| 180 |
0.01069 |
0.2089 |
b4529 |
ydbJ |
-7.20 |
0.426635 |
222 -- 243 |
41 -- 61 |
DUF333 family putative lipoprotein |
|
_____________221____________________244\n_____________|______________________|\n5'-GCA...GGGUA__G_______C_UU________CGGCG...GUU-3'\n______________GG_UGUGCCG_U__AUUGUUGU\n______________||_||:||||_|__|||:||:|\n______________CC_ACGCGGC_A__UAAUAAUA\n3'-UUU...UAGAA__G_________UU________CUACU...GUG-5'\n_____________|______________________|\n_____________62_____________________40\n |
225 -- 231 |
52 -- 58 |
-21.8046 kcal/mol |
7.13894 kcal/mol |
7.46625 kcal/mol |
221 244@LB@ | |@LB@5'-GCA...GGGUA G C UU CGGCG...GUU-3'@LB@ GG UGUGCCG U AUUGUUGU@LB@ || ||:|||| | |||:||:|@LB@ CC ACGCGGC A UAAUAAUA@LB@3'-UUU...UAGAA G UU CUACU...GUG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -21.8046 kcal/mol@LB@Unfolding Energy - mRNA 7.13894 kcal/mol@LB@Unfolding Energy - sRNA 7.46625 kcal/mol@LB@@LB@Position - mRNA 222 -- 243@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 140 |
0.008117 |
0.2031 |
b3221 |
yhcH |
-13.19 |
0.033484 |
158 -- 212 |
34 -- 73 |
DUF386 family protein cupin superfamily |
|
_____________157_____________________________________________________213\n_____________|_______________________________________________________|\n5'-AUC...UGAUG____UUUAC__GG___________UGGCCCAGGGAGAA_______G_________GAAGU...AAG-3'\n______________CAGG_____UU__GGCUGCGCUGU______________AAAUUAU_AUGAUGGGU\n______________||||_____|:__||||||||:||______________|||||||_||||||:||\n______________GUCC_____AG__CCGACGCGGCA______________UUUAAUA_UACUACUCA\n3'-UUU...UUGUG____CUUU___AA________________________________A_________AUGUU...GUG-5'\n_____________|_______________________________________________________|\n_____________74______________________________________________________33\n |
206 -- 212 |
34 -- 40 |
-41.3429 kcal/mol |
18.8865 kcal/mol |
9.26614 kcal/mol |
157 213@LB@ | |@LB@5'-AUC...UGAUG UUUAC GG UGGCCCAGGGAGAA G GAAGU...AAG-3'@LB@ CAGG UU GGCUGCGCUGU AAAUUAU AUGAUGGGU@LB@ |||| |: ||||||||:|| ||||||| ||||||:||@LB@ GUCC AG CCGACGCGGCA UUUAAUA UACUACUCA@LB@3'-UUU...UUGUG CUUU AA A AUGUU...GUG-5'@LB@ | |@LB@ 74 33@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -41.3429 kcal/mol@LB@Unfolding Energy - mRNA 18.8865 kcal/mol@LB@Unfolding Energy - sRNA 9.26614 kcal/mol@LB@@LB@Position - mRNA 158 -- 212@LB@Position - sRNA 34 -- 73@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 82 |
0.004565 |
0.1855 |
b4144 |
yjeI |
-10.12 |
0.132253 |
163 -- 240 |
1 -- 93 |
DUF4156 family lipoprotein |
|
_____________162_____________________________________________________________________________________________________241\n_____________|_______________________________________________________________________________________________________|\n5'-GCA...GACGA_____________U_________UUGAUUAU_______AACA_____A_______A________________UUA____G_______________U_______UACUG...GCA-3'\n______________CGCGAGUG__GCG_CCAGC_UCA________GGGGAAU______UGC__CGUAAA______________UAC____GCA_GG_AUUG____UCGG_GCCGCGC\n______________|||||:|:__|||_|||:|_:||________|||:|||______|||__||||||______________|||____|||_:|_|:||____||:|_|||||:|\n______________GCGCUUAU__CGC_GGUUG_GGU________CCCUUUA______ACG__GCAUUU______________AUG____CGU_UC_UGAC____AGUC_CGGCGUG\n3'-UUU...CCCAC________GA_________U__________________GAACCG___CG______AAUAAUACUACUCA___UUCC___G__G____AAAA____________-5'\n_____________|______________________________________________________________________________________________________|\n_____________94_____________________________________________________________________________________________________1\n |
234 -- 240 |
1 -- 7 |
-61.0049 kcal/mol |
21.8834 kcal/mol |
29.0051 kcal/mol |
