| 150 |
0.008837 |
0.2059 |
b0453 |
ybaY |
-11.57 |
0.069675 |
268 -- 294 |
71 -- 94 |
outer membrane lipoprotein |
|
_____________267_________________________295\n_____________|___________________________|\n5'-AAG...UAAAA___________CA_A____________CUGCAA-3'\n______________GCGCGGAUAUU__G_CGCCAGCACCGG\n______________|||||:|||:|__|_|||||:||||:|\n______________CGCGCUUAUGA__C_GCGGUUGUGGUC\n3'-UUU...CCCCA___________________________CCUUU...GUG-5'\n_____________|___________________________|\n_____________95__________________________70\n |
283 -- 289 |
76 -- 82 |
-36.9875 kcal/mol |
12.3701 kcal/mol |
13.0144 kcal/mol |
267 295@LB@ | |@LB@5'-AAG...UAAAA CA A CUGCAA-3'@LB@ GCGCGGAUAUU G CGCCAGCACCGG@LB@ |||||:|||:| | |||||:||||:|@LB@ CGCGCUUAUGA C GCGGUUGUGGUC@LB@3'-UUU...CCCCA CCUUU...GUG-5'@LB@ | |@LB@ 95 70@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -36.9875 kcal/mol@LB@Unfolding Energy - mRNA 12.3701 kcal/mol@LB@Unfolding Energy - sRNA 13.0144 kcal/mol@LB@@LB@Position - mRNA 268 -- 294@LB@Position - sRNA 71 -- 94@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 24 |
0.001457 |
0.1727 |
b0424 |
yajL |
-16.26 |
0.008266 |
79 -- 97 |
64 -- 86 |
oxidative-stress-resistance chaperone |
|
_____________78______________________98\n_____________|_______________________|\n5'-AGA...CGCGC_______________________GACUA...CCA-3'\n______________GCUGCGCCA_CACU___GAAAUC\n______________:||||||||_|||:___||||||\n______________UGACGCGGU_GUGG___CUUUAG\n3'-UUU...GCUUA_________U____UCC______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
81 -- 87 |
78 -- 84 |
-26.9283 kcal/mol |
3.28429 kcal/mol |
7.38435 kcal/mol |
78 98@LB@ | |@LB@5'-AGA...CGCGC GACUA...CCA-3'@LB@ GCUGCGCCA CACU GAAAUC@LB@ :|||||||| |||: ||||||@LB@ UGACGCGGU GUGG CUUUAG@LB@3'-UUU...GCUUA U UCC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -26.9283 kcal/mol@LB@Unfolding Energy - mRNA 3.28429 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 79 -- 97@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 78 |
0.004296 |
0.1855 |
b3258 |
panF |
-10.37 |
0.118507 |
142 -- 153 |
52 -- 62 |
pantothenate:sodium symporter |
|
_____________141__________154\n_____________|____________|\n5'-GGC...UUUAU___A________GGCGA...UUA-3'\n______________UGG_CUGUGCUG\n______________|||_|||:||:|\n______________ACC_GACGCGGC\n3'-UUU...UUAGA____________AUUUA...GUG-5'\n_____________|____________|\n_____________63___________51\n |
147 -- 153 |
52 -- 58 |
-17.1407 kcal/mol |
1.89201 kcal/mol |
4.8804 kcal/mol |
141 154@LB@ | |@LB@5'-GGC...UUUAU A GGCGA...UUA-3'@LB@ UGG CUGUGCUG@LB@ ||| |||:||:|@LB@ ACC GACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -17.1407 kcal/mol@LB@Unfolding Energy - mRNA 1.89201 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 177 |
0.01048 |
0.208 |
b2416 |
ptsI |
-10.21 |
0.127224 |
180 -- 212 |
6 -- 36 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________179________________________________213\n_____________|__________________________________|\n5'-GUG...AAAUC___C_____UAA____G___UA__A_________AUUUU...CCG-3'\n______________AGU_ACAAG___GGUA_GGU__UG__UUUCAGGC\n______________|||_|||||___||:|_:|:__||__||||||||\n______________UCA_UGUUC___CCGU_UCG__AC__AAAGUCCG\n3'-UUU...ACUAC___A____________G___UG__AA________GCGUG-5'\n_____________|__________________________________|\n_____________37_________________________________5\n |
206 -- 212 |
6 -- 12 |
-27.3223 kcal/mol |
5.11839 kcal/mol |
11.9979 kcal/mol |
