| 5 |
0.0001254 |
0.08442 |
b4481 |
wecF |
-11.27 |
0.155862 |
165 -- 206 |
62 -- 99 |
TDP-Fuc4NAc:lipidIIFuc4NAc transferase |
|
_____________164_____________________________________207\n_____________|_______________________________________|\n5'-UUU...GCGUC___G_____U_____UC__GC___________CAG____CUUUA...ACG-3'\n______________ACU_CGGUU_UAUAU__UG__GG_AAGUCAGC___UUCA\n______________|||_|:||:_:|:||__||__||_||||||:|___||||\n______________UGA_GUCAG_GUGUA__AC__CC_UUCAGUUG___AAGU\n3'-UUU...GGUUA_________U_____CU__GU__G________A______CUUAA...UAG-5'\n_____________|_______________________________________|\n_____________100_____________________________________61\n |
54 -- 60 |
149 -- 155 |
-25.8626 kcal/mol |
10.7241 kcal/mol |
8.38318 kcal/mol |
164 207@LB@ | |@LB@5'-UUU...GCGUC G U UC GC CAG CUUUA...ACG-3'@LB@ ACU CGGUU UAUAU UG GG AAGUCAGC UUCA@LB@ ||| |:||: :|:|| || || ||||||:| ||||@LB@ UGA GUCAG GUGUA AC CC UUCAGUUG AAGU@LB@3'-UUU...GGUUA U CU GU G A CUUAA...UAG-5'@LB@ | |@LB@ 100 61@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -25.8626 kcal/mol@LB@Unfolding Energy - mRNA 10.7241 kcal/mol@LB@Unfolding Energy - sRNA 8.38318 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 62 -- 99@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 114 |
0.01268 |
0.3575 |
b0888 |
trxB |
-13.24 |
0.061992 |
5 -- 14 |
83 -- 92 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________4__________15\n_____________|__________|\n_______5'-AACA__________UUCAU...UGC-3'\n______________GGGGCGUUUA\n______________|||:||:|||\n______________CCCUGCGAAU\n3'-UUU...CAACA__________UGGUU...UAG-5'\n_____________|__________|\n_____________93_________82\n |
7 -- 13 |
84 -- 90 |
-15.9307 kcal/mol |
0.512019 kcal/mol |
6.69187 kcal/mol |
4 15@LB@ | |@LB@ 5'-AACA UUCAU...UGC-3'@LB@ GGGGCGUUUA@LB@ |||:||:|||@LB@ CCCUGCGAAU@LB@3'-UUU...CAACA UGGUU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -15.9307 kcal/mol@LB@Unfolding Energy - mRNA 0.512019 kcal/mol@LB@Unfolding Energy - sRNA 6.69187 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 194 |
0.02283 |
0.3833 |
b3823 |
rhtC |
-9.67 |
0.316154 |
216 -- 300 |
113 -- 178 |
threonine efflux pump |
|
_____________215___________________301\n_____________|_____________________|\n5'-AGA...UAUUU____CC_______________CAUUG...GUU-3'\n______________CUCA__GUCGC_CAUGGUGCA\n______________||||__|||:|_||||:||||\n______________GAGU__CAGUG_GUACUACGU\n3'-UUU...GUUAU___________U_________CCGUU...UAG-5'\n_____________|_____________________|\n_____________179___________________112\n |
228 -- 234 |
161 -- 167 |
-23.3741 kcal/mol |
7.13181 kcal/mol |
4.79874 kcal/mol |
215 301@LB@ | |@LB@5'-AGA...UAUUU CC CAUUG...GUU-3'@LB@ CUCA GUCGC CAUGGUGCA@LB@ |||| |||:| ||||:||||@LB@ GAGU CAGUG GUACUACGU@LB@3'-UUU...GUUAU U CCGUU...UAG-5'@LB@ | |@LB@ 179 112@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -23.3741 kcal/mol@LB@Unfolding Energy - mRNA 7.13181 kcal/mol@LB@Unfolding Energy - sRNA 4.79874 kcal/mol@LB@@LB@Position - mRNA 216 -- 300@LB@Position - sRNA 113 -- 178@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 161 -- 167@LB@ |
| 125 |
0.01377 |
0.3575 |
b2827 |
thyA |
-14.98 |
0.027366 |
100 -- 109 |
16 -- 25 |
thymidylate synthetase |
|
_____________99_____________________110\n_____________|______________________|\n5'-CAG...AAACA________A_____________AAAAG...AGA-3'\n______________GUAUUUAG__AC___UGAUGCA\n______________:||:|:||__||___|||||||\n______________UAUGAGUC__UG___ACUACGU\n3'-UUU...GUGGU________AG__UGU_______CCGUU...UAG-5'\n_____________|______________________|\n_____________26_____________________15\n |
220 -- 226 |
160 -- 166 |
-15.3976 kcal/mol |
3.04146 kcal/mol |
4.80633 kcal/mol |
