151 |
0.008943 |
0.2059 |
b1284 |
yciT |
-9.40 |
0.179701 |
94 -- 109 |
63 -- 77 |
global regulator of transcription; DeoR family |
|
_____________93_______________110\n_____________|________________|\n5'-GCA...CGAAG______U_________AACAA...CCA-3'\n______________GCACCG_GGGAGAUUU\n______________:||||:_||||:||:|\n______________UGUGGU_CCCUUUAGA\n3'-UUU...GCGGU________________ACCGA...GUG-5'\n_____________|________________|\n_____________78_______________62\n |
103 -- 109 |
63 -- 69 |
-19.5221 kcal/mol |
5.38652 kcal/mol |
4.72953 kcal/mol |
93 110@LB@ | |@LB@5'-GCA...CGAAG U AACAA...CCA-3'@LB@ GCACCG GGGAGAUUU@LB@ :||||: ||||:||:|@LB@ UGUGGU CCCUUUAGA@LB@3'-UUU...GCGGU ACCGA...GUG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -19.5221 kcal/mol@LB@Unfolding Energy - mRNA 5.38652 kcal/mol@LB@Unfolding Energy - sRNA 4.72953 kcal/mol@LB@@LB@Position - mRNA 94 -- 109@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 63 -- 69@LB@ |
94 |
0.005015 |
0.1855 |
b2703 |
srlE |
-7.35 |
0.404948 |
254 -- 271 |
70 -- 86 |
glucitol/sorbitol-specific enzyme IIB component of PTS |
|
_____________253_________________272\n_____________|___________________|\n5'-GAA...CUUGA____AAA____________AAAAA...GUA-3'\n______________GCUG___GCC_ACGCCGGG\n______________:|||___|||_||:||:||\n______________UGAC___CGG_UGUGGUCC\n3'-UUU...GCUUA____G_____U________CUUUA...GUG-5'\n_____________|___________________|\n_____________87__________________69\n |
265 -- 271 |
70 -- 76 |
-23.089 kcal/mol |
8.46506 kcal/mol |
7.27772 kcal/mol |
253 272@LB@ | |@LB@5'-GAA...CUUGA AAA AAAAA...GUA-3'@LB@ GCUG GCC ACGCCGGG@LB@ :||| ||| ||:||:||@LB@ UGAC CGG UGUGGUCC@LB@3'-UUU...GCUUA G U CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -23.089 kcal/mol@LB@Unfolding Energy - mRNA 8.46506 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 254 -- 271@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 70 -- 76@LB@ |
198 |
0.01217 |
0.2164 |
b1236 |
galU |
-11.62 |
0.068156 |
187 -- 208 |
56 -- 74 |
glucose-1-phosphate uridylyltransferase |
|
_____________186____________________209\n_____________|______________________|\n5'-CAA...ACAGU_____A______AAA_______CAUUA...UGC-3'\n______________CCAGG_GAAUUU___UGGCUGC\n______________|||||_:|||:|___|||||||\n______________GGUCC_UUUAGA___ACCGACG\n3'-UUU...GUUGU_____C________________CGGCA...GUG-5'\n_____________|______________________|\n_____________75_____________________55\n |
202 -- 208 |
56 -- 62 |
-24.2568 kcal/mol |
4.50323 kcal/mol |
8.13729 kcal/mol |
186 209@LB@ | |@LB@5'-CAA...ACAGU A AAA CAUUA...UGC-3'@LB@ CCAGG GAAUUU UGGCUGC@LB@ ||||| :|||:| |||||||@LB@ GGUCC UUUAGA ACCGACG@LB@3'-UUU...GUUGU C CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -24.2568 kcal/mol@LB@Unfolding Energy - mRNA 4.50323 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 187 -- 208@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 56 -- 62@LB@ |
73 |
0.003782 |
0.1804 |
b3560 |
glyQ |
-10.80 |
0.098141 |
7 -- 31 |
51 -- 74 |
glycine tRNA synthetase alpha subunit |
|
_____________6__________________________32\n_____________|__________________________|\n_____5'-ACAGUU____________A__AAA_____G__UAUAC...UGG-3'\n______________CCAGGGAAG_CU_UG___UGCGC_GU\n______________||||||||:_||_||___|||||_||\n______________GGUCCCUUU_GA_AC___ACGCG_CA\n3'-UUU...GUUGU_________A_____CG______G__UUUAA...GUG-5'\n_____________|__________________________|\n_____________75_________________________50\n |
9 -- 15 |
