AUU...AAUGU_________C___A___UUUCU...GCC-3'\n______________UACCGAUAU_CAG_CAC\n______________:|||:|||:_|||_|||\n______________GUGGUUAUG_GUC_GUG\n3'-UUU...AAAAU_________A___A___UGUAC...UAG-5'\n_____________|_________________|\n_____________66________________17\n |
120 -- 126 |
178 -- 184 |
-16.2011 kcal/mol |
3.68451 kcal/mol |
4.86651 kcal/mol |
241 293@LB@ | |@LB@5'-AUU...AAUGU C A UUUCU...GCC-3'@LB@ UACCGAUAU CAG CAC@LB@ :|||:|||: ||| |||@LB@ GUGGUUAUG GUC GUG@LB@3'-UUU...AAAAU A A UGUAC...UAG-5'@LB@ | |@LB@ 66 17@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.2011 kcal/mol@LB@Unfolding Energy - mRNA 3.68451 kcal/mol@LB@Unfolding Energy - sRNA 4.86651 kcal/mol@LB@@LB@Position - mRNA 242 -- 292@LB@Position - sRNA 18 -- 65@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 178 -- 184@LB@ |
188 |
0.0218 |
0.3833 |
b3357 |
crp |
-15.41 |
0.022266 |
196 -- 257 |
123 -- 172 |
cAMP-activated global transcription factor mediator of catabolite repression |
|
_____________195_________________258\n_____________|___________________|\n5'-GAC...AUAAC____________UU_____ACCGC...AGG-3'\n______________CGCGCAUGGUGC__GGCAA\n______________|:|:||||:|||__|||||\n______________GUGUGUACUACG__CCGUU\n3'-UUU...AGUCA____________U______CAGUU...UAG-5'\n_____________|___________________|\n_____________173_________________122\n |
201 -- 207 |
161 -- 167 |
-26.7729 kcal/mol |
8.17538 kcal/mol |
7.52835 kcal/mol |
195 258@LB@ | |@LB@5'-GAC...AUAAC UU ACCGC...AGG-3'@LB@ CGCGCAUGGUGC GGCAA@LB@ |:|:||||:||| |||||@LB@ GUGUGUACUACG CCGUU@LB@3'-UUU...AGUCA U CAGUU...UAG-5'@LB@ | |@LB@ 173 122@LB@@LB@@LB@Energy -15.41 kcal/mol@LB@Hybridization Energy -26.7729 kcal/mol@LB@Unfolding Energy - mRNA 8.17538 kcal/mol@LB@Unfolding Energy - sRNA 7.52835 kcal/mol@LB@@LB@Position - mRNA 196 -- 257@LB@Position - sRNA 123 -- 172@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 161 -- 167@LB@ |
177 |
0.02028 |
0.3833 |
b1732 |
katE |
-12.45 |
0.090323 |
227 -- 246 |
168 -- 187 |
catalase HPII heme d-containing |
|
_____________226___________________247\n_____________|_____________________|\n5'-UGG...AACCC_______C__________C__UACAC...ACG-3'\n______________ACAUCAG_AC_CAGUCAC_AC\n______________|||:||:_||_|||||||_||\n______________UGUGGUU_UG_GUCAGUG_UG\n3'-UUU...UAAAA_______A__A__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
237 -- 243 |
170 -- 176 |
-19.9766 kcal/mol |
1.23864 kcal/mol |
4.88067 kcal/mol |
226 247@LB@ | |@LB@5'-UGG...AACCC C C UACAC...ACG-3'@LB@ ACAUCAG AC CAGUCAC AC@LB@ |||:||: || ||||||| ||@LB@ UGUGGUU UG GUCAGUG UG@LB@3'-UUU...UAAAA A A UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -19.9766 kcal/mol@LB@Unfolding Energy - mRNA 1.23864 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 227 -- 246@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 170 -- 176@LB@ |
101 |
0.01097 |
0.3575 |
b1882 |
cheY |
-8.64 |
0.475467 |
226 -- 255 |
72 -- 99 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________225_______________256\n_____________|_________________|\n5'-GCG...AGGCG_______GGA_______GCAAA...UUG-3'\n______________GGGGCAU___CCCUUGC\n______________||||||:___|||||||\n______________CCCCGUG___GGGAACG\n3'-UUU...GCGUA_______G_________AAGUAG-5'\n_____________|_________________|\n_____________100_______________71\n |
38 -- 44 |
7 -- 13 |
-25.3164 kcal/mol |
8.48869 kcal/mol |
10.1447 kcal/mol |
225 256@LB@ | |@LB@5'-GCG...AGGCG GGA GCAAA...UUG-3'@LB@ GGGGCAU CCCUUGC@LB@ ||||||: |||||||@LB@ CCCCGUG GGGAACG@LB@3'-UUU...GCGUA G AAGUAG-5'@LB@ | |@LB@ 100 71@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -25.3164 kcal/mol@LB@Unfolding Energy - mRNA 8.48869 kcal/mol@LB@Unfolding Energy - sRNA 10.1447 kcal/mol@LB@@LB@Position - mRNA 226 -- 255@LB@Position - sRNA 72 -- 99@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 7 -- 13@LB@ |