169 |
0.02775 |
0.531 |
b2110 |
yehC |
-5.87 |
0.481945 |
191 -- 199 |
20 -- 28 |
putative periplasmic pilin chaperone |
|
_____________190_______200\n_____________|_________|\n5'-CAG...CUCCA_________CAUGG...CCG-3'\n______________GGUAAUAAA\n______________|||||||||\n______________CCAUUAUUU\n3'-UUU...UACUG_________AUUUC...UCG-5'\n_____________|_________|\n_____________29________19\n |
193 -- 199 |
20 -- 26 |
-7.96952 kcal/mol |
1.36589 kcal/mol |
0.737257 kcal/mol |
190 200@LB@ | |@LB@5'-CAG...CUCCA CAUGG...CCG-3'@LB@ GGUAAUAAA@LB@ |||||||||@LB@ CCAUUAUUU@LB@3'-UUU...UACUG AUUUC...UCG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -5.87 kcal/mol@LB@Hybridization Energy -7.96952 kcal/mol@LB@Unfolding Energy - mRNA 1.36589 kcal/mol@LB@Unfolding Energy - sRNA 0.737257 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 20 -- 26@LB@ |
170 |
0.02787 |
0.531 |
b3184 |
yhbE |
-10.77 |
0.067448 |
1 -- 31 |
11 -- 53 |
EamA family inner membrane putative transporter |
|
______________1__________________________________________32\n______________|__________________________________________|\n___________5'-_________GUA_________AUU___________________AGGCC...UGG-3'\n______________AAGCAGACG_____AAGUGAA___CG__________AAGUUAA\n______________||:|||||:_____||:||||___||__________|||||||\n______________UUUGUCUGU_____UUUACUU___GC__________UUCAAUU\n3'-UUU...CCCCA_________AAGUC_______ACU__CAUUAUUUAU_______ACUAC...UCG-5'\n_____________|___________________________________________|\n_____________54__________________________________________10\n |
25 -- 31 |
11 -- 17 |
-18.1985 kcal/mol |
1.09209 kcal/mol |
6.3325 kcal/mol |
1 32@LB@ | |@LB@ 5'- GUA AUU AGGCC...UGG-3'@LB@ AAGCAGACG AAGUGAA CG AAGUUAA@LB@ ||:|||||: ||:|||| || |||||||@LB@ UUUGUCUGU UUUACUU GC UUCAAUU@LB@3'-UUU...CCCCA AAGUC ACU CAUUAUUUAU ACUAC...UCG-5'@LB@ | |@LB@ 54 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -18.1985 kcal/mol@LB@Unfolding Energy - mRNA 1.09209 kcal/mol@LB@Unfolding Energy - sRNA 6.3325 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 11 -- 53@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
171 |
0.02792 |
0.531 |
b2754 |
ygbF |
-9.28 |
0.134010 |
284 -- 290 |
53 -- 59 |
CRISPR adaptation ssRNA endonuclease |
|
_____________283_____291\n_____________|_______|\n5'-UGG...CGUGC_______UAUGU...GUG-3'\n______________AGGGGUA\n______________|||||||\n______________UCCCCAU\n3'-UUU...CUUUA_______UUGUC...UCG-5'\n_____________|_______|\n_____________60______52\n |
284 -- 290 |
53 -- 59 |
-11.8962 kcal/mol |
2.55869 kcal/mol |
0.0564539 kcal/mol |
283 291@LB@ | |@LB@5'-UGG...CGUGC UAUGU...GUG-3'@LB@ AGGGGUA@LB@ |||||||@LB@ UCCCCAU@LB@3'-UUU...CUUUA UUGUC...UCG-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -11.8962 kcal/mol@LB@Unfolding Energy - mRNA 2.55869 kcal/mol@LB@Unfolding Energy - sRNA 0.0564539 kcal/mol@LB@@LB@Position - mRNA 284 -- 290@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 53 -- 59@LB@ |
172 |
0.02805 |
0.531 |
b1912 |
pgsA |
-10.33 |
0.083391 |
160 -- 169 |
52 -- 61 |
phosphatidylglycerophosphate synthetase |
|
_____________159________170\n_____________|__________|\n5'-GUC...GCAAC__________UCUUA...UUG-3'\n______________AUAGGGGUAA\n______________||||||||||\n______________UAUCCCCAUU\n3'-UUU...AACUU__________UGUCU...UCG-5'\n_____________|__________|\n_____________62_________51\n |
163 -- 169 |
52 -- 58 |
-13.9577 kcal/mol |
3.55629 kcal/mol |
0.0747282 kcal/mol |