179 213@LB@ | |@LB@5'-GUG...AAAUC C UAA G UA A AUUUU...CCG-3'@LB@ AGU ACAAG GGUA GGU UG UUUCAGGC@LB@ ||| ||||| ||:| :|: || ||||||||@LB@ UCA UGUUC CCGU UCG AC AAAGUCCG@LB@3'-UUU...ACUAC A G UG AA GCGUG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -10.21 kcal/mol@LB@Hybridization Energy -27.3223 kcal/mol@LB@Unfolding Energy - mRNA 5.11839 kcal/mol@LB@Unfolding Energy - sRNA 11.9979 kcal/mol@LB@@LB@Position - mRNA 180 -- 212@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 37 |
0.002023 |
0.1727 |
b2197 |
ccmE |
-14.61 |
0.017549 |
166 -- 218 |
48 -- 94 |
periplasmic heme chaperone |
|
_____________165___________________________________________________________219\n_____________|_____________________________________________________________|\n5'-CCU...GUGAG_____UUUAC______________G____A_____________AUGAAUAUUC________AACCG...AUA-3'\n______________GCGCG_____GUGCUGCG_CAACA_CAGG________GGCUGC__________GCCGUAAA\n______________|||||_____:|:|||||_|||||_||||________||||||__________||||||||\n______________CGCGC_____UAUGACGC_GUUGU_GUCC________CCGACG__________CGGCAUUU\n3'-UUU...CCCCA_____U____________G_____G____CUUUAGAA________________________AAUAA...GUG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________47\n |
212 -- 218 |
48 -- 54 |
-51.9512 kcal/mol |
20.0441 kcal/mol |
17.2978 kcal/mol |
165 219@LB@ | |@LB@5'-CCU...GUGAG UUUAC G A AUGAAUAUUC AACCG...AUA-3'@LB@ GCGCG GUGCUGCG CAACA CAGG GGCUGC GCCGUAAA@LB@ ||||| :|:||||| ||||| |||| |||||| ||||||||@LB@ CGCGC UAUGACGC GUUGU GUCC CCGACG CGGCAUUU@LB@3'-UUU...CCCCA U G G CUUUAGAA AAUAA...GUG-5'@LB@ | |@LB@ 95 47@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -51.9512 kcal/mol@LB@Unfolding Energy - mRNA 20.0441 kcal/mol@LB@Unfolding Energy - sRNA 17.2978 kcal/mol@LB@@LB@Position - mRNA 166 -- 218@LB@Position - sRNA 48 -- 94@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 6 |
0.0001378 |
0.08054 |
b3860 |
dsbA |
-12.69 |
0.042007 |
89 -- 111 |
55 -- 75 |
periplasmic protein disulfide isomerase I |
|
_____________88______________________112\n_____________|_______________________|\n5'-UUU...GGUUA_______A_____AC________ACAGA...AAC-3'\n______________ACCGGGG_AGAUU__UGGCUGCG\n______________|||:|||_|:||:__||||||||\n______________UGGUCCC_UUUAG__ACCGACGC\n3'-UUU...GGUUG_____________A_________GGCAU...GUG-5'\n_____________|_______________________|\n_____________76______________________54\n |
105 -- 111 |
55 -- 61 |
-30.5184 kcal/mol |
9.58616 kcal/mol |
8.24199 kcal/mol |
88 112@LB@ | |@LB@5'-UUU...GGUUA A AC ACAGA...AAC-3'@LB@ ACCGGGG AGAUU UGGCUGCG@LB@ |||:||| |:||: ||||||||@LB@ UGGUCCC UUUAG ACCGACGC@LB@3'-UUU...GGUUG A GGCAU...GUG-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -30.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.58616 kcal/mol@LB@Unfolding Energy - sRNA 8.24199 kcal/mol@LB@@LB@Position - mRNA 89 -- 111@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 55 |
0.002731 |
0.1727 |
b2480 |
bcp |
-8.89 |
0.222722 |
156 -- 187 |
28 -- 56 |
peroxiredoxin; thiol peroxidase thioredoxin-dependent |
|
_____________155_________________________________188\n_____________|___________________________________|\n5'-GAG...AUUAA______C_______CCCAAC_______________AUGGA...UUC-3'\n______________CGUCGU_AAUUAUU______AUGAUGA___ACAGG\n______________||:|||_|||||||______|||||||___|||:|\n______________GCGGCA_UUAAUAA______UACUACU___UGUUC\n3'-UUU...CCGAC______U____________________CAA_____CCGUG...GUG-5'\n_____________|___________________________________|\n_____________57__________________________________27\n |
176 -- 182 |
36 -- 42 |
-21.7802 kcal/mol |
6.3273 kcal/mol |
