158 |
0.009324 |
0.2062 |
b3574 |
yiaJ |
-10.56 |
0.109206 |
175 -- 190 |
70 -- 85 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________174______________191\n_____________|________________|\n5'-CCC...ACACU________C_______ACGCG...UUG-3'\n______________UUGCGCUA_CAUCAGG\n______________:|||||:|_||:||||\n______________GACGCGGU_GUGGUCC\n3'-UUU...CUUAU________U_______CUUUA...GUG-5'\n_____________|________________|\n_____________86_______________69\n |
184 -- 190 |
70 -- 76 |
-22.9924 kcal/mol |
5.16069 kcal/mol |
7.27689 kcal/mol |
174 191@LB@ | |@LB@5'-CCC...ACACU C ACGCG...UUG-3'@LB@ UUGCGCUA CAUCAGG@LB@ :|||||:| ||:||||@LB@ GACGCGGU GUGGUCC@LB@3'-UUU...CUUAU U CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -22.9924 kcal/mol@LB@Unfolding Energy - mRNA 5.16069 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 175 -- 190@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 70 -- 76@LB@ |
53 |
0.002649 |
0.1727 |
b2289 |
lrhA |
-9.83 |
0.149509 |
112 -- 119 |
68 -- 75 |
transcriptional repressor of flagellar motility and chemotaxis genes |
|
_____________111______120\n_____________|________|\n5'-CUG...AAACU________GGCAC...CCG-3'\n______________GCCAGGGA\n______________:|||||||\n______________UGGUCCCU\n3'-UUU...GGUUG________UUAGA...GUG-5'\n_____________|________|\n_____________76_______67\n |
113 -- 119 |
68 -- 74 |
-14.981 kcal/mol |
1.464 kcal/mol |
3.68273 kcal/mol |
111 120@LB@ | |@LB@5'-CUG...AAACU GGCAC...CCG-3'@LB@ GCCAGGGA@LB@ :|||||||@LB@ UGGUCCCU@LB@3'-UUU...GGUUG UUAGA...GUG-5'@LB@ | |@LB@ 76 67@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -14.981 kcal/mol@LB@Unfolding Energy - mRNA 1.464 kcal/mol@LB@Unfolding Energy - sRNA 3.68273 kcal/mol@LB@@LB@Position - mRNA 112 -- 119@LB@Position - sRNA 68 -- 75@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 68 -- 74@LB@ |
68 |
0.00345 |
0.1727 |
b3168 |
infB |
-10.64 |
0.105292 |
126 -- 148 |
49 -- 77 |
translation initiation factor IF-2 |
|
_____________125___________________________149\n_____________|_____________________________|\n5'-AAG...CCGGA______________A______________UAUUU...CUG-3'\n______________GCACU_____GAUU_UGGCUGC_CCGUAA\n______________:|||:_____:||:_|||||||_||||||\n______________UGUGG_____UUAG_ACCGACG_GGCAUU\n3'-UUU...GCGGU_____UCCCU____A_______C______UAAUA...GUG-5'\n_____________|_____________________________|\n_____________78____________________________48\n |
136 -- 142 |
56 -- 62 |
-27.6009 kcal/mol |
7.61735 kcal/mol |
9.34562 kcal/mol |
125 149@LB@ | |@LB@5'-AAG...CCGGA A UAUUU...CUG-3'@LB@ GCACU GAUU UGGCUGC CCGUAA@LB@ :|||: :||: ||||||| ||||||@LB@ UGUGG UUAG ACCGACG GGCAUU@LB@3'-UUU...GCGGU UCCCU A C UAAUA...GUG-5'@LB@ | |@LB@ 78 48@LB@@LB@@LB@Energy -10.64 kcal/mol@LB@Hybridization Energy -27.6009 kcal/mol@LB@Unfolding Energy - mRNA 7.61735 kcal/mol@LB@Unfolding Energy - sRNA 9.34562 kcal/mol@LB@@LB@Position - mRNA 126 -- 148@LB@Position - sRNA 49 -- 77@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 56 -- 62@LB@ |
191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
32 |
0.001707 |
0.1727 |
b3606 |
trmL |
-13.76 |
0.025837 |
263 -- 277 |
71 -- 85 |
tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent |
|