162 241@LB@ | |@LB@5'-GCA...GACGA U UUGAUUAU AACA A A UUA G U UACUG...GCA-3'@LB@ CGCGAGUG GCG CCAGC UCA GGGGAAU UGC CGUAAA UAC GCA GG AUUG UCGG GCCGCGC@LB@ |||||:|: ||| |||:| :|| |||:||| ||| |||||| ||| ||| :| |:|| ||:| |||||:|@LB@ GCGCUUAU CGC GGUUG GGU CCCUUUA ACG GCAUUU AUG CGU UC UGAC AGUC CGGCGUG@LB@3'-UUU...CCCAC GA U GAACCG CG AAUAAUACUACUCA UUCC G G AAAA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -61.0049 kcal/mol@LB@Unfolding Energy - mRNA 21.8834 kcal/mol@LB@Unfolding Energy - sRNA 29.0051 kcal/mol@LB@@LB@Position - mRNA 163 -- 240@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 136 |
0.007706 |
0.1993 |
b2188 |
yejM |
-8.60 |
0.250530 |
107 -- 119 |
70 -- 83 |
essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor |
|
_____________106____________120\n_____________|______________|\n5'-CGC...CCCCG______________CAAUU...UUG-3'\n______________GC_CCAACGCCAGG\n______________||_|||||:|||||\n______________CG_GGUUGUGGUCC\n3'-UUU...UAUGA__C___________CUUUA...GUG-5'\n_____________|______________|\n_____________84_____________69\n |
113 -- 119 |
70 -- 76 |
-22.9581 kcal/mol |
7.21499 kcal/mol |
7.14463 kcal/mol |
106 120@LB@ | |@LB@5'-CGC...CCCCG CAAUU...UUG-3'@LB@ GC CCAACGCCAGG@LB@ || |||||:|||||@LB@ CG GGUUGUGGUCC@LB@3'-UUU...UAUGA C CUUUA...GUG-5'@LB@ | |@LB@ 84 69@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -22.9581 kcal/mol@LB@Unfolding Energy - mRNA 7.21499 kcal/mol@LB@Unfolding Energy - sRNA 7.14463 kcal/mol@LB@@LB@Position - mRNA 107 -- 119@LB@Position - sRNA 70 -- 83@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 193 |
0.01192 |
0.2159 |
b2453 |
eutG |
-10.04 |
0.136932 |
27 -- 40 |
17 -- 30 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________26_____________41\n_____________|______________|\n5'-GGC...UAUUG_______G______ACUGA...GUC-3'\n______________AAGGGCA_GGCAUU\n______________|||||||_:|||:|\n______________UUCCCGU_UCGUGA\n3'-UUU...CAAUG_______G______CAAAA...GUG-5'\n_____________|______________|\n_____________31_____________16\n |
27 -- 33 |
24 -- 30 |
-21.9245 kcal/mol |
3.17394 kcal/mol |
8.71417 kcal/mol |
26 41@LB@ | |@LB@5'-GGC...UAUUG G ACUGA...GUC-3'@LB@ AAGGGCA GGCAUU@LB@ ||||||| :|||:|@LB@ UUCCCGU UCGUGA@LB@3'-UUU...CAAUG G CAAAA...GUG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -21.9245 kcal/mol@LB@Unfolding Energy - mRNA 3.17394 kcal/mol@LB@Unfolding Energy - sRNA 8.71417 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 114 |
0.006011 |
0.1855 |
b0422 |
xseB |
-10.73 |
0.101337 |
104 -- 119 |
73 -- 87 |
exonuclease VII small subunit |
|
_____________103______________120\n_____________|________________|\n5'-CAA...CGCUU________A__U____UUACC...AAG-3'\n______________UGCUGUGC_CA_CACC\n______________|:|||:||_||_||||\n______________AUGACGCG_GU_GUGG\n3'-UUU...CGCUU___________U____UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
105 -- 111 |
80 -- 86 |
-20.3088 kcal/mol |
2.628 kcal/mol |
6.95602 kcal/mol |
103 120@LB@ | |@LB@5'-CAA...CGCUU A U UUACC...AAG-3'@LB@ UGCUGUGC CA CACC@LB@ |:|||:|| || ||||@LB@ AUGACGCG GU GUGG@LB@3'-UUU...CGCUU U UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -20.3088 kcal/mol@LB@Unfolding Energy - mRNA 2.628 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 104 -- 119@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 92 |
0.004911 |
0.1855 |
b3732 |
atpD |
-9.01 |
0.211333 |
117 -- 128 |
1 -- 11 |
F1 sector of membrane-bound ATP synthase beta subunit |
|
_____________116__________129\n_____________|____________|\n5'-GGC...GCUCG_______A____UACUC...AAA-3'\n______________UCAGGCC_GCAU\n______________|||||||_|||:\n______________AGUCCGG_CGUG\n3'-UUU...CAAAA____________-5'\n_____________|___________|\n_____________12__________1\n |
117 -- 123 |
5 -- 11 |
-17.8068 kcal/mol |
3.15312 kcal/mol |
5.60325 kcal/mol |
