147 |
0.02463 |
0.526 |
b2830 |
rppH |
-8.72 |
0.170707 |
205 -- 218 |
1 -- 14 |
RNA pyrophosphohydrolase |
|
_____________204____________219\n_____________|______________|\n5'-UUC...GGUGA_______C______UACCG...GGC-3'\n______________UUGAUGA_GAUGGC\n______________||:||||_|||:||\n______________AAUUACU_CUAUCG\n3'-UUU...AUUUC_______A______-5'\n_____________|_____________|\n_____________15____________1\n |
205 -- 211 |
8 -- 14 |
-13.7427 kcal/mol |
4.97796 kcal/mol |
0.0473494 kcal/mol |
204 219@LB@ | |@LB@5'-UUC...GGUGA C UACCG...GGC-3'@LB@ UUGAUGA GAUGGC@LB@ ||:|||| |||:||@LB@ AAUUACU CUAUCG@LB@3'-UUU...AUUUC A -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -13.7427 kcal/mol@LB@Unfolding Energy - mRNA 4.97796 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 205 -- 218@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 8 -- 14@LB@ |
148 |
0.02477 |
0.526 |
b2262 |
menB |
-9.56 |
0.118602 |
261 -- 300 |
25 -- 56 |
dihydroxynaphthoic acid synthetase |
|
_____________260______________________________________300\n_____________|________________________________________|\n5'-CGU...CCGAA___UUCGA__________UU_____AAAUCCACC_______-3'\n______________GGU_____GGACAUUC_G__AUGAA_________GACGGUA\n______________|||_____:|||||||_|__|||||_________|||||||\n______________CCA_____UCUGUAAG_C__UACUU_________CUGCCAU\n3'-UUU...UAUCC___UUUG_________U_UU_____A_______________UAUUU...UCG-5'\n_____________|_________________________________________|\n_____________57________________________________________24\n |
294 -- 300 |
25 -- 31 |
-24.8577 kcal/mol |
9.0019 kcal/mol |
6.29869 kcal/mol |
260 300@LB@ | |@LB@5'-CGU...CCGAA UUCGA UU AAAUCCACC -3'@LB@ GGU GGACAUUC G AUGAA GACGGUA@LB@ ||| :||||||| | ||||| |||||||@LB@ CCA UCUGUAAG C UACUU CUGCCAU@LB@3'-UUU...UAUCC UUUG U UU A UAUUU...UCG-5'@LB@ | |@LB@ 57 24@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -24.8577 kcal/mol@LB@Unfolding Energy - mRNA 9.0019 kcal/mol@LB@Unfolding Energy - sRNA 6.29869 kcal/mol@LB@@LB@Position - mRNA 261 -- 300@LB@Position - sRNA 25 -- 56@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 25 -- 31@LB@ |
149 |
0.02481 |
0.526 |
b2108 |
yehA |
-13.80 |
0.014025 |
228 -- 241 |
1 -- 14 |
putative fimbrial-like adhesin protein |
|
_____________227____________242\n_____________|______________|\n5'-GUU...UUAUA______________UAUGC...UUG-3'\n______________UUAAUGAUGAUGGU\n______________|||||||||||:|:\n______________AAUUACUACUAUCG\n3'-UUU...AUUUC______________-5'\n_____________|_____________|\n_____________15____________1\n |
235 -- 241 |
1 -- 7 |
-16.5389 kcal/mol |
2.69058 kcal/mol |
0.0473494 kcal/mol |
227 242@LB@ | |@LB@5'-GUU...UUAUA UAUGC...UUG-3'@LB@ UUAAUGAUGAUGGU@LB@ |||||||||||:|:@LB@ AAUUACUACUAUCG@LB@3'-UUU...AUUUC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -16.5389 kcal/mol@LB@Unfolding Energy - mRNA 2.69058 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 228 -- 241@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
151 |
0.02491 |
0.526 |
b3575 |
yiaK |
-7.81 |
0.245984 |
13 -- 22 |
1 -- 10 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________12_________23\n_____________|__________|\n5'-UUU...CGUCC__________GCAAA...UCG-3'\n______________UGAUGGUAGC\n______________|||||:||||\n______________ACUACUAUCG\n3'-UUU...CAAUU__________-5'\n_____________|_________|\n_____________11________1\n |