_____________262_____________278\n_____________|_______________|\n5'-UAG...CGUCU_______________CUUUC...AAC-3'\n______________UUGCGCUAAUACCGG\n______________:|||||:||:|||:|\n______________GACGCGGUUGUGGUC\n3'-UUU...CUUAU_______________CCUUU...GUG-5'\n_____________|_______________|\n_____________86______________70\n |
271 -- 277 |
71 -- 77 |
-23.7581 kcal/mol |
2.7368 kcal/mol |
7.26103 kcal/mol |
262 278@LB@ | |@LB@5'-UAG...CGUCU CUUUC...AAC-3'@LB@ UUGCGCUAAUACCGG@LB@ :|||||:||:|||:|@LB@ GACGCGGUUGUGGUC@LB@3'-UUU...CUUAU CCUUU...GUG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -13.76 kcal/mol@LB@Hybridization Energy -23.7581 kcal/mol@LB@Unfolding Energy - mRNA 2.7368 kcal/mol@LB@Unfolding Energy - sRNA 7.26103 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
116 |
0.006112 |
0.1855 |
b1260 |
trpA |
-12.39 |
0.048115 |
172 -- 199 |
63 -- 89 |
tryptophan synthase alpha subunit |
|
_____________171__________________________200\n_____________|____________________________|\n5'-GCC...UUCAC______U__AA_____GA__________GAUGG...CAU-3'\n______________GAUAUU_UG__AGCAC__GGGGAAAUCU\n______________:|||:|_:|__|:|||__:|||||||||\n______________UUAUGA_GC__UUGUG__UCCCUUUAGA\n3'-UUU...CGCGC______C__GG_____G___________ACCGA...GUG-5'\n_____________|____________________________|\n_____________90___________________________62\n |
193 -- 199 |
63 -- 69 |
-25.3377 kcal/mol |
5.06327 kcal/mol |
7.88429 kcal/mol |
171 200@LB@ | |@LB@5'-GCC...UUCAC U AA GA GAUGG...CAU-3'@LB@ GAUAUU UG AGCAC GGGGAAAUCU@LB@ :|||:| :| |:||| :|||||||||@LB@ UUAUGA GC UUGUG UCCCUUUAGA@LB@3'-UUU...CGCGC C GG G ACCGA...GUG-5'@LB@ | |@LB@ 90 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -25.3377 kcal/mol@LB@Unfolding Energy - mRNA 5.06327 kcal/mol@LB@Unfolding Energy - sRNA 7.88429 kcal/mol@LB@@LB@Position - mRNA 172 -- 199@LB@Position - sRNA 63 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 63 -- 69@LB@ |
166 |
0.009748 |
0.2068 |
b1261 |
trpB |
-12.89 |
0.038353 |
88 -- 97 |
52 -- 61 |
tryptophan synthase beta subunit |
|
_____________87_________98\n_____________|__________|\n5'-UGG...AAACC__________GACUU...UCA-3'\n______________GGCUGCGCCG\n______________||||||||||\n______________CCGACGCGGC\n3'-UUU...UAGAA__________AUUUA...GUG-5'\n_____________|__________|\n_____________62_________51\n |
91 -- 97 |
52 -- 58 |
-23.3299 kcal/mol |
5.56351 kcal/mol |
4.87533 kcal/mol |
87 98@LB@ | |@LB@5'-UGG...AAACC GACUU...UCA-3'@LB@ GGCUGCGCCG@LB@ ||||||||||@LB@ CCGACGCGGC@LB@3'-UUU...UAGAA AUUUA...GUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -23.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.56351 kcal/mol@LB@Unfolding Energy - sRNA 4.87533 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
144 |
0.008344 |
0.2033 |
b3159 |
yhbV |
-10.12 |
0.132236 |
144 -- 228 |
15 -- 82 |
U32 peptidase family protein |
|