99 110@LB@ | |@LB@5'-CAG...AAACA A AAAAG...AGA-3'@LB@ GUAUUUAG AC UGAUGCA@LB@ :||:|:|| || |||||||@LB@ UAUGAGUC UG ACUACGU@LB@3'-UUU...GUGGU AG UGU CCGUU...UAG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -15.3976 kcal/mol@LB@Unfolding Energy - mRNA 3.04146 kcal/mol@LB@Unfolding Energy - sRNA 4.80633 kcal/mol@LB@@LB@Position - mRNA 100 -- 109@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 28 |
0.002284 |
0.2633 |
b1114 |
mfd |
-18.81 |
0.004608 |
253 -- 297 |
50 -- 95 |
transcription-repair coupling factor |
|
_____________252______________298\n_____________|________________|\n5'-UUC...GCGUC___U____________CGGCG...AAA-3'\n______________UGC_GGGCGAGUUAAC\n______________|||_:|||:|||:|||\n______________ACG_UCCGUUCAGUUG\n3'-UUU...GUACU________________AAAGU...UAG-5'\n_____________|________________|\n_____________96_______________49\n |
262 -- 268 |
149 -- 155 |
-20.6961 kcal/mol |
4.60584 kcal/mol |
7.12854 kcal/mol |
252 298@LB@ | |@LB@5'-UUC...GCGUC U CGGCG...AAA-3'@LB@ UGC GGGCGAGUUAAC@LB@ ||| :|||:|||:|||@LB@ ACG UCCGUUCAGUUG@LB@3'-UUU...GUACU AAAGU...UAG-5'@LB@ | |@LB@ 96 49@LB@@LB@@LB@Energy -18.81 kcal/mol@LB@Hybridization Energy -20.6961 kcal/mol@LB@Unfolding Energy - mRNA 4.60584 kcal/mol@LB@Unfolding Energy - sRNA 7.12854 kcal/mol@LB@@LB@Position - mRNA 253 -- 297@LB@Position - sRNA 50 -- 95@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 1 |
0 |
0 |
b0069 |
sgrR |
-186.00 |
0.000000 |
1 -- 133 |
1 -- 133 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
______________1____________________________________________________________________________________________________________________________________134\n______________|____________________________________________________________________________________________________________________________________|\n___________5'-_____________________________________________________________________________________________________________________________________GUUAG...UGA-3'\n______________CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG\n3'-UUU...CGCCA_____________________________________________________________________________________________________________________________________-5'\n_____________|____________________________________________________________________________________________________________________________________|\n_____________134__________________________________________________________________________________________________________________________________1\n |
127 -- 133 |
1 -- 7 |
-280.35 kcal/mol |
42.3709 kcal/mol |
58.1542 kcal/mol |
1 134@LB@ | |@LB@ 5'- GUUAG...UGA-3'@LB@ CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG@LB@3'-UUU...CGCCA -5'@LB@ | |@LB@ 134 1@LB@@LB@@LB@Energy -186.00 kcal/mol@LB@Hybridization Energy -280.35 kcal/mol@LB@Unfolding Energy - mRNA 42.3709 kcal/mol@LB@Unfolding Energy - sRNA 58.1542 kcal/mol@LB@@LB@Position - mRNA 1 -- 133@LB@Position - sRNA 1 -- 133@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 191 |
0.02237 |
0.3833 |
b1658 |
purR |
-11.05 |
0.172432 |
254 -- 265 |
163 -- 174 |
transcriptional repressor hypoxanthine-binding |
|
_____________253_______________266\n_____________|_________________|\n5'-UUU...CUACA___GU____________CAACA...GCA-3'\n______________ACU__GUCACACGUGAU\n______________|||__|||||||:||||\n______________UGA__CAGUGUGUACUA\n3'-UUU...GGUUA___GU____________CGUCC...UAG-5'\n_____________|_________________|\n_____________175_______________162\n |
259 -- 265 |
163 -- 169 |
-20.3148 kcal/mol |
3.57431 kcal/mol |
4.30742 kcal/mol |
253 266@LB@ | |@LB@5'-UUU...CUACA GU CAACA...GCA-3'@LB@ ACU GUCACACGUGAU@LB@ ||| |||||||:||||@LB@ UGA CAGUGUGUACUA@LB@3'-UUU...GGUUA GU CGUCC...UAG-5'@LB@ | |@LB@ 175 162@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -20.3148 kcal/mol@LB@Unfolding Energy - mRNA 3.57431 kcal/mol@LB@Unfolding Energy - sRNA 4.30742 kcal/mol@LB@@LB@Position - mRNA 254 -- 265@LB@Position - sRNA 163 -- 174@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 112 |
0.01232 |
0.3575 |
b1540 |
rspR |
-15.19 |
0.024761 |
13 -- 44 |
171 -- 202 |
transcriptional repressor for rspAB |
|
_____________12_________________________________________________________45\n_____________|__________________________________________________________|\n5'-CAG...GCCGU__________UCA_______GCC______C___A____CAAUACCCUGGAA_______CGGUU...GCA-3'\n______________CUGGUGGGUG_____ACGCU___UGCUCA_GUC_AUAU_____________AUGAUGC\n______________||||:|||||_____||:|:___|:||||_|||_|:|:_____________|||||||\n______________GACCGCCCAC_____UGUGG___AUGAGU_CAG_UGUG_____________UACUACG\n3'-UUU...UAGAC__________UAAAA_____UU____________________________________UCCGU...UAG-5'\n_____________|__________________________________________________________|\n_____________203________________________________________________________170\n |
62 -- 68 |
161 -- 167 |
-40.6001 kcal/mol |
15.8189 kcal/mol |
17.3482 kcal/mol |
12 45@LB@ | |@LB@5'-CAG...GCCGU UCA GCC C A CAAUACCCUGGAA CGGUU...GCA-3'@LB@ CUGGUGGGUG ACGCU UGCUCA GUC AUAU AUGAUGC@LB@ ||||:||||| ||:|: |:|||| ||| |:|: |||||||@LB@ GACCGCCCAC UGUGG AUGAGU CAG UGUG UACUACG@LB@3'-UUU...UAGAC UAAAA UU UCCGU...UAG-5'@LB@ | |@LB@ 203 170@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -40.6001 kcal/mol@LB@Unfolding Energy - mRNA 15.8189 kcal/mol@LB@Unfolding Energy - sRNA 17.3482 kcal/mol@LB@@LB@Position - mRNA 13 -- 44@LB@Position - sRNA 171 -- 202@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 161 -- 167@LB@ |
| 70 |
0.00686 |
0.3298 |
b0761 |
modE |
-10.05 |
0.269682 |
248 -- 271 |
57 -- 77 |
transcriptional repressor for the molybdenum transport operon modABC |
|
_____________247______272\n_____________|________|\n5'-ACC...GAAAA________CUUUU...CCA-3'\n______________GCACUCCC\n______________||||:|||\n______________CGUGGGGG\n3'-UUU...UACCC________AACGA...UAG-5'\n_____________|________|\n_____________78_______56\n |
126 -- 132 |
11 -- 17 |
-14.7879 kcal/mol |
0.633098 kcal/mol |
5.13224 kcal/mol |
247 272@LB@ | |@LB@5'-ACC...GAAAA CUUUU...CCA-3'@LB@ GCACUCCC@LB@ ||||:|||@LB@ CGUGGGGG@LB@3'-UUU...UACCC AACGA...UAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -14.7879 kcal/mol@LB@Unfolding Energy - mRNA 0.633098 kcal/mol@LB@Unfolding Energy - sRNA 5.13224 kcal/mol@LB@@LB@Position - mRNA 248 -- 271@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 40 |
0.003515 |
0.2912 |
b0188 |
tilS |
-11.97 |
0.112782 |
278 -- 295 |
116 -- 133 |
tRNA(Ile)-lysidine synthetase |
|
______________278__________________296\n______________|____________________|\n___________5'-_________GG____G_____CCUUG...UGC-3'\n______________CAUCGAUGC__CAGU_GCGCA\n______________||:|:||:|__||||_:|:||\n______________GUGGUUAUG__GUCA_UGUGU\n3'-UUU...AAAAU_________A_____G_____ACUAC...UAG-5'\n_____________|_____________________|\n_____________134___________________115\n |
3 -- 9 |
178 -- 184 |
-23.3684 kcal/mol |
8.15392 kcal/mol |
5.05466 kcal/mol |
278 296@LB@ | |@LB@ 5'- GG G CCUUG...UGC-3'@LB@ CAUCGAUGC CAGU GCGCA@LB@ ||:|:||:| |||| :|:||@LB@ GUGGUUAUG GUCA UGUGU@LB@3'-UUU...AAAAU A G ACUAC...UAG-5'@LB@ | |@LB@ 134 115@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3684 kcal/mol@LB@Unfolding Energy - mRNA 8.15392 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 278 -- 295@LB@Position - sRNA 116 -- 133@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 178 -- 184@LB@ |