116 129@LB@ | |@LB@5'-GGC...GCUCG A UACUC...AAA-3'@LB@ UCAGGCC GCAU@LB@ ||||||| |||:@LB@ AGUCCGG CGUG@LB@3'-UUU...CAAAA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -17.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.15312 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 117 -- 128@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 17 |
0.0008046 |
0.1666 |
b0590 |
fepD |
-14.87 |
0.015550 |
17 -- 43 |
70 -- 94 |
ferrienterobactin ABC transporter permease |
|
_____________16__________________________44\n_____________|___________________________|\n5'-AAU...AACGA___AG___________GA_________UGCGU...AAU-3'\n______________GCG__GAAUACUGCGC__AACGCCGGG\n______________|||__|||||||||||__|||:||:||\n______________CGC__CUUAUGACGCG__UUGUGGUCC\n3'-UUU...CCCCA___G____________G__________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
37 -- 43 |
70 -- 76 |
-38.1858 kcal/mol |
10.2318 kcal/mol |
13.036 kcal/mol |
16 44@LB@ | |@LB@5'-AAU...AACGA AG GA UGCGU...AAU-3'@LB@ GCG GAAUACUGCGC AACGCCGGG@LB@ ||| ||||||||||| |||:||:||@LB@ CGC CUUAUGACGCG UUGUGGUCC@LB@3'-UUU...CCCCA G G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -38.1858 kcal/mol@LB@Unfolding Energy - mRNA 10.2318 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 17 -- 43@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 25 |
0.001541 |
0.1727 |
b1948 |
fliP |
-12.25 |
0.051366 |
190 -- 216 |
44 -- 71 |
flagellar biosynthesis protein |
|
_____________189__________________________217\n_____________|____________________________|\n5'-AUU...GUAGC________C__A_________UU_____CUGUC...GCG-3'\n______________GGGAGAUC_UG__UGCGUCGU__AUUGU\n______________||||:|||_||__||||:|||__|||:|\n______________CCCUUUAG_AC__ACGCGGCA__UAAUA\n3'-UUU...GUGGU________A__CG________UU_____AUACU...GUG-5'\n_____________|____________________________|\n_____________72___________________________43\n |
203 -- 209 |
51 -- 57 |
-29.2591 kcal/mol |
10.1171 kcal/mol |
6.89657 kcal/mol |
189 217@LB@ | |@LB@5'-AUU...GUAGC C A UU CUGUC...GCG-3'@LB@ GGGAGAUC UG UGCGUCGU AUUGU@LB@ ||||:||| || ||||:||| |||:|@LB@ CCCUUUAG AC ACGCGGCA UAAUA@LB@3'-UUU...GUGGU A CG UU AUACU...GUG-5'@LB@ | |@LB@ 72 43@LB@@LB@@LB@Energy -12.25 kcal/mol@LB@Hybridization Energy -29.2591 kcal/mol@LB@Unfolding Energy - mRNA 10.1171 kcal/mol@LB@Unfolding Energy - sRNA 6.89657 kcal/mol@LB@@LB@Position - mRNA 190 -- 216@LB@Position - sRNA 44 -- 71@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 132 |
0.007501 |
0.1993 |
b1947 |
fliO |
-6.89 |
0.474041 |
212 -- 250 |
53 -- 93 |
flagellar biosynthesis protein |
|
_____________211_____________________________________________251\n_____________|_______________________________________________|\n5'-AUG...AACCA______________AAUCUUCC_______UU________________ACUGC...UCG-3'\n______________CGC___UACUGUGC________GCGCCGG_____UCU__GCUGCGCC\n______________|||___|||||:||________:|:||:|_____|||__||||||||\n______________GCG___AUGACGCG________UGUGGUC_____AGA__CGACGCGG\n3'-UUU...CCCAC___CUU________GU_____________CCUUU___AC________CAUUU...GUG-5'\n_____________|_______________________________________________|\n_____________94______________________________________________52\n |
244 -- 250 |
53 -- 59 |
-40.0502 kcal/mol |
16.0889 kcal/mol |
17.0683 kcal/mol |
211 251@LB@ | |@LB@5'-AUG...AACCA AAUCUUCC UU ACUGC...UCG-3'@LB@ CGC UACUGUGC GCGCCGG UCU GCUGCGCC@LB@ ||| |||||:|| :|:||:| ||| ||||||||@LB@ GCG AUGACGCG UGUGGUC AGA CGACGCGG@LB@3'-UUU...CCCAC CUU GU CCUUU AC CAUUU...GUG-5'@LB@ | |@LB@ 94 52@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -40.0502 kcal/mol@LB@Unfolding Energy - mRNA 16.0889 kcal/mol@LB@Unfolding Energy - sRNA 17.0683 kcal/mol@LB@@LB@Position - mRNA 212 -- 250@LB@Position - sRNA 53 -- 93@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 53 -- 59@LB@ |