_____________143______________________________________________________________________________________229\n_____________|________________________________________________________________________________________|\n5'-GUG...AUGUC__AA_____G__AACCAC__________AUAUCA________GGCA_______AAA___AUGAAAUAUUCCUU_______________GGUAC...AUC-3'\n______________CG__GGCAC_CA______UCUUGGC_GC______CCGUAAAU____GUGA_GA___GCA______________AGGGC_CAGUGCUGU\n______________||__::|||_||______|||||||_||______||||||||____:|||_||___:||______________|||||_|||::||||\n______________GC__UUGUG_GU______AGAACCG_CG______GGCAUUUA____UACU_CU___UGU______________UCCCG_GUCGUGACA\n3'-UUU...AUGAC__GG________CCCUUU_______A__C_____________AUAA____A__CAA______________________U_________AAAAG...GUG-5'\n_____________|________________________________________________________________________________________|\n_____________83_______________________________________________________________________________________14\n |
177 -- 183 |
48 -- 54 |
-52.1529 kcal/mol |
19.8598 kcal/mol |
22.1763 kcal/mol |
143 229@LB@ | |@LB@5'-GUG...AUGUC AA G AACCAC AUAUCA GGCA AAA AUGAAAUAUUCCUU GGUAC...AUC-3'@LB@ CG GGCAC CA UCUUGGC GC CCGUAAAU GUGA GA GCA AGGGC CAGUGCUGU@LB@ || ::||| || ||||||| || |||||||| :||| || :|| ||||| |||::||||@LB@ GC UUGUG GU AGAACCG CG GGCAUUUA UACU CU UGU UCCCG GUCGUGACA@LB@3'-UUU...AUGAC GG CCCUUU A C AUAA A CAA U AAAAG...GUG-5'@LB@ | |@LB@ 83 14@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -52.1529 kcal/mol@LB@Unfolding Energy - mRNA 19.8598 kcal/mol@LB@Unfolding Energy - sRNA 22.1763 kcal/mol@LB@@LB@Position - mRNA 144 -- 228@LB@Position - sRNA 15 -- 82@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
135 |
0.007679 |
0.1993 |
b0096 |
lpxC |
-11.14 |
0.084212 |
289 -- 298 |
76 -- 85 |
UDP-3-O-acyl N-acetylglucosamine deacetylase |
|
_____________288________299\n_____________|__________|\n5'-GAA...ACGCC__________CA-3'\n______________CUGCGCCGGC\n______________|||||||::|\n______________GACGCGGUUG\n3'-UUU...CUUAU__________UGGUC...GUG-5'\n_____________|__________|\n_____________86_________75\n |
292 -- 298 |
76 -- 82 |
-18.1767 kcal/mol |
1.93848 kcal/mol |
5.09564 kcal/mol |
288 299@LB@ | |@LB@5'-GAA...ACGCC CA-3'@LB@ CUGCGCCGGC@LB@ |||||||::|@LB@ GACGCGGUUG@LB@3'-UUU...CUUAU UGGUC...GUG-5'@LB@ | |@LB@ 86 75@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -18.1767 kcal/mol@LB@Unfolding Energy - mRNA 1.93848 kcal/mol@LB@Unfolding Energy - sRNA 5.09564 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 76 -- 85@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 76 -- 82@LB@ |
93 |
0.005014 |
0.1855 |
b0091 |
murC |
-15.25 |
0.013117 |
8 -- 30 |
73 -- 94 |
UDP-N-acetylmuramate:L-alanine ligase |
|
_____________7_______________________31\n_____________|_______________________|\n____5'-CAGCUUA____________U__________CUGGC...GCG-3'\n______________GCGUGGAUGCUG_CGCCAACACC\n______________|||:|:||:|||_||||||||||\n______________CGCGCUUAUGAC_GCGGUUGUGG\n3'-UUU...CCCCA_______________________UCCCU...GUG-5'\n_____________|_______________________|\n_____________95______________________72\n |
24 -- 30 |
73 -- 79 |
-39.1057 kcal/mol |
11.3 kcal/mol |
12.5321 kcal/mol |
7 31@LB@ | |@LB@ 5'-CAGCUUA U CUGGC...GCG-3'@LB@ GCGUGGAUGCUG CGCCAACACC@LB@ |||:|:||:||| ||||||||||@LB@ CGCGCUUAUGAC GCGGUUGUGG@LB@3'-UUU...CCCCA UCCCU...GUG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -15.25 kcal/mol@LB@Hybridization Energy -39.1057 kcal/mol@LB@Unfolding Energy - mRNA 11.3 kcal/mol@LB@Unfolding Energy - sRNA 12.5321 kcal/mol@LB@@LB@Position - mRNA 8 -- 30@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 73 -- 79@LB@ |