66 -- 72 |
-27.2651 kcal/mol |
7.67928 kcal/mol |
8.78847 kcal/mol |
6 32@LB@ | |@LB@ 5'-ACAGUU A AAA G UAUAC...UGG-3'@LB@ CCAGGGAAG CU UG UGCGC GU@LB@ ||||||||: || || ||||| ||@LB@ GGUCCCUUU GA AC ACGCG CA@LB@3'-UUU...GUUGU A CG G UUUAA...GUG-5'@LB@ | |@LB@ 75 50@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -27.2651 kcal/mol@LB@Unfolding Energy - mRNA 7.67928 kcal/mol@LB@Unfolding Energy - sRNA 8.78847 kcal/mol@LB@@LB@Position - mRNA 7 -- 31@LB@Position - sRNA 51 -- 74@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 66 -- 72@LB@ |
184 |
0.01102 |
0.2089 |
b1033 |
ghrA |
-10.56 |
0.108938 |
6 -- 15 |
64 -- 73 |
glyoxylate/hydroxypyruvate reductase A |
|
_____________5__________16\n_____________|__________|\n______5'-UAAUU__________AUGAC...GCG-3'\n______________UAGGGAAAUC\n______________:|||||||||\n______________GUCCCUUUAG\n3'-UUU...UUGUG__________AACCG...GUG-5'\n_____________|__________|\n_____________74_________63\n |
9 -- 15 |
64 -- 70 |
-14.6499 kcal/mol |
0.954451 kcal/mol |
3.13463 kcal/mol |
5 16@LB@ | |@LB@ 5'-UAAUU AUGAC...GCG-3'@LB@ UAGGGAAAUC@LB@ :|||||||||@LB@ GUCCCUUUAG@LB@3'-UUU...UUGUG AACCG...GUG-5'@LB@ | |@LB@ 74 63@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -14.6499 kcal/mol@LB@Unfolding Energy - mRNA 0.954451 kcal/mol@LB@Unfolding Energy - sRNA 3.13463 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 64 -- 73@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 64 -- 70@LB@ |
61 |
0.003042 |
0.1727 |
b0104 |
guaC |
-6.79 |
0.490983 |
117 -- 124 |
52 -- 59 |
GMP reductase |
|
_____________116______125\n_____________|________|\n5'-AUG...CAGUC________CAUUG...GUC-3'\n______________UUGCGCCG\n______________:|||||||\n______________GACGCGGC\n3'-UUU...GAACC________AUUUA...GUG-5'\n_____________|________|\n_____________60_______51\n |
118 -- 124 |
52 -- 58 |
-14.4979 kcal/mol |
2.89251 kcal/mol |
4.81798 kcal/mol |
116 125@LB@ | |@LB@5'-AUG...CAGUC CAUUG...GUC-3'@LB@ UUGCGCCG@LB@ :|||||||@LB@ GACGCGGC@LB@3'-UUU...GAACC AUUUA...GUG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -6.79 kcal/mol@LB@Hybridization Energy -14.4979 kcal/mol@LB@Unfolding Energy - mRNA 2.89251 kcal/mol@LB@Unfolding Energy - sRNA 4.81798 kcal/mol@LB@@LB@Position - mRNA 117 -- 124@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 52 -- 58@LB@ |
41 |
0.002142 |
0.1727 |
b2153 |
folE |
-10.82 |
0.097170 |
217 -- 276 |
53 -- 121 |
GTP cyclohydrolase I |
|
_____________216________________________________________________________________________277\n_____________|__________________________________________________________________________|\n5'-CUG...CAGUA______C__________CAU__AG__UUA_U________G____GA____________________________CGCCC...ACG-3'\n______________AAGAAG_GGCCCUGGUU___GA__CG___G_UGCGCGAG_ACUG____AACACC____________GCUGCGCC\n______________||:||:_|:|||:||:|___||__||___|_|||||||:_||||____||||||____________||||||||\n______________UUUUUU_CUGGGGCCGA___CU__GC___C_ACGCGCUU_UGAC____UUGUGG____________CGACGCGG\n___________3'-______A__________U____G___C___C________A____GCGG______UCCCUUUAGAAC________CAUUU...GUG-5'\n______________|_________________________________________________________________________|\n______________121_______________________________________________________________________52\n |
270 -- 276 |
