| 111 |
0.0122 |
0.3575 |
b1813 |
nudL |
-9.44 |
0.347588 |
99 -- 131 |
174 -- 206 |
putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase |
|
_____________98________________________________132\n_____________|_________________________________|\n5'-CCU...UCUGC_____G_____UG__A__GU________GC___GAAGA...CUG-3'\n______________UCUGC_GGCGG__GA_UU__CGCCGAUA__CAG\n______________|||||_|||||__||_||__|:||:|||__|||\n______________AGACG_CCGCC__CU_AA__GUGGUUAU__GUC\n3'-UUU...AUAUU_____A_____CA__A__AU________GA___AGUGU...UAG-5'\n_____________|_________________________________|\n_____________207_______________________________173\n |
120 -- 126 |
179 -- 185 |
-36.2385 kcal/mol |
15.3331 kcal/mol |
14.8345 kcal/mol |
98 132@LB@ | |@LB@5'-CCU...UCUGC G UG A GU GC GAAGA...CUG-3'@LB@ UCUGC GGCGG GA UU CGCCGAUA CAG@LB@ ||||| ||||| || || |:||:||| |||@LB@ AGACG CCGCC CU AA GUGGUUAU GUC@LB@3'-UUU...AUAUU A CA A AU GA AGUGU...UAG-5'@LB@ | |@LB@ 207 173@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -36.2385 kcal/mol@LB@Unfolding Energy - mRNA 15.3331 kcal/mol@LB@Unfolding Energy - sRNA 14.8345 kcal/mol@LB@@LB@Position - mRNA 99 -- 131@LB@Position - sRNA 174 -- 206@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 179 -- 185@LB@ |
| 119 |
0.013 |
0.3575 |
b0801 |
ybiC |
-16.26 |
0.015008 |
158 -- 253 |
108 -- 187 |
putative dehydrogenase |
|
_____________157____________________________________________________________________________________________254\n_____________|______________________________________________________________________________________________|\n5'-GCU...AUAAA_____AA__AA______ACAUAAA_____________CAU_____A__________G_UUUGAUGCUCAGAC_____________UA_______UGUAU...UUG-3'\n______________AAUAC__CA__CACAUA_______CAGG__AGUUAAC____GGAA__GUGGUCAUC_C______________GCUGCA_CAGUUU__UUCAGGC\n______________|||||__||__||||:|_______||||__|||:|||____:|||__|:|||||||_|______________:|||||_||||::__||||:||\n______________UUAUG__GU__GUGUGU_______GUCC__UCAGUUG____UCUU__CGCCAGUAG_G______________UGACGU_GUCAGG__AAGUUCG\n3'-UUU...UGUGG_____A___CA______ACUAC______GU_______AAAG____AA_________G_____________________A_______________UACCA...UAG-5'\n_____________|______________________________________________________________________________________________|\n_____________188____________________________________________________________________________________________107\n |
247 -- 253 |
108 -- 114 |
-56.5044 kcal/mol |
18.8914 kcal/mol |
26.5178 kcal/mol |
157 254@LB@ | |@LB@5'-GCU...AUAAA AA AA ACAUAAA CAU A G UUUGAUGCUCAGAC UA UGUAU...UUG-3'@LB@ AAUAC CA CACAUA CAGG AGUUAAC GGAA GUGGUCAUC C GCUGCA CAGUUU UUCAGGC@LB@ ||||| || ||||:| |||| |||:||| :||| |:||||||| | :||||| ||||:: ||||:||@LB@ UUAUG GU GUGUGU GUCC UCAGUUG UCUU CGCCAGUAG G UGACGU GUCAGG AAGUUCG@LB@3'-UUU...UGUGG A CA ACUAC GU AAAG AA G A UACCA...UAG-5'@LB@ | |@LB@ 188 107@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -56.5044 kcal/mol@LB@Unfolding Energy - mRNA 18.8914 kcal/mol@LB@Unfolding Energy - sRNA 26.5178 kcal/mol@LB@@LB@Position - mRNA 158 -- 253@LB@Position - sRNA 108 -- 187@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 108 -- 114@LB@ |
| 192 |
0.02246 |
0.3833 |
b4340 |
yjiR |
-11.68 |
0.128907 |
36 -- 62 |
126 -- 153 |
putative DNA-binding transcriptional regulator/putative aminotransferase |
|
_____________35_______63\n_____________|________|\n5'-AGC...CAGAG________AUCCA...GUC-3'\n______________GCUUCAUC\n______________||||||||\n______________CGAAGUAG\n3'-UUU...GGGAA________-5'\n_____________|_______|\n_____________154_____126\n |
50 -- 56 |
1 -- 7 |
-12.7164 kcal/mol |
1.73081 kcal/mol |
0.703102 kcal/mol |