16 -- 22 |
1 -- 7 |
-14.2362 kcal/mol |
6.39652 kcal/mol |
0.0255427 kcal/mol |
12 23@LB@ | |@LB@5'-UUU...CGUCC GCAAA...UCG-3'@LB@ UGAUGGUAGC@LB@ |||||:||||@LB@ ACUACUAUCG@LB@3'-UUU...CAAUU -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -14.2362 kcal/mol@LB@Unfolding Energy - mRNA 6.39652 kcal/mol@LB@Unfolding Energy - sRNA 0.0255427 kcal/mol@LB@@LB@Position - mRNA 13 -- 22@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 1 -- 7@LB@ |
153 |
0.02513 |
0.526 |
b2745 |
truD |
-9.91 |
0.100940 |
94 -- 116 |
1 -- 24 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________93_______________________117\n_____________|________________________|\n5'-AAC...GCCAU________U_____C_____A___CACUA...UGG-3'\n______________AUGGAUGA_GUUAA__GUGA_AGC\n______________||::||:|_|||||__:|||_|||\n______________UAUUUAUU_CAAUU__UACU_UCG\n3'-UUU...GCCAU________U_____AC____A___-5'\n_____________|_______________________|\n_____________25______________________1\n |
95 -- 101 |
17 -- 23 |
-14.0384 kcal/mol |
4.01581 kcal/mol |
0.108605 kcal/mol |
93 117@LB@ | |@LB@5'-AAC...GCCAU U C A CACUA...UGG-3'@LB@ AUGGAUGA GUUAA GUGA AGC@LB@ ||::||:| ||||| :||| |||@LB@ UAUUUAUU CAAUU UACU UCG@LB@3'-UUU...GCCAU U AC A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -14.0384 kcal/mol@LB@Unfolding Energy - mRNA 4.01581 kcal/mol@LB@Unfolding Energy - sRNA 0.108605 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 17 -- 23@LB@ |
154 |
0.02518 |
0.526 |
b1602 |
pntB |
-9.01 |
0.150855 |
190 -- 197 |
52 -- 59 |
pyridine nucleotide transhydrogenase beta subunit |
|
_____________189______198\n_____________|________|\n5'-GCU...AAUUA________CAUAU...GUA-3'\n______________AGGGGUAA\n______________||||||||\n______________UCCCCAUU\n3'-UUU...CUUUA________UGUCU...UCG-5'\n_____________|________|\n_____________60_______51\n |
191 -- 197 |
52 -- 58 |
-12.5664 kcal/mol |
3.49825 kcal/mol |
0.0599826 kcal/mol |
189 198@LB@ | |@LB@5'-GCU...AAUUA CAUAU...GUA-3'@LB@ AGGGGUAA@LB@ ||||||||@LB@ UCCCCAUU@LB@3'-UUU...CUUUA UGUCU...UCG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -12.5664 kcal/mol@LB@Unfolding Energy - mRNA 3.49825 kcal/mol@LB@Unfolding Energy - sRNA 0.0599826 kcal/mol@LB@@LB@Position - mRNA 190 -- 197@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 52 -- 58@LB@ |
155 |
0.02521 |
0.526 |
b4208 |
cycA |
-8.71 |
0.171102 |
175 -- 207 |
24 -- 51 |
D-alanine/D-serine/glycine transporter |
|
_____________174________________________________208\n_____________|__________________________________|\n5'-AUU...ACAAC_______GGUA__________AAAAAC_______AUCAG...UUG-3'\n______________ACAGACA____CAGGAA_GAA______AUGGUAG\n______________|||||||____|||:||_|||______|:||||:\n______________UGUCUGU____GUCUUU_CUU______UGCCAUU\n3'-UUU...CCAUU_______AA________A___AC___________AUUUA...UCG-5'\n_____________|__________________________________|\n_____________52_________________________________23\n |
201 -- 207 |
24 -- 30 |
-19.5671 kcal/mol |
4.55835 kcal/mol |
6.29692 kcal/mol |
174 208@LB@ | |@LB@5'-AUU...ACAAC GGUA AAAAAC AUCAG...UUG-3'@LB@ ACAGACA CAGGAA GAA AUGGUAG@LB@ ||||||| |||:|| ||| |:||||:@LB@ UGUCUGU GUCUUU CUU UGCCAUU@LB@3'-UUU...CCAUU AA A AC AUUUA...UCG-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -19.5671 kcal/mol@LB@Unfolding Energy - mRNA 4.55835 kcal/mol@LB@Unfolding Energy - sRNA 6.29692 kcal/mol@LB@@LB@Position - mRNA 175 -- 207@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