53 -- 59 |
-62.0592 kcal/mol |
19.5041 kcal/mol |
31.7353 kcal/mol |
216 277@LB@ | |@LB@5'-CUG...CAGUA C CAU AG UUA U G GA CGCCC...ACG-3'@LB@ AAGAAG GGCCCUGGUU GA CG G UGCGCGAG ACUG AACACC GCUGCGCC@LB@ ||:||: |:|||:||:| || || | |||||||: |||| |||||| ||||||||@LB@ UUUUUU CUGGGGCCGA CU GC C ACGCGCUU UGAC UUGUGG CGACGCGG@LB@ 3'- A U G C C A GCGG UCCCUUUAGAAC CAUUU...GUG-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -62.0592 kcal/mol@LB@Unfolding Energy - mRNA 19.5041 kcal/mol@LB@Unfolding Energy - sRNA 31.7353 kcal/mol@LB@@LB@Position - mRNA 217 -- 276@LB@Position - sRNA 53 -- 121@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 53 -- 59@LB@ |
129 |
0.007194 |
0.1964 |
b3401 |
hslO |
-8.25 |
0.287762 |
98 -- 107 |
1 -- 10 |
heat shock protein Hsp33 |
|
_____________97_________108\n_____________|__________|\n5'-GCC...UUAAC__U_______CCGGA...AGA-3'\n______________CA_GCCGCAC\n______________||_|||||||\n______________GU_CGGCGUG\n3'-UUU...AAAAA__C_______-5'\n_____________|_________|\n_____________11________1\n |
101 -- 107 |
1 -- 7 |
-14.7655 kcal/mol |
1.13179 kcal/mol |
5.44172 kcal/mol |
97 108@LB@ | |@LB@5'-GCC...UUAAC U CCGGA...AGA-3'@LB@ CA GCCGCAC@LB@ || |||||||@LB@ GU CGGCGUG@LB@3'-UUU...AAAAA C -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -14.7655 kcal/mol@LB@Unfolding Energy - mRNA 1.13179 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 98 -- 107@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 1 -- 7@LB@ |
133 |
0.007533 |
0.1993 |
b2194 |
ccmH |
-11.64 |
0.067570 |
191 -- 199 |
1 -- 9 |
heme lyase CcmH subunit |
|
_____________190_______200\n_____________|_________|\n5'-CUG...UAAGG_________AAUGA...AGU-3'\n______________AGGCCGCAC\n______________|||||||||\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
193 -- 199 |
1 -- 7 |
-19.8862 kcal/mol |
2.96679 kcal/mol |
5.10726 kcal/mol |
190 200@LB@ | |@LB@5'-CUG...UAAGG AAUGA...AGU-3'@LB@ AGGCCGCAC@LB@ |||||||||@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -19.8862 kcal/mol@LB@Unfolding Energy - mRNA 2.96679 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 1 -- 7@LB@ |
131 |
0.007315 |
0.1966 |
b3824 |
rhtB |
-9.48 |
0.174149 |
77 -- 100 |
63 -- 87 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________76________________________101\n_____________|_________________________|\n5'-ACG...CUUUU______UGA_________U______GCCUC...ACC-3'\n______________UGCUGC___AACAUCGGG__AAUCU\n______________|:||||___||||:|:||__|||||\n______________AUGACG___UUGUGGUCC__UUAGA\n3'-UUU...CGCUU______CGG_________CU_____ACCGA...GUG-5'\n_____________|_________________________|\n_____________88________________________62\n |
88 -- 94 |
70 -- 76 |
-24.9255 kcal/mol |
8.06413 kcal/mol |
7.38606 kcal/mol |
76 101@LB@ | |@LB@5'-ACG...CUUUU UGA U GCCUC...ACC-3'@LB@ UGCUGC AACAUCGGG AAUCU@LB@ |:|||| ||||:|:|| |||||@LB@ AUGACG UUGUGGUCC UUAGA@LB@3'-UUU...CGCUU CGG CU ACCGA...GUG-5'@LB@ | |@LB@ 88 62@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -24.9255 kcal/mol@LB@Unfolding Energy - mRNA 8.06413 kcal/mol@LB@Unfolding Energy - sRNA 7.38606 kcal/mol@LB@@LB@Position - mRNA 77 -- 100@LB@Position - sRNA 63 -- 87@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 70 -- 76@LB@ |