35 63@LB@ | |@LB@5'-AGC...CAGAG AUCCA...GUC-3'@LB@ GCUUCAUC@LB@ ||||||||@LB@ CGAAGUAG@LB@3'-UUU...GGGAA -5'@LB@ | |@LB@ 154 126@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -12.7164 kcal/mol@LB@Unfolding Energy - mRNA 1.73081 kcal/mol@LB@Unfolding Energy - sRNA 0.703102 kcal/mol@LB@@LB@Position - mRNA 36 -- 62@LB@Position - sRNA 126 -- 153@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 104 |
0.01113 |
0.3575 |
b2108 |
yehA |
-14.54 |
0.033608 |
284 -- 300 |
56 -- 72 |
putative fimbrial-like adhesin protein |
|
_____________283_____________300\n_____________|_______________|\n5'-GUU...CUGUU___________G____-3'\n______________CAGCACAACUU_GUUG\n______________|||||||||||_|:||\n______________GUCGUGUUGAA_CGAC\n3'-UUU...CGUUG___________G____AGCGC...UAG-5'\n_____________|________________|\n_____________73_______________55\n |
289 -- 295 |
61 -- 67 |
-24.1215 kcal/mol |
2.36332 kcal/mol |
11.1531 kcal/mol |
283 300@LB@ | |@LB@5'-GUU...CUGUU G -3'@LB@ CAGCACAACUU GUUG@LB@ ||||||||||| |:||@LB@ GUCGUGUUGAA CGAC@LB@3'-UUU...CGUUG G AGCGC...UAG-5'@LB@ | |@LB@ 73 55@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -24.1215 kcal/mol@LB@Unfolding Energy - mRNA 2.36332 kcal/mol@LB@Unfolding Energy - sRNA 11.1531 kcal/mol@LB@@LB@Position - mRNA 284 -- 300@LB@Position - sRNA 56 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 135 |
0.01453 |
0.3575 |
b2934 |
cmtB |
-15.85 |
0.018111 |
229 -- 275 |
145 -- 186 |
putative mannitol-specific enzyme IIA component of PTS |
|
_____________228___________________276\n_____________|_____________________|\n5'-AUA...AGAAU_____________________UCAGC...UGG-3'\n______________CAUCAAU_CUCAGUUAUACAU\n______________||:||||_||||||:|:||||\n______________GUGGUUA_GAGUCAGUGUGUA\n3'-UUU...AAAAU_______U_____________CUACG...UAG-5'\n_____________|_____________________|\n_____________187___________________144\n |
242 -- 248 |
166 -- 172 |
-24.8158 kcal/mol |
1.5387 kcal/mol |
5.06797 kcal/mol |
228 276@LB@ | |@LB@5'-AUA...AGAAU UCAGC...UGG-3'@LB@ CAUCAAU CUCAGUUAUACAU@LB@ ||:|||| ||||||:|:||||@LB@ GUGGUUA GAGUCAGUGUGUA@LB@3'-UUU...AAAAU U CUACG...UAG-5'@LB@ | |@LB@ 187 144@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -24.8158 kcal/mol@LB@Unfolding Energy - mRNA 1.5387 kcal/mol@LB@Unfolding Energy - sRNA 5.06797 kcal/mol@LB@@LB@Position - mRNA 229 -- 275@LB@Position - sRNA 145 -- 186@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 166 -- 172@LB@ |
| 88 |
0.009956 |
0.3575 |
b2672 |
ygaM |
-12.38 |
0.093122 |
193 -- 231 |
56 -- 92 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________192______232\n_____________|________|\n5'-AAC...UGAAC________AGAAA...AGU-3'\n______________CUCAGUUA\n______________||||||:|\n______________GAGUCAGU\n3'-UUU...GUUAU________GUGUA...UAG-5'\n_____________|________|\n_____________93_______55\n |
142 -- 148 |
171 -- 177 |
-10.1878 kcal/mol |
1.87036 kcal/mol |
0.207782 kcal/mol |
192 232@LB@ | |@LB@5'-AAC...UGAAC AGAAA...AGU-3'@LB@ CUCAGUUA@LB@ ||||||:|@LB@ GAGUCAGU@LB@3'-UUU...GUUAU GUGUA...UAG-5'@LB@ | |@LB@ 93 55@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -10.1878 kcal/mol@LB@Unfolding Energy - mRNA 1.87036 kcal/mol@LB@Unfolding Energy - sRNA 0.207782 kcal/mol@LB@@LB@Position - mRNA 193 -- 231@LB@Position - sRNA 56 -- 92@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 171 -- 177@LB@ |
| 175 |
0.0199 |
0.3812 |
b3085 |
ygjP |
-10.42 |
0.228945 |
225 -- 233 |
128 -- 136 |
putative metal dependent hydrolase |
|
_____________224_______234\n_____________|_________|\n5'-AAC...UUCAG_________GAGCA...AAC-3'\n______________GGUUAUCCC\n______________|||:|||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________137_______127\n |
227 -- 233 |
128 -- 134 |
-15.1258 kcal/mol |
2.43348 kcal/mol |
4.55487 kcal/mol |
224 234@LB@ | |@LB@5'-AAC...UUCAG GAGCA...AAC-3'@LB@ GGUUAUCCC@LB@ |||:|||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 137 127@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -15.1258 kcal/mol@LB@Unfolding Energy - mRNA 2.43348 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 225 -- 233@LB@Position - sRNA 128 -- 136@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 128 -- 134@LB@ |
| 36 |
0.002935 |
0.2744 |
b3152 |
yraR |
-13.11 |
0.066158 |
241 -- 255 |
123 -- 138 |
putative nucleoside-diphosphate-sugar epimerase |
|
_____________240______________256\n_____________|________________|\n5'-ACU...GGUGG________________GGAUG...CGA-3'\n______________GCGGUCA_CCUGCUGC\n______________|||||||_||::||||\n______________CGCCAGU_GGGUGACG\n3'-UUU...CUUAA_______A________UAGUC...UAG-5'\n_____________|________________|\n_____________139______________122\n |
241 -- 247 |
132 -- 138 |
-26.7154 kcal/mol |
6.55898 kcal/mol |
13.7588 kcal/mol |
240 256@LB@ | |@LB@5'-ACU...GGUGG GGAUG...CGA-3'@LB@ GCGGUCA CCUGCUGC@LB@ ||||||| ||::||||@LB@ CGCCAGU GGGUGACG@LB@3'-UUU...CUUAA A UAGUC...UAG-5'@LB@ | |@LB@ 139 122@LB@@LB@@LB@Energy -13.11 kcal/mol@LB@Hybridization Energy -26.7154 kcal/mol@LB@Unfolding Energy - mRNA 6.55898 kcal/mol@LB@Unfolding Energy - sRNA 13.7588 kcal/mol@LB@@LB@Position - mRNA 241 -- 255@LB@Position - sRNA 123 -- 138@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 23 |
0.00185 |
0.2633 |
b3492 |
yhiN |
-11.85 |
0.119629 |
108 -- 154 |
124 -- 161 |
putative oxidoreductase |
|
_____________107_______________________________________155\n_____________|_________________________________________|\n5'-CGG...GGAAA_____G______U____AUAG____________________AUGUU...AUA-3'\n______________GGUUU_AUGCCA_UAUU_____GCGC_UGGUGC_GGCGGGU\n______________|:|||_|::|||_||:|_____:|:|_||:|||_|||::||\n______________CUAAA_UGUGGU_AUGA_____UGUG_ACUACG_CCGUUCA\n3'-UUU...GCCCA_____A______U____GUCAG____U______U_______GUUGA...UAG-5'\n_____________|_________________________________________|\n_____________162_______________________________________123\n |
239 -- 245 |
153 -- 159 |
-35.0652 kcal/mol |
11.4478 kcal/mol |
11.9045 kcal/mol |
107 155@LB@ | |@LB@5'-CGG...GGAAA G U AUAG AUGUU...AUA-3'@LB@ GGUUU AUGCCA UAUU GCGC UGGUGC GGCGGGU@LB@ |:||| |::||| ||:| :|:| ||:||| |||::||@LB@ CUAAA UGUGGU AUGA UGUG ACUACG CCGUUCA@LB@3'-UUU...GCCCA A U GUCAG U U GUUGA...UAG-5'@LB@ | |@LB@ 162 123@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -35.0652 kcal/mol@LB@Unfolding Energy - mRNA 11.4478 kcal/mol@LB@Unfolding Energy - sRNA 11.9045 kcal/mol@LB@@LB@Position - mRNA 108 -- 154@LB@Position - sRNA 124 -- 161@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 115 |
0.01273 |
0.3575 |
b3440 |
yhhX |
-9.67 |
0.316530 |
203 -- 215 |
123 -- 136 |
putative oxidoreductase |
|
_____________202______________________________216\n_____________|________________________________|\n5'-GAC...CGUAU_______AC____AG____A__U____U____CGCAUA-3'\n______________GUACUUA__CGCA___GAU_GC_GGCA_GUCG\n______________:||||:|__|:||___|||_||_||||_|||:\n______________UAUGAGU__GUGU___CUA_CG_CCGU_CAGU\n3'-UUU...GUGGU_______CA____GUA______U____U____UGAAA...UAG-5'\n_____________|________________________________|\n_____________137______________________________122\n |
264 -- 270 |
175 -- 181 |
-25.3028 kcal/mol |
7.53441 kcal/mol |
8.15082 kcal/mol |
202 216@LB@ | |@LB@5'-GAC...CGUAU AC AG A U U CGCAUA-3'@LB@ GUACUUA CGCA GAU GC GGCA GUCG@LB@ :||||:| |:|| ||| || |||| |||:@LB@ UAUGAGU GUGU CUA CG CCGU CAGU@LB@3'-UUU...GUGGU CA GUA U U UGAAA...UAG-5'@LB@ | |@LB@ 137 122@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -25.3028 kcal/mol@LB@Unfolding Energy - mRNA 7.53441 kcal/mol@LB@Unfolding Energy - sRNA 8.15082 kcal/mol@LB@@LB@Position - mRNA 203 -- 215@LB@Position - sRNA 123 -- 136@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 175 -- 181@LB@ |