6.56571 kcal/mol |
155 188@LB@ | |@LB@5'-GAG...AUUAA C CCCAAC AUGGA...UUC-3'@LB@ CGUCGU AAUUAUU AUGAUGA ACAGG@LB@ ||:||| ||||||| ||||||| |||:|@LB@ GCGGCA UUAAUAA UACUACU UGUUC@LB@3'-UUU...CCGAC U CAA CCGUG...GUG-5'@LB@ | |@LB@ 57 27@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -21.7802 kcal/mol@LB@Unfolding Energy - mRNA 6.3273 kcal/mol@LB@Unfolding Energy - sRNA 6.56571 kcal/mol@LB@@LB@Position - mRNA 156 -- 187@LB@Position - sRNA 28 -- 56@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 35 |
0.001921 |
0.1727 |
b1849 |
purT |
-12.35 |
0.048961 |
166 -- 192 |
67 -- 88 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________165_________________________193\n_____________|___________________________|\n5'-UUU...CGUUU_________G__GAAUUA_________UAUUC...GUC-3'\n______________AUACUGCGC_CG______AUCAGGGGA\n______________|||||||||_|:______|:|||||:|\n______________UAUGACGCG_GU______UGGUCCCUU\n3'-UUU...GCGCU____________UG_____________UAGAA...GUG-5'\n_____________|___________________________|\n_____________89__________________________66\n |
186 -- 192 |
67 -- 73 |
-25.9621 kcal/mol |
6.22738 kcal/mol |
7.38319 kcal/mol |
165 193@LB@ | |@LB@5'-UUU...CGUUU G GAAUUA UAUUC...GUC-3'@LB@ AUACUGCGC CG AUCAGGGGA@LB@ ||||||||| |: |:|||||:|@LB@ UAUGACGCG GU UGGUCCCUU@LB@3'-UUU...GCGCU UG UAGAA...GUG-5'@LB@ | |@LB@ 89 66@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -25.9621 kcal/mol@LB@Unfolding Energy - mRNA 6.22738 kcal/mol@LB@Unfolding Energy - sRNA 7.38319 kcal/mol@LB@@LB@Position - mRNA 166 -- 192@LB@Position - sRNA 67 -- 88@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 141 |
0.008132 |
0.2031 |
b3412 |
bioH |
-10.51 |
0.111302 |
230 -- 255 |
56 -- 74 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________229________________________256\n_____________|__________________________|\n5'-GGC...AAAGG________AUGUUC______U_____UGCAC...ACG-3'\n______________UCAGGGGA______AUCUUG_GCUGC\n______________:|||||:|______||||||_|||||\n______________GGUCCCUU______UAGAAC_CGACG\n3'-UUU...GUUGU__________________________CGGCA...GUG-5'\n_____________|__________________________|\n_____________75_________________________55\n |
231 -- 237 |
67 -- 73 |
-25.2186 kcal/mol |
6.56983 kcal/mol |
8.13729 kcal/mol |
229 256@LB@ | |@LB@5'-GGC...AAAGG AUGUUC U UGCAC...ACG-3'@LB@ UCAGGGGA AUCUUG GCUGC@LB@ :|||||:| |||||| |||||@LB@ GGUCCCUU UAGAAC CGACG@LB@3'-UUU...GUUGU CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -25.2186 kcal/mol@LB@Unfolding Energy - mRNA 6.56983 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 128 |
0.007127 |
0.1961 |
b0696 |
kdpC |
-9.30 |
0.187437 |
90 -- 106 |
44 -- 60 |
potassium translocating ATPase subunit C |
|
_____________89________________107\n_____________|_________________|\n5'-GCG...GCCAU____________C____GGAUU...GGU-3'\n______________GUUGCGCCGUAA_UUAU\n______________|:||||||||||_||||\n______________CGACGCGGCAUU_AAUA\n3'-UUU...AGAAC____________U____AUACU...GUG-5'\n_____________|_________________|\n_____________61________________43\n |
95 -- 101 |
49 -- 55 |
-22.6138 kcal/mol |
6.57247 kcal/mol |
6.74006 kcal/mol |
89 107@LB@ | |@LB@5'-GCG...GCCAU C GGAUU...GGU-3'@LB@ GUUGCGCCGUAA UUAU@LB@ |:|||||||||| ||||@LB@ CGACGCGGCAUU AAUA@LB@3'-UUU...AGAAC U AUACU...GUG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -22.6138 kcal/mol@LB@Unfolding Energy - mRNA 6.57247 kcal/mol@LB@Unfolding Energy - sRNA 6.74006 kcal/mol@LB@@LB@Position - mRNA 90 -- 106@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 49 -- 55@LB@ |