159 170@LB@ | |@LB@5'-GUC...GCAAC UCUUA...UUG-3'@LB@ AUAGGGGUAA@LB@ ||||||||||@LB@ UAUCCCCAUU@LB@3'-UUU...AACUU UGUCU...UCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -13.9577 kcal/mol@LB@Unfolding Energy - mRNA 3.55629 kcal/mol@LB@Unfolding Energy - sRNA 0.0747282 kcal/mol@LB@@LB@Position - mRNA 160 -- 169@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
173 |
0.02817 |
0.531 |
b0952 |
pqiC |
-7.60 |
0.267291 |
63 -- 71 |
1 -- 9 |
DUF330 family putative lipoprotein |
|
_____________62________72\n_____________|_________|\n5'-ACG...AACAA_________GGAUA...GCG-3'\n______________GAUGGUGGC\n______________||||:|:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
65 -- 71 |
1 -- 7 |
-13.4268 kcal/mol |
5.80912 kcal/mol |
0.0200155 kcal/mol |
62 72@LB@ | |@LB@5'-ACG...AACAA GGAUA...GCG-3'@LB@ GAUGGUGGC@LB@ ||||:|:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.60 kcal/mol@LB@Hybridization Energy -13.4268 kcal/mol@LB@Unfolding Energy - mRNA 5.80912 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 63 -- 71@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 1 -- 7@LB@ |
174 |
0.02825 |
0.531 |
b2154 |
yeiG |
-9.96 |
0.098977 |
140 -- 169 |
15 -- 51 |
S-formylglutathione hydrolase |
|
_____________139_____________________________________170\n_____________|_______________________________________|\n5'-GCU...UACUC____C________________AA______U_________AAAUU...UUC-3'\n______________ACAG_ACAU_______UGAAU__ACGGUA___GAUGAAG\n______________||||_||||_______|||||__||||||___:||:|||\n______________UGUC_UGUA_______ACUUA__UGCCAU___UUAUUUC\n3'-UUU...CCAUU_________AGUCUUU_____C_______UAU_______AAUUA...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
163 -- 169 |
15 -- 21 |
-20.0225 kcal/mol |
3.74261 kcal/mol |
6.32297 kcal/mol |
139 170@LB@ | |@LB@5'-GCU...UACUC C AA U AAAUU...UUC-3'@LB@ ACAG ACAU UGAAU ACGGUA GAUGAAG@LB@ |||| |||| ||||| |||||| :||:|||@LB@ UGUC UGUA ACUUA UGCCAU UUAUUUC@LB@3'-UUU...CCAUU AGUCUUU C UAU AAUUA...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -20.0225 kcal/mol@LB@Unfolding Energy - mRNA 3.74261 kcal/mol@LB@Unfolding Energy - sRNA 6.32297 kcal/mol@LB@@LB@Position - mRNA 140 -- 169@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
175 |
0.0283 |
0.531 |
b2048 |
cpsG |
-16.42 |
0.002969 |
89 -- 138 |
17 -- 58 |
phosphomannomutase |
|
_____________88___________________________________________________139\n_____________|____________________________________________________|\n5'-GGG...CGGAC___U_______UC_________C________CGAAACC______________CGACA...GCG-3'\n______________GGG_GUAAACG__GCA_UCAGG_AAUGAAUG_______GCGGU_GUAAAUAA\n______________|||_||||||:__:||_||||:_||||||||_______:||||_:|||||||\n______________CCC_CAUUUGU__UGU_AGUCU_UUACUUAC_______UGCCA_UAUUUAUU\n3'-UUU...UUUAU___________C____A__________________________U________UCAAU...UCG-5'\n_____________|____________________________________________________|\n_____________59___________________________________________________16\n |
132 -- 138 |
17 -- 23 |
-37.1596 kcal/mol |
14.4139 kcal/mol |
6.32276 kcal/mol |
88 139@LB@ | |@LB@5'-GGG...CGGAC U UC C CGAAACC CGACA...GCG-3'@LB@ GGG GUAAACG GCA UCAGG AAUGAAUG GCGGU GUAAAUAA@LB@ ||| ||||||: :|| ||||: |||||||| :|||| :|||||||@LB@ CCC CAUUUGU UGU AGUCU UUACUUAC UGCCA UAUUUAUU@LB@3'-UUU...UUUAU C A U UCAAU...UCG-5'@LB@ | |@LB@ 59 16@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.1596 kcal/mol@LB@Unfolding Energy - mRNA 14.4139 kcal/mol@LB@Unfolding Energy - sRNA 6.32276 kcal/mol@LB@@LB@Position - mRNA 89 -- 138@LB@Position - sRNA 17 -- 58@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 17 -- 23@LB@ |