156 |
0.02543 |
0.526 |
b2805 |
fucR |
-9.08 |
0.146396 |
128 -- 135 |
52 -- 59 |
l-fucose operon activator |
|
_____________127______136\n_____________|________|\n5'-CAC...AAAAA________CACCG...AAA-3'\n______________AGGGGUAA\n______________||||||||\n______________UCCCCAUU\n3'-UUU...CUUUA________UGUCU...UCG-5'\n_____________|________|\n_____________60_______51\n |
129 -- 135 |
52 -- 58 |
-12.2757 kcal/mol |
3.13783 kcal/mol |
0.0599826 kcal/mol |
127 136@LB@ | |@LB@5'-CAC...AAAAA CACCG...AAA-3'@LB@ AGGGGUAA@LB@ ||||||||@LB@ UCCCCAUU@LB@3'-UUU...CUUUA UGUCU...UCG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -12.2757 kcal/mol@LB@Unfolding Energy - mRNA 3.13783 kcal/mol@LB@Unfolding Energy - sRNA 0.0599826 kcal/mol@LB@@LB@Position - mRNA 128 -- 135@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 52 -- 58@LB@ |
157 |
0.02559 |
0.526 |
b2057 |
wcaC |
-8.75 |
0.168472 |
165 -- 205 |
16 -- 58 |
putative glycosyl transferase |
|
_____________164___________________________________________206\n_____________|_____________________________________________|\n5'-GUC...GCGCU__U__________AAA____CGC_______A_____U________UAUUU...CAC-3'\n______________GG_GGUGGG_AGA_____AG____GAGUGA_GGUAA_UAAAUGAA\n______________||_|||:::_|||_____||____||:|||_|||||_|||||:||\n______________CC_CCAUUU_UCU_____UC____CUUACU_CCAUU_AUUUAUUU\n3'-UUU...UUUAU_________G___GUAAG__UUUA______G______________CAAUU...UCG-5'\n_____________|_____________________________________________|\n_____________59____________________________________________15\n |
199 -- 205 |
16 -- 22 |
-25.2337 kcal/mol |
10.162 kcal/mol |
6.32308 kcal/mol |
164 206@LB@ | |@LB@5'-GUC...GCGCU U AAA CGC A U UAUUU...CAC-3'@LB@ GG GGUGGG AGA AG GAGUGA GGUAA UAAAUGAA@LB@ || |||::: ||| || ||:||| ||||| |||||:||@LB@ CC CCAUUU UCU UC CUUACU CCAUU AUUUAUUU@LB@3'-UUU...UUUAU G GUAAG UUUA G CAAUU...UCG-5'@LB@ | |@LB@ 59 15@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -25.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.162 kcal/mol@LB@Unfolding Energy - sRNA 6.32308 kcal/mol@LB@@LB@Position - mRNA 165 -- 205@LB@Position - sRNA 16 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |
158 |
0.0258 |
0.526 |
b3738 |
atpB |
-11.34 |
0.051140 |
75 -- 89 |
1 -- 15 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________74______________90\n_____________|_______________|\n5'-CAU...UUGGU____C__________GUUGG...ACC-3'\n______________GUUA_UGGUGGUGGC\n______________||||_||:||:|:||\n______________CAAU_ACUACUAUCG\n3'-UUU...UAUUU____U__________-5'\n_____________|______________|\n_____________16_____________1\n |
83 -- 89 |
1 -- 7 |
-16.9836 kcal/mol |
5.59496 kcal/mol |
0.0474282 kcal/mol |
74 90@LB@ | |@LB@5'-CAU...UUGGU C GUUGG...ACC-3'@LB@ GUUA UGGUGGUGGC@LB@ |||| ||:||:|:||@LB@ CAAU ACUACUAUCG@LB@3'-UUU...UAUUU U -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -16.9836 kcal/mol@LB@Unfolding Energy - mRNA 5.59496 kcal/mol@LB@Unfolding Energy - sRNA 0.0474282 kcal/mol@LB@@LB@Position - mRNA 75 -- 89@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 1 -- 7@LB@ |