177 |
0.02886 |
0.5353 |
b2206 |
napA |
-7.95 |
0.233634 |
77 -- 89 |
1 -- 13 |
nitrate reductase periplasmic large subunit |
|
_____________76____________90\n_____________|_____________|\n5'-GAC...GAUUG_________A___AGAAG...UUG-3'\n______________UGGUGGUGG_AGC\n______________|::||:||:_|||\n______________AUUACUACU_UCG\n3'-UUU...UUUCA_________A___-5'\n_____________|____________|\n_____________14___________1\n |
79 -- 85 |
5 -- 11 |
-12.9311 kcal/mol |
4.9403 kcal/mol |
0.0446954 kcal/mol |
76 90@LB@ | |@LB@5'-GAC...GAUUG A AGAAG...UUG-3'@LB@ UGGUGGUGG AGC@LB@ |::||:||: |||@LB@ AUUACUACU UCG@LB@3'-UUU...UUUCA A -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -12.9311 kcal/mol@LB@Unfolding Energy - mRNA 4.9403 kcal/mol@LB@Unfolding Energy - sRNA 0.0446954 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 5 -- 11@LB@ |
178 |
0.02931 |
0.5406 |
b3858 |
yihD |
-11.25 |
0.053413 |
186 -- 232 |
8 -- 55 |
DUF1040 protein YihD |
|
_____________185__________________________________________________233\n_____________|____________________________________________________|\n5'-AUA...CAAGA_____G_________CUAU______UAA____UC______________U___ACUCC...CGA-3'\n______________GUAAG_AG_CA_UCA____GAAAUG____ACG____UGAAUGAAGUUA_UGA\n______________||||:_||_||_|||____||||||____|||____|:|||:||||||_|||\n______________CAUUU_UC_GU_AGU____CUUUAC____UGC____AUUUAUUUCAAU_ACU\n3'-UUU...AUCCC_____G__U__A_____________UUAC___CAUU____________U___ACUAUCG-5'\n_____________|____________________________________________________|\n_____________56___________________________________________________7\n |
222 -- 228 |
12 -- 18 |
-26.8405 kcal/mol |
9.25239 kcal/mol |
6.33488 kcal/mol |
185 233@LB@ | |@LB@5'-AUA...CAAGA G CUAU UAA UC U ACUCC...CGA-3'@LB@ GUAAG AG CA UCA GAAAUG ACG UGAAUGAAGUUA UGA@LB@ ||||: || || ||| |||||| ||| |:|||:|||||| |||@LB@ CAUUU UC GU AGU CUUUAC UGC AUUUAUUUCAAU ACU@LB@3'-UUU...AUCCC G U A UUAC CAUU U ACUAUCG-5'@LB@ | |@LB@ 56 7@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -26.8405 kcal/mol@LB@Unfolding Energy - mRNA 9.25239 kcal/mol@LB@Unfolding Energy - sRNA 6.33488 kcal/mol@LB@@LB@Position - mRNA 186 -- 232@LB@Position - sRNA 8 -- 55@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 12 -- 18@LB@ |
179 |
0.02973 |
0.5424 |
b2812 |
tcdA |
-11.60 |
0.044907 |
209 -- 228 |
1 -- 28 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________208___________________________229\n_____________|_____________________________|\n5'-GUG...UCUGU_______________________C_____GUCAG...UUU-3'\n______________GGUAAU_________UAGUGAUG_AUGGC\n______________||||||_________||:|||||_||:||\n______________CCAUUA_________AUUACUAC_UAUCG\n3'-UUU...UACUG______UUUAUUUCA______________-5'\n_____________|____________________________|\n_____________29___________________________1\n |
216 -- 222 |
6 -- 12 |
-16.3639 kcal/mol |
3.995 kcal/mol |
0.766821 kcal/mol |
208 229@LB@ | |@LB@5'-GUG...UCUGU C GUCAG...UUU-3'@LB@ GGUAAU UAGUGAUG AUGGC@LB@ |||||| ||:||||| ||:||@LB@ CCAUUA AUUACUAC UAUCG@LB@3'-UUU...UACUG UUUAUUUCA -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.3639 kcal/mol@LB@Unfolding Energy - mRNA 3.995 kcal/mol@LB@Unfolding Energy - sRNA 0.766821 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |